View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10328_high_3 (Length: 412)

Name: NF10328_high_3
Description: NF10328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10328_high_3
NF10328_high_3
[»] chr5 (16 HSPs)
chr5 (1-396)||(8547674-8548069)
chr5 (77-396)||(1599940-1600258)
chr5 (77-396)||(8535647-8535967)
chr5 (77-396)||(8529089-8529403)
chr5 (150-260)||(8644488-8644598)
chr5 (80-396)||(9074369-9074683)
chr5 (150-260)||(8637143-8637253)
chr5 (79-184)||(2874139-2874248)
chr5 (77-285)||(8641634-8641846)
chr5 (79-184)||(2856529-2856638)
chr5 (77-135)||(2904643-2904705)
chr5 (210-260)||(2904783-2904833)
chr5 (206-260)||(8678090-8678144)
chr5 (316-352)||(2904878-2904914)
chr5 (77-134)||(8644623-8644684)
chr5 (319-355)||(9003647-9003683)
[»] chr6 (2 HSPs)
chr6 (74-259)||(16716647-16716836)
chr6 (311-396)||(16716492-16716577)
[»] scaffold0627 (2 HSPs)
scaffold0627 (74-259)||(4948-5135)
scaffold0627 (311-396)||(4793-4878)
[»] chr7 (2 HSPs)
chr7 (77-396)||(48361492-48361812)
chr7 (309-394)||(35779976-35780061)
[»] chr4 (1 HSPs)
chr4 (77-396)||(9443250-9443564)
[»] chr1 (1 HSPs)
chr1 (213-284)||(5131022-5131093)


Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 8547674 - 8548069
Alignment:
Q  1 gtgataaatatttggaagaaatatgctagacgtgcaatatgtgattatgcatgtgagattgagcgtgtggtaattgttgagatacacacactcggaacac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8547674 gtgataaatatttggaagaaatatgctagacgtgcaatatgtgattatgcatgtgagattgagcgtgtggtaattgttgagatacacacactcggaacac 8547773  T
Q  101 caacatggagaaataagtggatcctcaaatttcttcttcttatcttatgtatcccacttgtgtgaatcgtgcacttcattggatccgatttaaggaaagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8547774 caacatggagaaataagtggatcctcaaatttcttcttcttatcttatgtatcccacttgtgtgaatcgtgcacttcattggatccgatttaaggaaagg 8547873  T
Q  201 ggagggtctatattgtgtttttgttttgaaagagagaggtttcaatcatttccttctccttcatctgtgtttgaaaatcataataccgaagttcgtggtg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8547874 ggagggtctatattgtgtttttgttttgaaagagagaggtttcaatcatttccttctccttcatctgtgtttgaaaatcataataccgaagttcgtggtg 8547973  T
Q  301 cgagaagacgtattagcttgggagaattaaagggatgtctttacatttgtgactcgaactgtttctcttatgttacaatgtgggttatgaatgaat 396  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||| ||||    
T  8547974 tgagaagacgtattagcttgggagaattaaagggatgtctttacatttgtgactggaactatctctcttatgttacaatgtgggttatgaacgaat 8548069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 77 - 396
Target Start/End: Original strand, 1599940 - 1600258
Alignment:
Q  77 ttgagatacacacactcggaacaccaacatggagaaat----aagtggatcctcaaatttcttcttcttatcttatgtatcccacttgtgtgaatcgtgc 172  Q
    |||||||| ||||||| ||||||||| | |||||||||    ||||||||||||||||||||| ||     |||| | ||||||||||||||||| ||||    
T  1599940 ttgagataaacacacttggaacaccatcctggagaaatgttgaagtggatcctcaaatttctttttggatgcttaagaatcccacttgtgtgaatggtgc 1600039  T
Q  173 acttcattggatccgatttaaggaaaggggagggtctatattgtgtttttgttttgaaagagagaggtttcaatcatttccttctccttcatctgtgttt 272  Q
    ||||||||||||  ||| | |||    |  |  ||| ||||||  ||| ||||||||||| |||||||| || ||||||||||||||| ||  || ||||    
T  1600040 acttcattggataagatatgagggtgagcaaatgtcaatattggttttctgttttgaaagtgagaggttgcagtcatttccttctcctccacatgagttt 1600139  T
Q  273 gaaaatcataataccgaagttcgtggtgcgagaagacgtattagcttgggagaattaaagggatgtctttacatttgtgactcgaactgtttctcttatg 372  Q
    | |||||||||||  | |  | |||||   |  || | | ||||| |||||||||||||||||| |||||||||||||||||  | || ||| ||| |||    
T  1600140 ggaaatcataataatggaacttgtggt---aacagccatgttagcatgggagaattaaagggatttctttacatttgtgact--acctttttatctgatg 1600234  T
Q  373 ttacaatgtgggttatgaatgaat 396  Q
    || |||||||||||||||| ||||    
T  1600235 ttccaatgtgggttatgaaggaat 1600258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 77 - 396
Target Start/End: Complemental strand, 8535967 - 8535647
Alignment:
Q  77 ttgagatacacacactcggaacaccaacatggagaaat----aagtggatcctcaaatttcttcttcttatcttatgtatcccacttgtgtgaatcgtgc 172  Q
    |||||||| ||||||| ||||| ||| | |||||||||    ||||||||||||||||||||| |||   ||| | ||||||||||||||||||| ||||    
T  8535967 ttgagataaacacacttggaaccccatcctggagaaatgttgaagtggatcctcaaatttctttttcgagtctaaagtatcccacttgtgtgaatggtgc 8535868  T
Q  173 acttcattggatccgatttaaggaaaggggagggtctatattgtgtttttgttttgaaagagagaggtttcaatcatttccttctccttcatctgtgttt 272  Q
    ||| |||||| |  ||||| | |    |  | |||| ||||||  ||| || |||||||| |||| | |  | ||||||||||||||| ||    |||||    
T  8535867 actacattggctaagatttgatggtctgcaaaggtcaatattgattttctgctttgaaagtgagacgctgaagtcatttccttctcctccacagatgttt 8535768  T
Q  273 gaaaatcataataccgaagttcgtggtgcgagaagacgtattagcttgggagaattaaagggatgtctttacatttgtgactcgaactgtttctcttatg 372  Q
    | |||||||||||  | | ||| | ||   |  |||| ||||||| |||||||||||||||||| ||||||||||||||| |||| || ||| ||| |||    
T  8535767 ggaaatcataataatggatttcttagt---aatagacatattagcatgggagaattaaagggatttctttacatttgtgattcgacctttttatctgatg 8535671  T
Q  373 ttacaatgtgggttatgaatgaat 396  Q
    || |||||||||||||||||||||    
T  8535670 tttcaatgtgggttatgaatgaat 8535647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 77 - 396
Target Start/End: Complemental strand, 8529403 - 8529089
Alignment:
Q  77 ttgagatacacacactcggaacaccaacatggagaaat----aagtggatcctcaaatttcttcttcttatcttatgtatcccacttgtgtgaatcgtgc 172  Q
    |||||||| ||||||| |||||| || | |||||||||    ||||||||||||||||||||| |||   ||| | ||||||||||||||||||| ||||    
T  8529403 ttgagataaacacacttggaacaacatcctggagaaatgttgaagtggatcctcaaatttctttttcgagtctaaagtatcccacttgtgtgaatggtgc 8529304  T
Q  173 acttcattggatccgatttaaggaaaggggagggtctatattgtgtttttgttttgaaagagagaggtttcaatcatttccttctccttcatctgtgttt 272  Q
    ||||||||||||  ||||| |||    |  | |||| ||||||  ||| || |||||||  |||||||| || || |||||||||||| ||  |||||||    
T  8529303 acttcattggataagatttgagggtcagcaaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcgtttccttctcctccacatgtgttt 8529204  T
Q  273 gaaaatcataataccgaagttcgtggtgcgagaagacgtattagcttgggagaattaaagggatgtctttacatttgtgactcgaactgtttctcttatg 372  Q
    | ||||||||||      |||  | ||    | || | ||||||| |||||||||||||||||| ||| |||||||||||  ||| || | | ||| |||    
T  8529203 ggaaatcataat------gttttttgt---tgtaggcctattagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatg 8529113  T
Q  373 ttacaatgtgggttatgaatgaat 396  Q
    || |||||||||||||||||||||    
T  8529112 tttcaatgtgggttatgaatgaat 8529089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 150 - 260
Target Start/End: Complemental strand, 8644598 - 8644488
Alignment:
Q  150 tatcccacttgtgtgaatcgtgcacttcattggatccgatttaaggaaaggggagggtctatattgtgtttttgttttgaaagagagaggtttcaatcat 249  Q
    |||||||||| ||| ||| |||| |||||||||||| ||||| ||||    | | |||||||||||||||| ||||||||||| |||||||| |||||||    
T  8644598 tatcccacttatgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgttttgaaagtgagaggttgcaatcat 8644499  T
Q  250 ttccttctcct 260  Q
    |||||||||||    
T  8644498 ttccttctcct 8644488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 80 - 396
Target Start/End: Original strand, 9074369 - 9074683
Alignment:
Q  80 agatacacacactcggaacaccaacatggagaaat----aagtggatcctcaaatttcttcttcttatcttatgtatcccacttgtgtgaatcgtgcact 175  Q
    ||||| ||||||| |||||| ||| || |||||||    ||||||||||||||||||||| ||    |||   ||||||||||||||||||| |||||||    
T  9074369 agataaacacacttggaacaacaatattgagaaatgttgaagtggatcctcaaatttcttttttgagtctcgagtatcccacttgtgtgaatggtgcact 9074468  T
Q  176 tcattggatccgatttaaggaaaggggagggtctatattgtgtttttgttttgaaagagagaggtttcaatcatttccttctccttcatctgtgtttgaa 275  Q
    |||||||||  ||| | |  |   |  | |||| ||||||| ||| ||||||||||| |||||||| || ||||||||||||||| |   |||||||| |    
T  9074469 tcattggataagatatgaaaatcagcaaaggtcaatattgtttttctgttttgaaagtgagaggttgcagtcatttccttctcctccgcatgtgtttgga 9074568  T
Q  276 aatcataataccgaagttcgtggtgcgagaagacgtattagcttgggagaattaaagggatgtctttacatttgtgactcgaactgtttctcttatgtta 375  Q
    || |||||||  | | ||  || |   |  |||| ||| |   |||||||||||||||||| ||||||||||||||||| ||  | ||| ||| |||||     
T  9074569 aaccataatagtggaattgttgat---aacagacatatca---tgggagaattaaagggatttctttacatttgtgactggacatttttatctgatgttt 9074662  T
Q  376 caatgtgggttatgaatgaat 396  Q
    || ||||||||||||||||||    
T  9074663 cagtgtgggttatgaatgaat 9074683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 150 - 260
Target Start/End: Complemental strand, 8637253 - 8637143
Alignment:
Q  150 tatcccacttgtgtgaatcgtgcacttcattggatccgatttaaggaaaggggagggtctatattgtgtttttgttttgaaagagagaggtttcaatcat 249  Q
    |||||||||||||||||| || |  ||||||||||| |||||||||     | | |||||||||||||||| ||||| ||||  |||||||| |||||||    
T  8637253 tatcccacttgtgtgaatggtacgattcattggatcagatttaagggtcaagaaaggtctatattgtgtttctgtttagaaaatgagaggttgcaatcat 8637154  T
Q  250 ttccttctcct 260  Q
    |||||||||||    
T  8637153 ttccttctcct 8637143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 79 - 184
Target Start/End: Original strand, 2874139 - 2874248
Alignment:
Q  79 gagatacacacactcggaacaccaacatggagaaat----aagtggatcctcaaatttcttcttcttatcttatgtatcccacttgtgtgaatcgtgcac 174  Q
    ||||||||||| |||||||||||| |||||||||||    ||||||||||||||||||||| ||   | ||| || |||| || ||||||||| | ||||    
T  2874139 gagatacacacgctcggaacaccatcatggagaaatgttgaagtggatcctcaaatttcttttttgaagcttttgaatccaacatgtgtgaatggcgcac 2874238  T
Q  175 ttcattggat 184  Q
    ||||||||||    
T  2874239 ttcattggat 2874248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 285
Target Start/End: Complemental strand, 8641846 - 8641634
Alignment:
Q  77 ttgagatacacacactcggaacaccaacatggagaaat----aagtggatcctcaaatttcttcttcttatcttatgtatcccacttgtgtgaatcgtgc 172  Q
    |||||||| ||||||| ||| ||||| |||||||||||    ||||||||||||| ||||||  |||   ||||| ||||||||||||||||||| |||     
T  8641846 ttgagataaacacacttggagcaccatcatggagaaatgttgaagtggatcctcagatttctatttcgagtcttaagtatcccacttgtgtgaatagtgt 8641747  T
Q  173 acttcattggatccgatttaaggaaaggggagggtctatattgtgtttttgttttgaaagagagaggtttcaatcatttccttctccttcatctgtgttt 272  Q
     |||||||| |||  |||| |||    |  | |||| ||||| ||||| ||||| ||||| ||||| ||  | | ||||||||||||| ||  |||||||    
T  8641746 tcttcattgaatcaaatttgagggggagcaaaggtcaatattatgtttctgtttggaaagtgagagattgaagttatttccttctcctccacatgtgttt 8641647  T
Q  273 gaaaatcataata 285  Q
    | |||||||||||    
T  8641646 ggaaatcataata 8641634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 184
Target Start/End: Original strand, 2856529 - 2856638
Alignment:
Q  79 gagatacacacactcggaacaccaacatggagaaat----aagtggatcctcaaatttcttcttcttatcttatgtatcccacttgtgtgaatcgtgcac 174  Q
    ||||||||||| ||||||||| || |||||||||||    ||||||||||||||||||||| ||   | ||| || |||| || ||||||||| | ||||    
T  2856529 gagatacacacgctcggaacatcatcatggagaaatgttgaagtggatcctcaaatttcttttttgaagcttttgaatccaacatgtgtgaatggcgcac 2856628  T
Q  175 ttcattggat 184  Q
    ||||||||||    
T  2856629 ttcattggat 2856638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 2904643 - 2904705
Alignment:
Q  77 ttgagatacacacactcggaacaccaacatggagaaat----aagtggatcctcaaatttctt 135  Q
    ||||||||||||| ||||||||| || |||||||||||    |||||||||||||||||||||    
T  2904643 ttgagatacacacgctcggaacaacatcatggagaaatcttgaagtggatcctcaaatttctt 2904705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 2904783 - 2904833
Alignment:
Q  210 atattgtgtttttgttttgaaagagagaggtttcaatcatttccttctcct 260  Q
    |||||||||||  |||||||||| |||||| | ||||||||||||||||||    
T  2904783 atattgtgtttcagttttgaaagtgagaggatgcaatcatttccttctcct 2904833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 8678144 - 8678090
Alignment:
Q  206 gtctatattgtgtttttgttttgaaagagagaggtttcaatcatttccttctcct 260  Q
    ||||||||||||||| ||||| ||||  |||| ||| ||||||||||||||||||    
T  8678144 gtctatattgtgtttctgtttagaaactgagaagttgcaatcatttccttctcct 8678090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 2904878 - 2904914
Alignment:
Q  316 gcttgggagaattaaagggatgtctttacatttgtga 352  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  2904878 gcttgggagaattgaagggatttctttacatttgtga 2904914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 8644684 - 8644623
Alignment:
Q  77 ttgagatacacacactcggaacaccaacatggagaaat----aagtggatcctcaaatttct 134  Q
    |||||||| ||||||| ||||||||| |||||||||||    |||| |||||||||||||||    
T  8644684 ttgagataaacacacttggaacaccatcatggagaaatgctgaagtagatcctcaaatttct 8644623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 355
Target Start/End: Complemental strand, 9003683 - 9003647
Alignment:
Q  319 tgggagaattaaagggatgtctttacatttgtgactc 355  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  9003683 tgggagaattaaggggatttctttacatttgtgactc 9003647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 74 - 259
Target Start/End: Complemental strand, 16716836 - 16716647
Alignment:
Q  74 ttgttgagatacacacactcggaacaccaacatggagaaataa----gtggatcctcaaatttcttcttcttatcttatgtatcccacttgtgtgaatcg 169  Q
    ||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||| | ||| | ||||||| ||||||||||||||||| |    
T  16716836 ttgttgagatacacacactcggaacaccaacatggagaaatatcaatgtggatcctcaaatttcattttcatgtcttatgaatcccacttgtgtgaatgg 16716737  T
Q  170 tgcacttcattggatccgatttaaggaaaggggagggtctatattgtgtttttgttttgaaagagagaggtttcaatcatttccttctcc 259  Q
    ||||||||||||| ||  |||| ||| ||||| |  ||||||||||||||||||||||||||| |||| ||| || ||||||||||||||    
T  16716736 tgcacttcattggttcacatttgagggaagggaaatgtctatattgtgtttttgttttgaaagtgagaagttgcattcatttccttctcc 16716647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 311 - 396
Target Start/End: Complemental strand, 16716577 - 16716492
Alignment:
Q  311 tattagcttgggagaattaaagggatgtctttacatttgtgactcgaactgtttctcttatgttacaatgtgggttatgaatgaat 396  Q
    ||||||| |||||||||||||||||| ||| ||||||| |||||| ||||  |||   ||||||||||||||||||||||||||||    
T  16716577 tattagcatgggagaattaaagggatttctatacatttctgactcaaacttcttcgaatatgttacaatgtgggttatgaatgaat 16716492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 74 - 259
Target Start/End: Complemental strand, 5135 - 4948
Alignment:
Q  74 ttgttgagatacacacactcggaacaccaacatggagaaataa----gtggatcctcaaatttcttcttcttatcttatgtatcccacttgtgtgaatcg 169  Q
    |||| ||||||||||||||||||||| |||||||||||||||     ||||||||||||||||| | ||| | ||||||| ||||||||||||||||| |    
T  5135 ttgtcgagatacacacactcggaacatcaacatggagaaatatcaatgtggatcctcaaatttcattttcatgtcttatgaatcccacttgtgtgaatgg 5036  T
Q  170 tgcacttcattggatccgatttaaggaaaggggagggtctatattgtgtttttgttttgaaagagagaggtttcaatcatttccttctcc 259  Q
    |||||||||||||||| ||||| ||| || || |  |||  ||||||||||||||||||| || |||||||| ||||||||||| |||||    
T  5035 tgcacttcattggatcagatttgagggaaaggaaacgtc--tattgtgtttttgttttgacagtgagaggttgcaatcatttccctctcc 4948  T

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Target: scaffold0627; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 311 - 396
Target Start/End: Complemental strand, 4878 - 4793
Alignment:
Q  311 tattagcttgggagaattaaagggatgtctttacatttgtgactcgaactgtttctcttatgttacaatgtgggttatgaatgaat 396  Q
    ||||||| |||||||||||||||||| |||||||||||||||||| ||||  ||    ||||||||||||||||||||||||||||    
T  4878 tattagcatgggagaattaaagggatttctttacatttgtgactcaaactccttaaaatatgttacaatgtgggttatgaatgaat 4793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 77 - 396
Target Start/End: Original strand, 48361492 - 48361812
Alignment:
Q  77 ttgagatacacacactcggaacaccaacatggagaaat----aagtggatcctcaaatttcttcttcttatcttatgtatcccacttgtgtgaatcgtgc 172  Q
    |||||||| ||||||| ||||||||| | ||||| |||    ||||||||||||| ||||||| |||   |||   ||||||||||||||||||| ||||    
T  48361492 ttgagataaacacacttggaacaccatcctggaggaatgttgaagtggatcctcacatttctttttcgagtctcgagtatcccacttgtgtgaatggtgc 48361591  T
Q  173 acttcattggatccgatttaaggaaaggggagggtctatattgtgtttttgttttgaaagagagaggtttcaatcatttccttctccttcatctgtgttt 272  Q
    ||||||||||||  ||||| |||    |  | |||| ||||||| ||| ||||||||||| |||||| | || ||||||||||||||| ||  |||||||    
T  48361592 acttcattggataagatttgagggtcagcaaaggtcaatattgtttttctgttttgaaagtgagagggtgcagtcatttccttctcctccacatgtgttt 48361691  T
Q  273 gaaaatcataataccgaagttcgtggtgcgagaagacgtattagcttgggagaattaaagggatgtctttacatttgtgactcgaactgtttctcttatg 372  Q
    | |||||||||||  | | ||| ||||   |  || | ||||||| |||||||||||||||||| |||||||||||||||||||| || |   ||| |||    
T  48361692 ggaaatcataataatggaattcttggt---aacaggcatattagcatgggagaattaaagggatttctttacatttgtgactcgacctttgcatctgatg 48361788  T
Q  373 ttacaatgtgggttatgaatgaat 396  Q
    || |||||||||||||||||||||    
T  48361789 tttcaatgtgggttatgaatgaat 48361812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 309 - 394
Target Start/End: Complemental strand, 35780061 - 35779976
Alignment:
Q  309 cgtattagcttgggagaattaaagggatgtctttacatttgtgactcgaactgtttctcttatgttacaatgtgggttatgaatga 394  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||| ||| | |||   | |||||||||||||||||||||||||    
T  35780061 cgtattagcatgggagaattaaagggatttctttacatttgtgacttgaatttttttgttgatgttacaatgtgggttatgaatga 35779976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 77 - 396
Target Start/End: Complemental strand, 9443564 - 9443250
Alignment:
Q  77 ttgagatacacacactcggaacaccaacatggagaaat----aagtggatcctcaaatttcttcttcttatcttatgtatcccacttgtgtgaatcgtgc 172  Q
    |||||||| ||||||| |||||| || | |||||||||    ||||||||||||||||||||| |||   ||| | ||||||||||||||||||| ||||    
T  9443564 ttgagataaacacacttggaacaacatcctggagaaatgttgaagtggatcctcaaatttctttttcgagtctaaagtatcccacttgtgtgaatggtgc 9443465  T
Q  173 acttcattggatccgatttaaggaaaggggagggtctatattgtgtttttgttttgaaagagagaggtttcaatcatttccttctccttcatctgtgttt 272  Q
    ||||||||||||  ||||| ||||   |  | |||| ||||||  ||| || |||||||| |||||||| || ||||||||||||||| ||  |||||||    
T  9443464 acttcattggataagatttgaggatgagcaaaggtcaatattggttttctgctttgaaagtgagaggttgcagtcatttccttctcctccacatgtgttt 9443365  T
Q  273 gaaaatcataataccgaagttcgtggtgcgagaagacgtattagcttgggagaattaaagggatgtctttacatttgtgactcgaactgtttctcttatg 372  Q
    | ||||||||||      |||  | ||   || || | ||||||| |||||||||||||||||| ||| |||||||||||  ||| || | | ||| |||    
T  9443364 ggaaatcataat------gtttattgt---agtaggcctattagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatg 9443274  T
Q  373 ttacaatgtgggttatgaatgaat 396  Q
    || |||||||||||||||||||||    
T  9443273 tttcaatgtgggttatgaatgaat 9443250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 5131093 - 5131022
Alignment:
Q  213 ttgtgtttttgttttgaaagagagaggtttcaatcatttccttctccttcatctgtgtttgaaaatcataat 284  Q
    ||||||||  |||||||||| ||||| || |||||||| ||||||||| ||   ||||||||||||||||||    
T  5131093 ttgtgtttcagttttgaaagtgagagattgcaatcattcccttctcctccacacgtgtttgaaaatcataat 5131022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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