View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10328_high_4 (Length: 254)

Name: NF10328_high_4
Description: NF10328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10328_high_4
NF10328_high_4
[»] chr5 (12 HSPs)
chr5 (15-254)||(8547454-8547693)
chr5 (31-151)||(9074125-9074245)
chr5 (35-146)||(1599691-1599802)
chr5 (31-149)||(8529538-8529656)
chr5 (31-141)||(8536110-8536220)
chr5 (37-107)||(2844444-2844514)
chr5 (37-107)||(2856277-2856347)
chr5 (37-107)||(2873887-2873957)
chr5 (37-107)||(2904393-2904463)
chr5 (195-242)||(8536024-8536071)
chr5 (40-134)||(11353898-11353992)
chr5 (40-134)||(11373401-11373495)
[»] scaffold0627 (1 HSPs)
scaffold0627 (16-250)||(5187-5418)
[»] chr6 (1 HSPs)
chr6 (19-250)||(16716885-16717113)
[»] chr7 (4 HSPs)
chr7 (31-147)||(48361239-48361355)
chr7 (35-151)||(35780427-35780544)
chr7 (195-242)||(35780336-35780383)
chr7 (195-242)||(48361388-48361435)
[»] chr4 (1 HSPs)
chr4 (31-149)||(9443699-9443817)


Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 8547454 - 8547693
Alignment:
Q  15 cagagatcgtgatcattttgatattgtgaattcttgcagtggcttgctttgtttgtctgaaccaactaccggaaaccctttagtgatctgcaatccaatc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8547454 cagagatcgtgatcattttgatattgtgaattcttgcagtggcttgctttgtttgtctgaaccaactaccggaaaccctttagtgatctgcaatccaatc 8547553  T
Q  115 acaggggagttcataagacttcttgaagctactacgattcgtatgccaaatgacacagattatgttttaaatcaagaagcagctggttgtggtttctatc 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  8547554 acaggggagttcataagacttcttgaagctactacgattcgtatgccaaatgacacagcttatattttaaatcaagaagcagctggttgtggtttctatc 8547653  T
Q  215 ctaaaactaatgaatataaagtgataaatatttggaagaa 254  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8547654 ctaaaactaatgaatataaagtgataaatatttggaagaa 8547693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 9074125 - 9074245
Alignment:
Q  31 tttgatattgtgaattcttgcagtggcttgctttgtttgtctgaaccaactaccggaaaccctttagtgatctgcaatccaatcacaggggagttcataa 130  Q
    |||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||    
T  9074125 tttgatattgtgaattcttgcaatggtttactttgtttgtctgaaccaactaccggaaacccttcagtgatctgcaacccagtcacaggggagttcataa 9074224  T
Q  131 gacttcttgaagctactacga 151  Q
    |||||| ||||||||| ||||    
T  9074225 gacttcctgaagctaccacga 9074245  T

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Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 146
Target Start/End: Original strand, 1599691 - 1599802
Alignment:
Q  35 atattgtgaattcttgcagtggcttgctttgtttgtctgaaccaactaccggaaaccctttagtgatctgcaatccaatcacaggggagttcataagact 134  Q
    |||||||||||||||||| ||| || |||||||||||||| |||  |  ||||||||| |||||||||||||| |||||||| |||||||||||||||||    
T  1599691 atattgtgaattcttgcaatggtttactttgtttgtctgacccatatttcggaaacccattagtgatctgcaacccaatcactggggagttcataagact 1599790  T
Q  135 tcttgaagctac 146  Q
    || |||| ||||    
T  1599791 tcctgaatctac 1599802  T

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Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 31 - 149
Target Start/End: Complemental strand, 8529656 - 8529538
Alignment:
Q  31 tttgatattgtgaattcttgcagtggcttgctttgtttgtctgaaccaactaccggaaaccctttagtgatctgcaatccaatcacaggggagttcataa 130  Q
    |||||||||||||||||||||| ||| || |||||||||||||| ||| ||   ||||||||  ||||||||||||| ||| |||| |||||||||||||    
T  8529656 tttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccaatagtgatctgcaacccagtcacgggggagttcataa 8529557  T
Q  131 gacttcttgaagctactac 149  Q
    |||||| |||| |||||||    
T  8529556 gacttcctgaatctactac 8529538  T

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Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 141
Target Start/End: Complemental strand, 8536220 - 8536110
Alignment:
Q  31 tttgatattgtgaattcttgcagtggcttgctttgtttgtctgaaccaactaccggaaaccctttagtgatctgcaatccaatcacaggggagttcataa 130  Q
    |||||||||||||||||||||| ||| || |||||||||||||| ||| ||   |||||||| |||||||||||||| ||| |||| |||||||| ||||    
T  8536220 tttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcactggggagtttataa 8536121  T
Q  131 gacttcttgaa 141  Q
    |||||| ||||    
T  8536120 gacttcctgaa 8536110  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 2844444 - 2844514
Alignment:
Q  37 attgtgaattcttgcagtggcttgctttgtttgtctgaaccaactaccggaaaccctttagtgatctgcaa 107  Q
    |||||||||||||||| ||||||||||||||| |||||| || ||| ||||| |||||||||||| |||||    
T  2844444 attgtgaattcttgcaatggcttgctttgtttatctgaaacatctatcggaagccctttagtgatttgcaa 2844514  T

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Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 2856277 - 2856347
Alignment:
Q  37 attgtgaattcttgcagtggcttgctttgtttgtctgaaccaactaccggaaaccctttagtgatctgcaa 107  Q
    |||||||||||||||| ||||||||||||||| |||||| || ||| ||||| |||||||||||| |||||    
T  2856277 attgtgaattcttgcaatggcttgctttgtttatctgaaacatctatcggaagccctttagtgatttgcaa 2856347  T

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Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 2873887 - 2873957
Alignment:
Q  37 attgtgaattcttgcagtggcttgctttgtttgtctgaaccaactaccggaaaccctttagtgatctgcaa 107  Q
    |||||||||||||||| ||||||||||||||| |||||| || ||| ||||| |||||||||||| |||||    
T  2873887 attgtgaattcttgcaatggcttgctttgtttatctgaaacatctatcggaagccctttagtgatttgcaa 2873957  T

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Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 2904393 - 2904463
Alignment:
Q  37 attgtgaattcttgcagtggcttgctttgtttgtctgaaccaactaccggaaaccctttagtgatctgcaa 107  Q
    |||||||||||||||| ||||||||||||||| |||||| || ||||||||| |||||||| ||| |||||    
T  2904393 attgtgaattcttgcaatggcttgctttgtttatctgaaacatctaccggaagccctttagcgatttgcaa 2904463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 8536071 - 8536024
Alignment:
Q  195 agctggttgtggtttctatcctaaaactaatgaatataaagtgataaa 242  Q
    |||||||| ||||||| | |||||||||||||||||||| ||||||||    
T  8536071 agctggttttggtttccaacctaaaactaatgaatataaggtgataaa 8536024  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 134
Target Start/End: Original strand, 11353898 - 11353992
Alignment:
Q  40 gtgaattcttgcagtggcttgctttgtttgtctgaaccaactaccggaaaccctttagtgatctgcaatccaatcacaggggagttcataagact 134  Q
    |||||||| |||| ||||||||||||||| ||||| |||  ||| | ||||| ||||||  | ||||||||||| | ||| ||||| ||||||||    
T  11353898 gtgaattcctgcaatggcttgctttgtttatctgagccatatactgtaaaccatttagttgtttgcaatccaattataggtgagtttataagact 11353992  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 11373495 - 11373401
Alignment:
Q  40 gtgaattcttgcagtggcttgctttgtttgtctgaaccaactaccggaaaccctttagtgatctgcaatccaatcacaggggagttcataagact 134  Q
    |||||||| |||| ||||||||||||||| ||||| |||  ||| | ||||| ||||||  | ||||||||||| | ||| ||||| ||||||||    
T  11373495 gtgaattcctgcaatggcttgctttgtttatctgagccatatactgtaaaccatttagttgtttgcaatccaattataggtgagtttataagact 11373401  T

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Target: scaffold0627 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 5418 - 5187
Alignment:
Q  16 agagatcgtgatcattttgatattgtgaattcttgcagtggcttgctttgtttgtctgaaccaactaccggaaaccctttagtgatctgcaatccaatca 115  Q
    |||||||| ||| |||||  |||||||||||| || | ||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||| |||    
T  5418 agagatcgcgataattttagtattgtgaattcctgtaatggcttgctatgtttgtctcaaccaactaccggaaaccctttagtgatctgcaacccattca 5319  T
Q  116 caggggagttcataagacttcttgaagctactacgattcgtatgccaaatgacacagattatgttttaaatcaagaagcagctggttgtggtttctatcc 215  Q
      ||||||||||||||||||| |||||||| |||| ||||||||||| ||||||| | |  |||  ||   |||||   |||||||| ||||||||||||    
T  5318 tgggggagttcataagacttcctgaagctaatacggttcgtatgccacatgacacggttcgtgtaataggacaaga---agctggttttggtttctatcc 5222  T
Q  216 taaaactaatgaatataaagtgataaatatttgga 250  Q
    ||  ||||||||||||||||||||| |||||||||    
T  5221 tacgactaatgaatataaagtgatacatatttgga 5187  T

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Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 16717113 - 16716885
Alignment:
Q  19 gatcgtgatcattttgatattgtgaattcttgcagtggcttgctttgtttgtctgaaccaactaccggaaaccctttagtgatctgcaatccaatcacag 118  Q
    ||||||||| | ||| ||||||||||||| || | ||||||||| |||||||||||||||||||| ||||||||| ||||||||||||| ||| |||  |    
T  16717113 gatcgtgataagtttaatattgtgaattcatgtaatggcttgctatgtttgtctgaaccaactactggaaaccctatagtgatctgcaacccattcatgg 16717014  T
Q  119 gggagttcataagacttcttgaagctactacgattcgtatgccaaatgacacagattatgttttaaatcaagaagcagctggttgtggtttctatcctaa 218  Q
    |||| ||||||||||||| |||| |||||||  |||||||||| |||||||  | | ||||  ||   |||||   |||||||| |||||||||||||||    
T  16717013 gggaattcataagacttcctgaaactactacagttcgtatgccgaatgacagggttcatgtaataggacaaga---agctggttttggtttctatcctaa 16716917  T
Q  219 aactaatgaatataaagtgataaatatttgga 250  Q
    |||||||||||||||||||||| |||||||||    
T  16716916 aactaatgaatataaagtgatacatatttgga 16716885  T

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Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 147
Target Start/End: Original strand, 48361239 - 48361355
Alignment:
Q  31 tttgatattgtgaattcttgcagtggcttgctttgtttgtctgaaccaactaccggaaaccctttagtgatctgcaatccaatcacaggggagttcataa 130  Q
    |||||||||||||||||||||| ||| || |||||||||||||| ||| ||   |||||||| |||||||||||||| ||| ||||||||||||||||||    
T  48361239 tttgatattgtgaattcttgcaatggtttactttgtttgtctgatccatctttgggaaacccgttagtgatctgcaacccagtcacaggggagttcataa 48361338  T
Q  131 gacttcttgaagctact 147  Q
    |||||| |||| |||||    
T  48361339 gacttcctgaatctact 48361355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 35 - 151
Target Start/End: Complemental strand, 35780544 - 35780427
Alignment:
Q  35 atattgtgaattcttgcagtggcttgctttgtttgtctgaaccaactaccggaaa-ccctttagtgatctgcaatccaatcacaggggagttcataagac 133  Q
    ||||||| |||||||||| ||| ||||||||||||||| | |||  ||||| ||| |||||||||||| ||||| ||| |||| ||||||||||||||||    
T  35780544 atattgtcaattcttgcaatggtttgctttgtttgtctaatccatataccgaaaaaccctttagtgatttgcaacccagtcacgggggagttcataagac 35780445  T
Q  134 ttcttgaagctactacga 151  Q
    ||| ||||||||||||||    
T  35780444 ttcctgaagctactacga 35780427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 35780383 - 35780336
Alignment:
Q  195 agctggttgtggtttctatcctaaaactaatgaatataaagtgataaa 242  Q
    |||||||| ||||||| | |||||||||||||||||||| ||||||||    
T  35780383 agctggttttggtttccaacctaaaactaatgaatataaggtgataaa 35780336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 48361388 - 48361435
Alignment:
Q  195 agctggttgtggtttctatcctaaaactaatgaatataaagtgataaa 242  Q
    |||||||| ||||||| | |||||||||||||||||||| ||||||||    
T  48361388 agctggttttggtttccaacctaaaactaatgaatataaggtgataaa 48361435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 31 - 149
Target Start/End: Complemental strand, 9443817 - 9443699
Alignment:
Q  31 tttgatattgtgaattcttgcagtggcttgctttgtttgtctgaaccaactaccggaaaccctttagtgatctgcaatccaatcacaggggagttcataa 130  Q
    |||||||||||||||||||||| ||| || |||||||||||||| ||| ||   ||||||||  ||||||||||||| ||| |||| |||||||||||||    
T  9443817 tttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccaatagtgatctgcaacccagtcacgggggagttcataa 9443718  T
Q  131 gacttcttgaagctactac 149  Q
    |||||| |||| |||||||    
T  9443717 gacttcctgaatctactac 9443699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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