View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10328_high_2 (Length: 428)
Name: NF10328_high_2
Description: NF10328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10328_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 9e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 250 - 416
Target Start/End: Original strand, 13023993 - 13024159
Alignment:
| Q |
250 |
cttaaaccataagtttcttgtatttgattagagtaacaaccattgttcagcccaccagcattattgaatggaattcgtgacgtgtgaagcaatgcttaat |
349 |
Q |
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| T |
13023993 |
cttaaaccataagtttcttgtatttgattagagtaacaacctttgttcagcccaccagcattattgaatggaattcgtgacgtgtgaagcaatgcttaat |
13024092 |
T |
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| Q |
350 |
tagttgagtcgtattattcttcagatgttatctgttgaatctcttgtattatatattctccaatcca |
416 |
Q |
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| T |
13024093 |
tagttgagtcgtattattcttcacatgttatttgttgaatctcttgtattatttattctccaatcca |
13024159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 6 - 145
Target Start/End: Original strand, 13023747 - 13023887
Alignment:
| Q |
6 |
aataacaatgtttactttt-tacctttatattttactcactttagatgaacgacattcatgccttgtggtgatagatttccgtcatggcatggtgtgggg |
104 |
Q |
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| T |
13023747 |
aataacaatgtttacttttttacctttatattttactcactttagatgaacgacattcatgccttgtggtgatagatttccgtcatggcatggtgtgggg |
13023846 |
T |
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| Q |
105 |
taggagacatgaacgagggagaagcacgatttcgatataac |
145 |
Q |
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| T |
13023847 |
taggagacatgaacgagggagaagcacgatttcgatataac |
13023887 |
T |
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