View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10328_high_6 (Length: 231)

Name: NF10328_high_6
Description: NF10328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10328_high_6
NF10328_high_6
[»] chr4 (10 HSPs)
chr4 (7-231)||(8841529-8841741)
chr4 (123-230)||(521703-521811)
chr4 (123-230)||(17420807-17420915)
chr4 (7-148)||(15622349-15622490)
chr4 (123-230)||(26458867-26458975)
chr4 (28-165)||(19918561-19918698)
chr4 (152-231)||(16058759-16058837)
chr4 (8-231)||(6405334-6405557)
chr4 (152-192)||(41526602-41526643)
chr4 (152-231)||(30652068-30652146)
[»] scaffold0059 (1 HSPs)
scaffold0059 (7-231)||(40076-40300)
[»] chr2 (8 HSPs)
chr2 (7-231)||(15474978-15475202)
chr2 (123-230)||(27159427-27159535)
chr2 (123-230)||(27169775-27169883)
chr2 (116-231)||(19342756-19342872)
chr2 (123-231)||(22908297-22908406)
chr2 (123-231)||(22902588-22902697)
chr2 (123-231)||(23730241-23730350)
chr2 (92-162)||(69671-69740)
[»] chr6 (6 HSPs)
chr6 (70-231)||(19361294-19361455)
chr6 (123-230)||(34765804-34765912)
chr6 (123-227)||(8562771-8562877)
chr6 (165-231)||(18333206-18333273)
chr6 (156-231)||(22223074-22223148)
chr6 (156-231)||(22248909-22248983)
[»] chr5 (5 HSPs)
chr5 (123-231)||(19547947-19548056)
chr5 (123-231)||(36316807-36316916)
chr5 (123-230)||(20948300-20948408)
chr5 (123-230)||(20958669-20958777)
chr5 (163-229)||(20904220-20904285)
[»] chr3 (7 HSPs)
chr3 (123-231)||(24793886-24793995)
chr3 (123-230)||(49386889-49386997)
chr3 (123-230)||(24872730-24872838)
chr3 (123-231)||(17734586-17734695)
chr3 (123-231)||(19035855-19035964)
chr3 (71-231)||(11459534-11459694)
chr3 (12-82)||(13431125-13431195)
[»] chr1 (4 HSPs)
chr1 (123-231)||(52949202-52949311)
chr1 (123-230)||(1974190-1974298)
chr1 (123-230)||(1988977-1989085)
chr1 (152-229)||(21820965-21821039)
[»] scaffold0764 (1 HSPs)
scaffold0764 (123-230)||(285-393)
[»] scaffold0313 (2 HSPs)
scaffold0313 (123-230)||(6216-6324)
scaffold0313 (123-230)||(20373-20481)
[»] chr8 (5 HSPs)
chr8 (123-230)||(14437870-14437978)
chr8 (123-230)||(26361845-26361953)
chr8 (97-225)||(20851910-20852038)
chr8 (8-162)||(2689853-2690006)
chr8 (92-165)||(14893597-14893669)
[»] chr7 (10 HSPs)
chr7 (123-230)||(5614961-5615069)
chr7 (123-230)||(13285211-13285319)
chr7 (123-229)||(41028047-41028154)
chr7 (123-230)||(31825167-31825275)
chr7 (123-230)||(12826845-12826953)
chr7 (123-231)||(42595831-42595940)
chr7 (8-229)||(12770422-12770642)
chr7 (9-134)||(2991487-2991611)
chr7 (163-228)||(9007437-9007502)
chr7 (178-231)||(15988172-15988224)
[»] scaffold0434 (2 HSPs)
scaffold0434 (131-231)||(14475-14576)
scaffold0434 (9-61)||(14354-14406)
[»] scaffold0121 (1 HSPs)
scaffold0121 (97-229)||(6520-6651)
[»] scaffold0811 (1 HSPs)
scaffold0811 (153-225)||(2995-3065)
[»] scaffold0360 (1 HSPs)
scaffold0360 (22-77)||(597-652)
[»] scaffold0265 (1 HSPs)
scaffold0265 (152-229)||(11770-11844)


Alignment Details
Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 8841529 - 8841741
Alignment:
Q  7 ggtgggtcccaagacacgtgacacaagactattggtcacacttcaatggctacaagaggtcaagacactctgtaaatagaagcggaaggttcaacattac 106  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||    
T  8841529 ggtgggtcccaggacacgtggcacaagactattggtcacacttcaatggctacaagagttcaagacactctataaatagaagaggaaggttcaacattac 8841628  T
Q  107 ttgcaacagtgcagaacatacaagaaaacaacacaaaagtgtttaaagctttagcaaaaacattgatctcacaaagattccaagaaatctttaaaagtgt 206  Q
    |||||  |||||| |||||||||||||||| |||||||||||||             |||||||||||||||||||||||||||||||||||||||||||    
T  8841629 ttgcactagtgcaaaacatacaagaaaacaccacaaaagtgttt------------gaaacattgatctcacaaagattccaagaaatctttaaaagtgt 8841716  T
Q  207 gaatcaatatctctcttatcttttt 231  Q
    |||||||||||||||||||||||||    
T  8841717 gaatcaatatctctcttatcttttt 8841741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 123 - 230
Target Start/End: Complemental strand, 521811 - 521703
Alignment:
Q  123 catacaagaaaacaacacaaaagtgtttaaagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctc 221  Q
    ||||||||||||||||| || ||||||| ||||||||||||||| ||||||| |||||||||||||||||| |||| |||||||| ||||||||||||||    
T  521811 catacaagaaaacaacataagagtgtttgaagctttagcaaaaatattgatcatcacaaagattccaagaagtcttcaaaagtgtaaatcaatatctctc 521712  T
Q  222 ttatctttt 230  Q
    |||||||||    
T  521711 ttatctttt 521703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 123 - 230
Target Start/End: Complemental strand, 17420915 - 17420807
Alignment:
Q  123 catacaagaaaacaacacaaaagtgtttaaagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctc 221  Q
    ||||||||||||||||| || ||||||| ||||||||||||||| ||||||| |||||||||||||||||| |||| |||||| | ||||||||||||||    
T  17420915 catacaagaaaacaacataagagtgtttgaagctttagcaaaaatattgatcatcacaaagattccaagaagtcttcaaaagtataaatcaatatctctc 17420816  T
Q  222 ttatctttt 230  Q
    |||||||||    
T  17420815 ttatctttt 17420807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 7 - 148
Target Start/End: Complemental strand, 15622490 - 15622349
Alignment:
Q  7 ggtgggtcccaagacacgtgacacaagactattggtcacacttcaatggctacaagaggtcaagacactctgtaaatagaagcggaaggttcaacattac 106  Q
    ||||||||||| ||||| || |||||||| ||||||||| || ||||| ||| ||||| |||||| ||||| | |||||||| |||||| ||||||||||    
T  15622490 ggtgggtcccaggacacatggcacaagaccattggtcactctccaatgactaaaagagctcaagaaactctattaatagaagtggaaggctcaacattac 15622391  T
Q  107 ttgcaacagtgcagaacatacaagaaaacaacacaaaagtgt 148  Q
    ||||| || |||| |||||||||| |||||||| ||||||||    
T  15622390 ttgcaccattgcaaaacatacaagtaaacaacataaaagtgt 15622349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 123 - 230
Target Start/End: Original strand, 26458867 - 26458975
Alignment:
Q  123 catacaagaaaacaacacaaaagtgtttaaagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctc 221  Q
    ||||||||||||||| | || ||||||| ||||||||| ||||| ||||||| |||||||||||||||||| |||| |||||||| ||||||||||||||    
T  26458867 catacaagaaaacaatataagagtgtttgaagctttagaaaaaatattgatcatcacaaagattccaagaagtcttcaaaagtgtaaatcaatatctctc 26458966  T
Q  222 ttatctttt 230  Q
    |||||||||    
T  26458967 ttatctttt 26458975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 165
Target Start/End: Original strand, 19918561 - 19918698
Alignment:
Q  28 cacaagactattggtcacacttcaatggctacaagaggtcaagacactctgtaaatagaagcggaaggttcaacattacttgcaacagtgcagaacatac 127  Q
    |||||||| |||| |||| || |||  |||||||||||||||||||| || |||||||||| |||||| ||| ||||||||||| |  | || | |||||    
T  19918561 cacaagaccattgctcactctccaacagctacaagaggtcaagacaccctataaatagaagtggaaggctcagcattacttgcacctttacaaagcatac 19918660  T
Q  128 aagaaaacaacacaaaagtgtttaaagctttagcaaaa 165  Q
    |||||||||||  || ||||||| ||||||||||||||    
T  19918661 aagaaaacaacttaagagtgtttgaagctttagcaaaa 19918698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 231
Target Start/End: Original strand, 16058759 - 16058837
Alignment:
Q  152 aagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctcttatcttttt 231  Q
    ||||||||||||||| ||||||| |||||||||||||||||| |||||  |||||| ||||||| | ||||||||||||||    
T  16058759 aagctttagcaaaaa-attgatcatcacaaagattccaagaagtctttttaagtgtaaatcaat-tatctcttatcttttt 16058837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 231
Target Start/End: Complemental strand, 6405557 - 6405334
Alignment:
Q  8 gtgggtcccaagacacgtgacacaagactattggtcacacttcaatggctacaagaggtcaagacactctgtaaatagaagcggaaggttcaacattact 107  Q
    ||||| |||| ||||| ||  ||||||| |||||||||  | ||| |||||||||||  ||||| ||||| ||| || ||| | ||||  || |||||||    
T  6405557 gtggggcccaggacacatggaacaagaccattggtcaccttccaacggctacaagagcccaaga-actctataagtataagtgaaaggcacatcattact 6405459  T
Q  108 tgcaacagtgcagaacatacaag-aaaacaacacaaaagtgtt-taaagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagt 204  Q
    |||| || || | | || ||||| ||||||||| ||||||||| | || |||||||||||| ||||||| | || |||||| |||||| ||||| |||||    
T  6405458 tgcaccattgtaaagca-acaagaaaaacaacagaaaagtgttgtgaaactttagcaaaaaaattgatcataactaagatttcaagaagtcttttaaagt 6405360  T
Q  205 gtgaatcaatatctctcttatcttttt 231  Q
    || ||||||| | ||||||||||||||    
T  6405359 gtaaatcaat-tatctcttatcttttt 6405334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 41526602 - 41526643
Alignment:
Q  152 aagctttagcaaaaacattgatc-tcacaaagattccaagaa 192  Q
    ||||||||||||||| ||||||| ||||||||||||||||||    
T  41526602 aagctttagcaaaaaaattgatcatcacaaagattccaagaa 41526643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 231
Target Start/End: Original strand, 30652068 - 30652146
Alignment:
Q  152 aagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctcttatcttttt 231  Q
    ||||||||||||||| ||||||| ||||||||||| ||| || |||||  |||||| ||||||| ||||| ||||||||||    
T  30652068 aagctttagcaaaaa-attgatcatcacaaagatttcaataagtctttttaagtgtaaatcaat-tctcttttatcttttt 30652146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 40300 - 40076
Alignment:
Q  7 ggtgggtcccaagacacgtgacacaagactattggtcacacttcaatggctacaagaggtcaagacactctgtaaatagaagcggaaggttcaacattac 106  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||| |||||| ||||||||||||||| ||||||||||  ||||| || |||||||    
T  40300 ggtgggtcccaagacacgtggcacaagactattggtcacactccaatgactacaaaaggtcaagacactctataaatagaagtagaaggctcgacattac 40201  T
Q  107 ttgcaacagtgcagaacatacaagaaaacaacacaaaagtgtttaaagctttagcaaaaacattgatctcacaaagattccaagaaatctttaaaagtgt 206  Q
       || |  |||| | ||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||| ||||    
T  40200 acacacctttgcaaagcatacaagaaaacaacataagagtgtttgaagctttagcaaaaacattgatctcacaaagattccaagaagtatttaaacgtgt 40101  T
Q  207 gaatcaatatctctcttatcttttt 231  Q
    | |||||||| ||||||||||||||    
T  40100 gtatcaatatttctcttatcttttt 40076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 15475202 - 15474978
Alignment:
Q  7 ggtgggtcccaagacacgtgacacaagactattggtcacacttcaatggctacaagaggtcaagacactctgtaaatagaagcggaaggttcaacattac 106  Q
    ||||||||| | |||||||| |||||||||||| |||||||| ||   ||||||||||||||||||||||| |||||||||| |||||| ||||||||||    
T  15475202 ggtgggtcctaggacacgtggcacaagactattagtcacactccagctgctacaagaggtcaagacactctataaatagaagtggaaggctcaacattac 15475103  T
Q  107 ttgcaacagtgcagaacatacaagaaaacaacacaaaagtgtttaaagctttagcaaaaacattgatctcacaaagattccaagaaatctttaaaagtgt 206  Q
       || |  |||| | ||||||||||||||||| || ||||||| |||||||||||||||||||||| |||||||||||||||||| | |||||| ||||    
T  15475102 acacacctttgcaaagcatacaagaaaacaacataagagtgtttgaagctttagcaaaaacattgatgtcacaaagattccaagaagtatttaaacgtgt 15475003  T
Q  207 gaatcaatatctctcttatcttttt 231  Q
    | |||||||| ||||||||||||||    
T  15475002 gtatcaatatttctcttatcttttt 15474978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 123 - 230
Target Start/End: Complemental strand, 27159535 - 27159427
Alignment:
Q  123 catacaagaaaacaacacaaaagtgtttaaagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctc 221  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||| |||| |||||||| ||||||||||||||    
T  27159535 catacaagaaaacaacacaagagtgtttaaagctttagcaaaaatattgatcatcacaaagattccaagaagtcttcaaaagtgtaaatcaatatctctc 27159436  T
Q  222 ttatctttt 230  Q
    |||||||||    
T  27159435 ttatctttt 27159427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 123 - 230
Target Start/End: Complemental strand, 27169883 - 27169775
Alignment:
Q  123 catacaagaaaacaacacaaaagtgtttaaagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctc 221  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||| |||| |||||||| ||||||||||||||    
T  27169883 catacaagaaaacaacacaagagtgtttaaagctttagcaaaaatattgatcatcacaaagattccaagaagtcttcaaaagtgtaaatcaatatctctc 27169784  T
Q  222 ttatctttt 230  Q
    |||||||||    
T  27169783 ttatctttt 27169775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 116 - 231
Target Start/End: Original strand, 19342756 - 19342872
Alignment:
Q  116 tgcagaacatacaagaaaacaacacaaaagtgtttaaagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaat 214  Q
    |||| ||||||||||||||||||| || ||||||| ||||||||||||||||||||||| |||||||||||||||||| |||| |||||||| |||||||    
T  19342756 tgcaaaacatacaagaaaacaacataagagtgtttgaagctttagcaaaaacattgatcatcacaaagattccaagaagtcttcaaaagtgtaaatcaat 19342855  T
Q  215 atctctcttatcttttt 231  Q
    || ||||||||||||||    
T  19342856 atttctcttatcttttt 19342872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 123 - 231
Target Start/End: Complemental strand, 22908406 - 22908297
Alignment:
Q  123 catacaagaaaacaacacaaaagtgtttaaagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctc 221  Q
    ||||||||||||||||| || ||||||| ||||||||||||||| ||||||| |||||||||||||||||| |||| |||||||| ||||||||| ||||    
T  22908406 catacaagaaaacaacataagagtgtttgaagctttagcaaaaatattgatcatcacaaagattccaagaagtcttcaaaagtgtaaatcaatatttctc 22908307  T
Q  222 ttatcttttt 231  Q
    ||||||||||    
T  22908306 ttatcttttt 22908297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 123 - 231
Target Start/End: Original strand, 22902588 - 22902697
Alignment:
Q  123 catacaagaaaacaacacaaaagtgtttaaagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctc 221  Q
    ||||||||||||||||| || ||||||| |||||||| |||||||||||||| | |||||||||||||||| |||| |||||||| ||||||||| ||||    
T  22902588 catacaagaaaacaacataagagtgtttgaagctttaacaaaaacattgatcataacaaagattccaagaagtcttcaaaagtgtaaatcaatatttctc 22902687  T
Q  222 ttatcttttt 231  Q
    ||||||||||    
T  22902688 ttatcttttt 22902697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 123 - 231
Target Start/End: Original strand, 23730241 - 23730350
Alignment:
Q  123 catacaagaaaacaacacaaaagtgtttaaagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctc 221  Q
    ||||||||||||||||| || ||||||| || |||||||||||||||||||| |||||||||||||||||| |||| |||||||| ||| ||||| ||||    
T  23730241 catacaagaaaacaacataagagtgtttgaatctttagcaaaaacattgatcatcacaaagattccaagaagtcttcaaaagtgtaaattaatatttctc 23730340  T
Q  222 ttatcttttt 231  Q
    ||||||||||    
T  23730341 ttatcttttt 23730350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 162
Target Start/End: Complemental strand, 69740 - 69671
Alignment:
Q  92 aaggttcaacattacttgcaacagtgcagaacatacaagaaaacaacacaaaagtgtttaaagctttagca 162  Q
    |||| ||||||||||||||| || |||| | ||||||||||||||||| | || ||||| |||||||||||    
T  69740 aaggatcaacattacttgcaccattgcaaatcatacaagaaaacaacagagaa-tgtttgaagctttagca 69671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 70 - 231
Target Start/End: Original strand, 19361294 - 19361455
Alignment:
Q  70 gacactctgtaaatagaagcggaaggttcaacattacttgcaacagtgcagaacatacaagaaaacaacacaaaagtgtttaaagctttagcaaaaacat 169  Q
    |||||||| |||||| ||| | |||| |||||||||||||||    |||| | ||||||||||||||||| || ||||||| ||||||||||||||||||    
T  19361294 gacactctataaataaaagtgaaaggctcaacattacttgcacttttgcaaagcatacaagaaaacaacataatagtgtttgaagctttagcaaaaacat 19361393  T
Q  170 tgatctcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctcttatcttttt 231  Q
    ||||||||||||||||||||||| ||| |||||||||| |||||||| ||||||||||||||    
T  19361394 tgatctcacaaagattccaagaagtctataaaagtgtgtatcaatatttctcttatcttttt 19361455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 123 - 230
Target Start/End: Original strand, 34765804 - 34765912
Alignment:
Q  123 catacaagaaaacaacacaaaagtgtttaaagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctc 221  Q
    ||||||||||||||||| || ||||||| ||||||||||||||| ||||||| |||||||||||||||||| |||| |||||||| ||||||||||||||    
T  34765804 catacaagaaaacaacataagagtgtttgaagctttagcaaaaatattgatcatcacaaagattccaagaagtcttcaaaagtgtaaatcaatatctctc 34765903  T
Q  222 ttatctttt 230  Q
    |||||||||    
T  34765904 ttatctttt 34765912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 123 - 227
Target Start/End: Complemental strand, 8562877 - 8562771
Alignment:
Q  123 catacaagaaaacaacacaaaagtgtttaaagctttagcaaaaac-attgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctct 220  Q
    ||||||||||||||||| || ||||||| |||||||||||||||  ||||||| |||||||||||||||||| |||| |||||||| ||||||||| |||    
T  8562877 catacaagaaaacaacataagagtgtttgaagctttagcaaaaaatattgatcatcacaaagattccaagaagtcttcaaaagtgtaaatcaatatttct 8562778  T
Q  221 cttatct 227  Q
    |||||||    
T  8562777 cttatct 8562771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 231
Target Start/End: Original strand, 18333206 - 18333273
Alignment:
Q  165 aacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctcttatcttttt 231  Q
    |||||||||| ||||||||||||||| || |||| |||||| | ||||||||| ||||||||||||||    
T  18333206 aacattgatcatcacaaagattccaaaaagtcttcaaaagtataaatcaatatttctcttatcttttt 18333273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 22223148 - 22223074
Alignment:
Q  156 tttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctcttatcttttt 231  Q
    ||||||||||| ||||||| |||||||| ||||||||| |||||  |||||| ||||||| ||||||||||||||||    
T  22223148 tttagcaaaaa-attgatcatcacaaaggttccaagaagtctttttaagtgtaaatcaat-tctctcttatcttttt 22223074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 22248983 - 22248909
Alignment:
Q  156 tttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctcttatcttttt 231  Q
    ||||||||||| ||||||| |||||||| ||||||||| |||||  |||||| ||||||| ||||||||||||||||    
T  22248983 tttagcaaaaa-attgatcatcacaaaggttccaagaagtctttttaagtgtaaatcaat-tctctcttatcttttt 22248909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 123 - 231
Target Start/End: Complemental strand, 19548056 - 19547947
Alignment:
Q  123 catacaagaaaacaacacaaaagtgtttaaagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctc 221  Q
    ||||||| ||||||||| || ||||||| ||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||| ||||    
T  19548056 catacaaaaaaacaacataagagtgtttgaagctttagcaaaaacattgatcatcacaaagattccaagaagtcttcaaaagtgtgaatcaatatttctc 19547957  T
Q  222 ttatcttttt 231  Q
    ||||||||||    
T  19547956 ttatcttttt 19547947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 123 - 231
Target Start/End: Original strand, 36316807 - 36316916
Alignment:
Q  123 catacaagaaaacaacacaaaagtgtttaaagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctc 221  Q
    ||||||||||||||||| || ||||||| ||||||||||||||| ||||||| |||||||||||||||||| |||| |||||||| ||||||||||||||    
T  36316807 catacaagaaaacaacataagagtgtttgaagctttagcaaaaatattgatcatcacaaagattccaagaagtcttcaaaagtgtaaatcaatatctctc 36316906  T
Q  222 ttatcttttt 231  Q
    ||||||||||    
T  36316907 ttatcttttt 36316916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 123 - 230
Target Start/End: Original strand, 20948300 - 20948408
Alignment:
Q  123 catacaagaaaacaacacaaaagtgtttaaagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctc 221  Q
    ||||||||||||||||| || ||||||| ||||||||||||||| ||||||| |||||||||||||||||| |||| |||||||| ||||||||||||||    
T  20948300 catacaagaaaacaacataagagtgtttgaagctttagcaaaaatattgatcatcacaaagattccaagaagtcttcaaaagtgtaaatcaatatctctc 20948399  T
Q  222 ttatctttt 230  Q
    |||||||||    
T  20948400 ttatctttt 20948408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 123 - 230
Target Start/End: Original strand, 20958669 - 20958777
Alignment:
Q  123 catacaagaaaacaacacaaaagtgtttaaagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctc 221  Q
    ||||||||||||||||| || ||||||| ||||||||||||||| ||||||| |||||||||||||||||| |||| |||||||| ||||||||||||||    
T  20958669 catacaagaaaacaacataagagtgtttgaagctttagcaaaaatattgatcatcacaaagattccaagaagtcttcaaaagtgtaaatcaatatctctc 20958768  T
Q  222 ttatctttt 230  Q
    |||||||||    
T  20958769 ttatctttt 20958777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 20904285 - 20904220
Alignment:
Q  163 aaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctcttatcttt 229  Q
    |||| ||||||| |||||||||||||||||| || |||||||||| ||||||| ||||||||||||||    
T  20904285 aaaaaattgatcatcacaaagattccaagaagtc-ttaaaagtgtaaatcaat-tctctcttatcttt 20904220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 123 - 231
Target Start/End: Original strand, 24793886 - 24793995
Alignment:
Q  123 catacaagaaaacaacacaaaagtgtttaaagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctc 221  Q
    ||||||||||||||||| || ||||||| ||||||||||||||||||||||| |||||||||||||||||| |||| |||||||| ||||||||| ||||    
T  24793886 catacaagaaaacaacataagagtgtttgaagctttagcaaaaacattgatcatcacaaagattccaagaagtcttcaaaagtgtaaatcaatatttctc 24793985  T
Q  222 ttatcttttt 231  Q
    ||||||||||    
T  24793986 ttatcttttt 24793995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 123 - 230
Target Start/End: Complemental strand, 49386997 - 49386889
Alignment:
Q  123 catacaagaaaacaacacaaaagtgtttaaagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctc 221  Q
    ||||||||||||||||| || ||||||| ||||||||||||||| ||||||| |||||||||||||||||| |||| |||||||| ||||||||||||||    
T  49386997 catacaagaaaacaacataagagtgtttgaagctttagcaaaaatattgatcatcacaaagattccaagaagtcttcaaaagtgtaaatcaatatctctc 49386898  T
Q  222 ttatctttt 230  Q
    |||||||||    
T  49386897 ttatctttt 49386889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 123 - 230
Target Start/End: Complemental strand, 24872838 - 24872730
Alignment:
Q  123 catacaagaaaacaacacaaaagtgtttaaagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctc 221  Q
    ||||||||||||||||| || ||||||| ||||||||||||||| ||||||| |||||||||||||||||| |||| |||||||| ||||||||||||||    
T  24872838 catacaagaaaacaacataagagtgtttgaagctttagcaaaaatattgatcatcacaaagattccaagaagtcttcaaaagtgtaaatcaatatctctc 24872739  T
Q  222 ttatctttt 230  Q
     ||||||||    
T  24872738 atatctttt 24872730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 123 - 231
Target Start/End: Original strand, 17734586 - 17734695
Alignment:
Q  123 catacaagaaaac-aacacaaaagtgtttaaagctttagcaaaaa-cattgatctcacaaagattccaagaaatctttaaaagtgtgaatcaatatctct 220  Q
    ||||||||||||  |||| |||||||||| ||||||||||||||| | |||||||||||||||||||||||| ||  |||| ||||| |||||||| |||    
T  17734586 catacaagaaaaataacataaaagtgtttgaagctttagcaaaaaactttgatctcacaaagattccaagaagtc-ataaacgtgtgcatcaatatttct 17734684  T
Q  221 cttatcttttt 231  Q
    |||||||||||    
T  17734685 cttatcttttt 17734695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 123 - 231
Target Start/End: Original strand, 19035855 - 19035964
Alignment:
Q  123 catacaagaaaac-aacacaaaagtgtttaaagctttagcaaaaa-cattgatctcacaaagattccaagaaatctttaaaagtgtgaatcaatatctct 220  Q
    ||||||||||||  |||| |||||||||| ||||||||||||||| | |||||||||||||||||||||||| ||  |||| ||||| |||||||| |||    
T  19035855 catacaagaaaaataacataaaagtgtttgaagctttagcaaaaaactttgatctcacaaagattccaagaagtc-ataaacgtgtgcatcaatatttct 19035953  T
Q  221 cttatcttttt 231  Q
    |||||||||||    
T  19035954 cttatcttttt 19035964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 231
Target Start/End: Original strand, 11459534 - 11459694
Alignment:
Q  71 acactctgtaaatagaagcggaaggttcaacattacttgcaacagtgcagaacatacaagaaaa-caacacaaaagtgtt-taaagctttagcaaaaaca 168  Q
    ||||||| |||||||||| |||||  | ||||||||||||| || || | | || ||||||||| ||||| || | |||| | ||| ||||||||||| |    
T  11459534 acactctataaatagaagtggaagacttaacattacttgcaccattgaaaagca-acaagaaaaacaacataataatgttgtgaagatttagcaaaaa-a 11459631  T
Q  169 ttgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctcttatcttttt 231  Q
    |||||| ||||||||||| | |||| ||||||||||||| ||||||| ||||||||||| ||||    
T  11459632 ttgatcatcacaaagatttctagaagtctttaaaagtgtaaatcaat-tctctcttatcatttt 11459694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 13431195 - 13431125
Alignment:
Q  12 gtcccaagacacgtgacacaagactattggtcacacttcaatggctacaagaggtcaagacactctgtaaa 82  Q
    |||||| ||||| || ||||| ||||||||||| ||| ||| |||||||||||||||||| ||||| ||||    
T  13431195 gtcccaggacacatggcacaaaactattggtcatactccaacggctacaagaggtcaagaaactctataaa 13431125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 123 - 231
Target Start/End: Complemental strand, 52949311 - 52949202
Alignment:
Q  123 catacaagaaaacaacacaaaagtgtttaaagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctc 221  Q
    ||||||||||||||||| || ||||||| ||||||||||||||||||||||| |||||||||||||||||| |||| |||||||| ||||||||| ||||    
T  52949311 catacaagaaaacaacataagagtgtttgaagctttagcaaaaacattgatcatcacaaagattccaagaagtcttcaaaagtgtaaatcaatatttctc 52949212  T
Q  222 ttatcttttt 231  Q
    ||||||||||    
T  52949211 ttatcttttt 52949202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 123 - 230
Target Start/End: Complemental strand, 1974298 - 1974190
Alignment:
Q  123 catacaagaaaacaacacaaaagtgtttaaagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctc 221  Q
    ||||||||||||||||| || ||||||| ||||||||||||||| ||||||| |||||||||||||||||| |||| |||||||| ||||||||||||||    
T  1974298 catacaagaaaacaacataagagtgtttgaagctttagcaaaaatattgatcatcacaaagattccaagaagtcttcaaaagtgtaaatcaatatctctc 1974199  T
Q  222 ttatctttt 230  Q
    |||||||||    
T  1974198 ttatctttt 1974190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 123 - 230
Target Start/End: Complemental strand, 1989085 - 1988977
Alignment:
Q  123 catacaagaaaacaacacaaaagtgtttaaagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctc 221  Q
    ||||||||||||||||| || ||||||| ||||||||||||||| ||||||| |||||||||||||||||| |||| |||||||| ||||||||||||||    
T  1989085 catacaagaaaacaacataagagtgtttgaagctttagcaaaaatattgatcatcacaaagattccaagaagtcttcaaaagtgtaaatcaatatctctc 1988986  T
Q  222 ttatctttt 230  Q
    |||||||||    
T  1988985 ttatctttt 1988977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 21821039 - 21820965
Alignment:
Q  152 aagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctcttatcttt 229  Q
    |||||||||||||||  |||||| |||||||||||||||||| || |||||||||| ||||||| ||||||||||||||    
T  21821039 aagctttagcaaaaa--ttgatcatcacaaagattccaagaagtc-ttaaaagtgtaaatcaat-tctctcttatcttt 21820965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0764 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0764
Description:

Target: scaffold0764; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 123 - 230
Target Start/End: Complemental strand, 393 - 285
Alignment:
Q  123 catacaagaaaacaacacaaaagtgtttaaagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctc 221  Q
    ||||||||||||||||| || ||||||| ||||||||||||||| ||||||| |||||||||||||||||| |||| |||||||| ||||||||||||||    
T  393 catacaagaaaacaacataagagtgtttgaagctttagcaaaaatattgatcatcacaaagattccaagaagtcttcaaaagtgtaaatcaatatctctc 294  T
Q  222 ttatctttt 230  Q
    |||||||||    
T  293 ttatctttt 285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0313
Description:

Target: scaffold0313; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 123 - 230
Target Start/End: Original strand, 6216 - 6324
Alignment:
Q  123 catacaagaaaacaacacaaaagtgtttaaagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctc 221  Q
    ||||||||||||||||| || ||||||| ||||||||||||||| ||||||| |||||||||||||||||| |||| |||||||| ||||||||||||||    
T  6216 catacaagaaaacaacataagagtgtttgaagctttagcaaaaatattgatcatcacaaagattccaagaagtcttcaaaagtgtaaatcaatatctctc 6315  T
Q  222 ttatctttt 230  Q
    |||||||||    
T  6316 ttatctttt 6324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 123 - 230
Target Start/End: Original strand, 20373 - 20481
Alignment:
Q  123 catacaagaaaacaacacaaaagtgtttaaagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctc 221  Q
    ||||||||||||||||| || ||||||| ||||||||||||||| ||||||| |||||||||||||||||| |||| |||||||| ||||||||||||||    
T  20373 catacaagaaaacaacataagagtgtttgaagctttagcaaaaatattgatcatcacaaagattccaagaagtcttcaaaagtgtaaatcaatatctctc 20472  T
Q  222 ttatctttt 230  Q
    |||||||||    
T  20473 ttatctttt 20481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 123 - 230
Target Start/End: Original strand, 14437870 - 14437978
Alignment:
Q  123 catacaagaaaacaacacaaaagtgtttaaagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctc 221  Q
    ||||||||||||||||| || ||||||| ||||||||||||||| ||||||| |||||||||||||||||| |||| |||||||| ||||||||||||||    
T  14437870 catacaagaaaacaacataagagtgtttgaagctttagcaaaaatattgatcatcacaaagattccaagaagtcttcaaaagtgtaaatcaatatctctc 14437969  T
Q  222 ttatctttt 230  Q
    |||||||||    
T  14437970 ttatctttt 14437978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 123 - 230
Target Start/End: Complemental strand, 26361953 - 26361845
Alignment:
Q  123 catacaagaaaacaacacaaaagtgtttaaagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctc 221  Q
    ||||||||||||||||| || ||||||| ||||||||||||||| ||||||| |||||||||||| ||||| |||| |||||||  ||||||||||||||    
T  26361953 catacaagaaaacaacataagagtgtttgaagctttagcaaaaatattgatcatcacaaagattctaagaagtcttcaaaagtgaaaatcaatatctctc 26361854  T
Q  222 ttatctttt 230  Q
    |||||||||    
T  26361853 ttatctttt 26361845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 97 - 225
Target Start/End: Original strand, 20851910 - 20852038
Alignment:
Q  97 tcaacattacttgcaacagtgcagaacatacaagaaaa-caacacaaaagtgttta-aagctttagcaaaaacattgatc-tcacaaagattccaagaaa 193  Q
    ||||||||||||||| |  |||| | |||||||||||| ||||| || |||||||  |||||||||||||||  |||||| ||||||||||||||||||     
T  20851910 tcaacattacttgcaccgttgcaaagcatacaagaaaaacaacataagagtgttttgaagctttagcaaaaa--ttgatcatcacaaagattccaagaag 20852007  T
Q  194 tctttaaaagtgtgaatcaatatctctcttat 225  Q
    ||||||||||||| ||||||| ||||||||||    
T  20852008 tctttaaaagtgtaaatcaat-tctctcttat 20852038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 2690006 - 2689853
Alignment:
Q  8 gtgggtcccaagacacgtgacacaagactattggtcacacttcaatggctacaagaggtcaagacactctgtaaatagaagcggaaggttcaacattact 107  Q
    ||||| |||| ||||| || || || || ||||||||| ||  || |||||||||||  ||||| ||||| |||||||||| | |||| |||||||||||    
T  2690006 gtggggcccaggacacatggcataacaccattggtcaccctctaacggctacaagagcccaaga-actctataaatagaagtgaaaggctcaacattact 2689908  T
Q  108 tgcaacagtgcagaacatacaagaaaacaacacaaaagtgtttaaagctttagca 162  Q
    |||| || |||| | |||||||||||||| |  |||||||||| |||||||||||    
T  2689907 tgcaccattgcaaagcatacaagaaaacatctgaaaagtgtttgaagctttagca 2689853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 165
Target Start/End: Complemental strand, 14893669 - 14893597
Alignment:
Q  92 aaggttcaacattacttgcaacagtgcagaacatacaagaaaacaacacaaaagtgtttaaagctttagcaaaa 165  Q
    |||| ||||||||||||||| || |||| | ||||||||||||||||| || | ||||| ||||||| ||||||    
T  14893669 aaggctcaacattacttgcaccattgcaaagcatacaagaaaacaaca-aagattgtttgaagcttttgcaaaa 14893597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 123 - 230
Target Start/End: Complemental strand, 5615069 - 5614961
Alignment:
Q  123 catacaagaaaacaacacaaaagtgtttaaagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctc 221  Q
    ||||||||||||||||| || ||||||| ||||||||||||||| ||||||| |||||||||||||||||| |||| |||||||| ||||||||||||||    
T  5615069 catacaagaaaacaacataagagtgtttgaagctttagcaaaaatattgatcatcacaaagattccaagaagtcttcaaaagtgtaaatcaatatctctc 5614970  T
Q  222 ttatctttt 230  Q
    |||||||||    
T  5614969 ttatctttt 5614961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 123 - 230
Target Start/End: Complemental strand, 13285319 - 13285211
Alignment:
Q  123 catacaagaaaacaacacaaaagtgtttaaagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctc 221  Q
    ||||||||||||||||| || ||||||| ||||||||||||||| ||||||| |||||||||||||||||| |||| |||||||| ||||||||||||||    
T  13285319 catacaagaaaacaacataagagtgtttgaagctttagcaaaaatattgatcatcacaaagattccaagaagtcttcaaaagtgtaaatcaatatctctc 13285220  T
Q  222 ttatctttt 230  Q
    |||||||||    
T  13285219 ttatctttt 13285211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 123 - 229
Target Start/End: Original strand, 41028047 - 41028154
Alignment:
Q  123 catacaagaaaacaacacaaaagtgtttaaagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctc 221  Q
    ||||||||||||||||| || ||||||| ||||||||||||||||||||||| |||||||||||||||||| |||| |||||||| ||||||||| ||||    
T  41028047 catacaagaaaacaacataagagtgtttgaagctttagcaaaaacattgatcatcacaaagattccaagaagtcttcaaaagtgtaaatcaatatttctc 41028146  T
Q  222 ttatcttt 229  Q
    ||||||||    
T  41028147 ttatcttt 41028154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 123 - 230
Target Start/End: Original strand, 31825167 - 31825275
Alignment:
Q  123 catacaagaaaacaacacaaaagtgtttaaagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctc 221  Q
    ||||||||||||||||| || ||||||| ||||||||||||||| ||||||| |||||||||||||||||| |||| |||||||  |||||||||||| |    
T  31825167 catacaagaaaacaacataagagtgtttgaagctttagcaaaaatattgatcatcacaaagattccaagaagtcttcaaaagtgcaaatcaatatctccc 31825266  T
Q  222 ttatctttt 230  Q
    |||||||||    
T  31825267 ttatctttt 31825275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 123 - 230
Target Start/End: Complemental strand, 12826953 - 12826845
Alignment:
Q  123 catacaagaaaacaacacaaaagtgtttaaagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctc 221  Q
    ||||||||||||||||| || ||||||| | |||||| |||||||||||||| |||||||||||| ||||| |||| |||||||| ||||||||| ||||    
T  12826953 catacaagaaaacaacataagagtgtttgacgctttaacaaaaacattgatcatcacaaagattctaagaagtcttcaaaagtgtaaatcaatatttctc 12826854  T
Q  222 ttatctttt 230  Q
    |||||||||    
T  12826853 ttatctttt 12826845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 123 - 231
Target Start/End: Original strand, 42595831 - 42595940
Alignment:
Q  123 catacaagaaaacaacacaaaagtgtttaaagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctc 221  Q
    |||||||| |||||||| || ||||||| || |||||||||||||||||||| |||||||||||||||||| | || |||||||| |||||| || ||||    
T  42595831 catacaaggaaacaacataagagtgtttgaaactttagcaaaaacattgatcatcacaaagattccaagaagtattcaaaagtgtaaatcaacatttctc 42595930  T
Q  222 ttatcttttt 231  Q
    ||||||||||    
T  42595931 ttatcttttt 42595940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 229
Target Start/End: Original strand, 12770422 - 12770642
Alignment:
Q  8 gtgggtcccaagacacgtgacacaagactattggtcacacttcaatggctacaagaggtcaagacactctgtaaatagaagcggaaggt-tcaacattac 106  Q
    ||||| |||| |||||||| || ||||| ||||||||| || |||   ||||||||| |||||| ||||| |||||||| |   ||||  ||| ||||||    
T  12770422 gtggggcccaggacacgtggcaaaagaccattggtcaccctccaacaactacaagagctcaaga-actctataaataga-gatcaaggcctcagcattac 12770519  T
Q  107 ttgcaacagtgcagaacatacaagaaaa-caacacaaaagtgttta-aagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaag 203  Q
    ||||| |  |||| | |||||||||||| ||||| || |||||||  |||||||||||||||  |||||| |||||||||||||||||| ||||||||||    
T  12770520 ttgcacctttgcaaagcatacaagaaaagcaacataagagtgttttgaagctttagcaaaaa--ttgatcgtcacaaagattccaagaagtctttaaaag 12770617  T
Q  204 tgtgaatcaatatctctcttatcttt 229  Q
    ||| ||||| | ||||||||||||||    
T  12770618 tgtaaatcagt-tctctcttatcttt 12770642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 134
Target Start/End: Complemental strand, 2991611 - 2991487
Alignment:
Q  9 tgggtcccaagacacgtgacacaagactattggtcacacttcaatggctacaagaggtcaagacactctgtaaatagaagcggaaggttcaacattactt 108  Q
    |||| |||||||||| |||||||| || ||||||||| || ||| |||||||||||  ||||| ||| | ||||||||||   |||||||| ||||||||    
T  2991611 tggggcccaagacacatgacacaacaccattggtcaccctccaacggctacaagagcccaaga-actttataaatagaagtaaaaggttcagcattactt 2991513  T
Q  109 gcaacagtgcagaacatacaagaaaa 134  Q
    ||| || |||| |  |||||||||||    
T  2991512 gcatcattgcaaagtatacaagaaaa 2991487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 9007437 - 9007502
Alignment:
Q  163 aaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctcttatctt 228  Q
    |||| ||||||| |||||||||||||||||| ||||||||||||| ||| ||| ||||| |||||||    
T  9007437 aaaaaattgatcatcacaaagattccaagaagtctttaaaagtgtaaataaat-tctctgttatctt 9007502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 15988224 - 15988172
Alignment:
Q  178 caaagattccaagaaatctttaaaagtgtgaatcaatatctctcttatcttttt 231  Q
    ||||||||||||||| |||||  |||||| ||||||| ||||||||||||||||    
T  15988224 caaagattccaagaagtcttttcaagtgtaaatcaat-tctctcttatcttttt 15988172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 131 - 231
Target Start/End: Original strand, 14475 - 14576
Alignment:
Q  131 aaaacaacacaaaagtgtttaaagctttagcaaaaacattgatct-cacaaagattccaagaaatctttaaaagtgtgaatcaatatctctcttatcttt 229  Q
    ||||||||| |  ||||||| |||||||||||||||||||||||  |||||||||||||  || |||| |||||||| ||||||||| ||||||||||||    
T  14475 aaaacaacatatgagtgtttgaagctttagcaaaaacattgatcaacacaaagattccagaaagtcttcaaaagtgtaaatcaatatttctcttatcttt 14574  T
Q  230 tt 231  Q
    ||    
T  14575 tt 14576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 14354 - 14406
Alignment:
Q  9 tgggtcccaagacacgtgacacaagactattggtcacacttcaatggctacaa 61  Q
    ||||||||||||||||||||| ||||| | ||||||| || ||| ||||||||    
T  14354 tgggtcccaagacacgtgacataagaccagtggtcactctccaacggctacaa 14406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 229
Target Start/End: Complemental strand, 6651 - 6520
Alignment:
Q  97 tcaacattacttgcaacagtgcagaacatacaagaaaa-caacacaaaagtgttta-aagctttagcaaaaacattgatc-tcacaaagattccaagaaa 193  Q
    ||||||| ||||||| || |||| | ||| |||||||| ||||| || |||||||  |||||||||||||||  |||||| ||||||||||||||||||     
T  6651 tcaacataacttgcaccattgcaaagcatgcaagaaaaacaacataagagtgttttgaagctttagcaaaaa--ttgatcatcacaaagattccaagaag 6554  T
Q  194 tctttaaaagtgtgaatcaatatctctcttatcttt 229  Q
    || |||||||||| ||||||| ||||||||||||||    
T  6553 tc-ttaaaagtgtaaatcaat-tctctcttatcttt 6520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0811 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0811
Description:

Target: scaffold0811; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 3065 - 2995
Alignment:
Q  153 agctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctcttat 225  Q
    ||||||||||||||  |||||| |||||||||||||||||| ||||||||||||| ||||||| ||||||||||    
T  3065 agctttagcaaaaa--ttgatcatcacaaagattccaagaagtctttaaaagtgtaaatcaat-tctctcttat 2995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 597 - 652
Alignment:
Q  22 acgtgacacaagactattggtcacacttcaatggctacaagaggtcaagacactct 77  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||| |||||| |||||    
T  597 acgtggcacaagactattggtcacactacaacggctacaagagttcaagaaactct 652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 11770 - 11844
Alignment:
Q  152 aagctttagcaaaaacattgatc-tcacaaagattccaagaaatctttaaaagtgtgaatcaatatctctcttatcttt 229  Q
    |||||||||||||||  |||||| |||||||||||||||||| || |||||||||| ||||||| ||||||||||||||    
T  11770 aagctttagcaaaaa--ttgatcatcacaaagattccaagaagtc-ttaaaagtgtaaatcaat-tctctcttatcttt 11844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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