View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10328_low_1 (Length: 657)
Name: NF10328_low_1
Description: NF10328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10328_low_1 |
 | |
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| [»] scaffold1135 (3 HSPs) |
| | |
|
| [»] scaffold0054 (3 HSPs) |
| | |
|
| [»] scaffold0450 (1 HSPs) |
| | |
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Alignment Details
Target: scaffold1135 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: scaffold1135
Description:
Target: scaffold1135; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 323 - 584
Target Start/End: Complemental strand, 1786 - 1538
Alignment:
| Q |
323 |
gagttccacatgtctagatatacataaacctttgtattgaccataaaagtctattaagaagaattcaaatcaaaatagttaaatttcaacctcattgtct |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1786 |
gagttccacatgtctagatatacataaacctttgtattgaccataaaagtctattaagaagaattcaaatcaaaattgttaaatttcaacctcattgtct |
1687 |
T |
|
| Q |
423 |
ttcttaatgttatctaggagtgggaaaaagtaaatcaaatcatttatgtcgttccgaagaaatattaaatgtacaacaacaaatgctcgtgtctttaaaa |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1686 |
ttcttaatgttatctaggagtgggaaaaagtaaatcaaatcatttatgatgttccgaagaaatattaaatgtacaacaacaaatgcttgtgtctttaaaa |
1587 |
T |
|
| Q |
523 |
caattttcagctttagccttcagctttagaacaaaagcaaagaaaaataaatttcaatgagc |
584 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1586 |
caattttcagct-------------ttagaacaaaagcaaagaaaaataaatttcaatgagc |
1538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1135; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 8 - 141
Target Start/End: Complemental strand, 2261 - 2128
Alignment:
| Q |
8 |
gagcacagagaaatcgacagcgacaacaaggatgtggttggagatcaaccttcagaaaaatctatcaagatgtaacggcgacgatatcagcgagaatggt |
107 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||| |
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|
| T |
2261 |
gagcacagaaaaatcgacagcgacaacaaggatgtggttggagatcaaccttccgaaaaatctatcaagatgtaacggcgacggcatcaacgagaatggt |
2162 |
T |
|
| Q |
108 |
tgtggaaatcatcttccctagagaaaatggaaca |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
2161 |
tgtggaaatcatcttccctagagaaaatggaaca |
2128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1135; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 188 - 322
Target Start/End: Complemental strand, 2078 - 1944
Alignment:
| Q |
188 |
atgtacaactttctttttctttttatcttcaagtatgacatggattattaagctatttcttttaataattaaatgtaccacacaagggtggtatgagtgg |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
2078 |
atgtacaactttctttttctttttatcttctggtatgacatggattattaagctatttcttttaataattaaatgtgccacacaagggtggtatgagtgg |
1979 |
T |
|
| Q |
288 |
tagagccacctaaggtggtctatctatccgtgctc |
322 |
Q |
| |
|
|||| |||||||||||| || ||||||| |||||| |
|
|
| T |
1978 |
tagaaccacctaaggtgttccatctatcagtgctc |
1944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 323 - 584
Target Start/End: Complemental strand, 1636 - 1388
Alignment:
| Q |
323 |
gagttccacatgtctagatatacataaacctttgtattgaccataaaagtctattaagaagaattcaaatcaaaatagttaaatttcaacctcattgtct |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1636 |
gagttccacatgtctagatatacataaacctttgtattgaccataaaagtctattaagaagaattcaaatcaaaattgttaaatttcaacctcattgtct |
1537 |
T |
|
| Q |
423 |
ttcttaatgttatctaggagtgggaaaaagtaaatcaaatcatttatgtcgttccgaagaaatattaaatgtacaacaacaaatgctcgtgtctttaaaa |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1536 |
ttcttaatgttatctaggagtgggaaaaagtaaatcaaatcatttatgatgttccgaagaaatattaaatgtacaacaacaaatgcttgtgtctttaaaa |
1437 |
T |
|
| Q |
523 |
caattttcagctttagccttcagctttagaacaaaagcaaagaaaaataaatttcaatgagc |
584 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1436 |
caattttcagct-------------ttagaacaaaagcaaagaaaaataaatttcaatgagc |
1388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 2111 - 1980
Alignment:
| Q |
8 |
gagcacagagaaatcgacagcgacaacaaggatgtggttggagatcaaccttcagaaaaatctatcaagatgtaacggcgacgatatcagcgagaatggt |
107 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2111 |
gagcacagaaaaatcgacagcgacaacaaggatgtggttggagatcaaccttccgaaaaatctatcaagatgtaacggcgacggcatcagcgagaatggt |
2012 |
T |
|
| Q |
108 |
tgtggaaatcatcttccctagagaaaatggaa |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
2011 |
tgtggaaatcatcttccctagagaaaatggaa |
1980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 188 - 322
Target Start/End: Complemental strand, 1928 - 1794
Alignment:
| Q |
188 |
atgtacaactttctttttctttttatcttcaagtatgacatggattattaagctatttcttttaataattaaatgtaccacacaagggtggtatgagtgg |
287 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1928 |
atgtagaactttctttttctttttatcttctggtatgacatggattattaagctatttcttttaataattaaatgtgccacacaagggtggtatgagtgg |
1829 |
T |
|
| Q |
288 |
tagagccacctaaggtggtctatctatccgtgctc |
322 |
Q |
| |
|
|||| |||||||||||| || ||||||| |||||| |
|
|
| T |
1828 |
tagaaccacctaaggtgatccatctatcagtgctc |
1794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 323 - 584
Target Start/End: Complemental strand, 22892410 - 22892162
Alignment:
| Q |
323 |
gagttccacatgtctagatatacataaacctttgtattgaccataaaagtctattaagaagaattcaaatcaaaatagttaaatttcaacctcattgtct |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
22892410 |
gagttccacatgtctagatatacataaacctttgtattgaccataaaagtctattaagaagaattcaaatcaaaattgttaaatttcaacctcattgtct |
22892311 |
T |
|
| Q |
423 |
ttcttaatgttatctaggagtgggaaaaagtaaatcaaatcatttatgtcgttccgaagaaatattaaatgtacaacaacaaatgctcgtgtctttaaaa |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
22892310 |
ttcttaatgttatctaggagtgggaaaaagtaaatcaaatcatttatgatgttccgaagaaatattaaatgtacaacaacaaatgcttgtgtctttaaaa |
22892211 |
T |
|
| Q |
523 |
caattttcagctttagccttcagctttagaacaaaagcaaagaaaaataaatttcaatgagc |
584 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22892210 |
caattttcagct-------------ttagaacaaaagcaaagaaaaataaatttcaatgagc |
22892162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 188 - 322
Target Start/End: Complemental strand, 22892702 - 22892568
Alignment:
| Q |
188 |
atgtacaactttctttttctttttatcttcaagtatgacatggattattaagctatttcttttaataattaaatgtaccacacaagggtggtatgagtgg |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
22892702 |
atgtacaactttctttttctttttatcttctggtatgacatggattattaagctatttcttttaataattaaatgtgccacacaagggtggtatgagtgg |
22892603 |
T |
|
| Q |
288 |
tagagccacctaaggtggtctatctatccgtgctc |
322 |
Q |
| |
|
|||| ||||||||||||||| ||||||| |||||| |
|
|
| T |
22892602 |
tagaaccacctaaggtggtccatctatcagtgctc |
22892568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 323 - 433
Target Start/End: Complemental strand, 22914021 - 22913911
Alignment:
| Q |
323 |
gagttccacatgtctagatatacataaacctttgtattgaccataaaagtctattaagaagaattcaaatcaaaatagttaaatttcaacctcattgtct |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22914021 |
gagttccacatgtctagatatacataaacctttgtattgaccataaaagtctattaagaagaattcaaatcaaaatagttaaatttcaacctcattgtct |
22913922 |
T |
|
| Q |
423 |
ttcttaatgtt |
433 |
Q |
| |
|
||||||||||| |
|
|
| T |
22913921 |
ttcttaatgtt |
22913911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 8 - 141
Target Start/End: Complemental strand, 22892903 - 22892770
Alignment:
| Q |
8 |
gagcacagagaaatcgacagcgacaacaaggatgtggttggagatcaaccttcagaaaaatctatcaagatgtaacggcgacgatatcagcgagaatggt |
107 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
22892903 |
gagcacagaaaaatcgacagtgacaacaaggatgtggttggagatcaaccttccgaaaaatctatcaagatgtaacggcgacggcatcaacgagaatggt |
22892804 |
T |
|
| Q |
108 |
tgtggaaatcatcttccctagagaaaatggaaca |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
22892803 |
tgtggaaatcatcttccctagagaaaatggaaca |
22892770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 473 - 584
Target Start/End: Complemental strand, 22913913 - 22913802
Alignment:
| Q |
473 |
gttccgaagaaatattaaatgtacaacaacaaatgctcgtgtctttaaaacaattttcagctttagccttcagctttagaacaaaagcaaagaaaaataa |
572 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22913913 |
gttccgaagaaatattaaatgtacaacaacaaatgcttgtgtctttaaaacaatattcagctttagccttcagctttagaacaaaagcaaagaaaaataa |
22913814 |
T |
|
| Q |
573 |
atttcaatgagc |
584 |
Q |
| |
|
|||||||||||| |
|
|
| T |
22913813 |
atttcaatgagc |
22913802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 26531644 - 26531777
Alignment:
| Q |
8 |
gagcacagagaaatcgacagcgacaacaaggatgtggttggagatcaaccttcagaaaaatctatcaagatgtaacggcgacgatatcagcgagaatggt |
107 |
Q |
| |
|
|||| ||||||||||||| || || |||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||| || ||| |||||||||| |
|
|
| T |
26531644 |
gagcgcagagaaatcgaccgcaacggcaaggaagtggttggagaccaaccttccgaaaaatctatcaagatgtaacgacgaggacatcgacgagaatggt |
26531743 |
T |
|
| Q |
108 |
tgtggaaatcatcttccctagagaaaatggaaca |
141 |
Q |
| |
|
|||||||||||||| || ||||||||||||||| |
|
|
| T |
26531744 |
ggtggaaatcatcttgccgagagaaaatggaaca |
26531777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 197 - 312
Target Start/End: Original strand, 26531834 - 26531947
Alignment:
| Q |
197 |
tttctttttctttttatcttcaagtatgacatggattattaagctatttcttttaataattaaatgtaccacacaagggtggt--atgagtggtagagcc |
294 |
Q |
| |
|
||||||||| ||||| ||||| ||||||||||||||| ||| |||||||||||||| |||||||| ||||||||||||||| |||||||||| |||| |
|
|
| T |
26531834 |
tttcttttttttttt-tcttctggtatgacatggatta--aag-tatttcttttaatatttaaatgtgccacacaagggtggtacatgagtggtaaagcc |
26531929 |
T |
|
| Q |
295 |
acctaaggtggtctatct |
312 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
26531930 |
acctaaggtggtctatct |
26531947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 4e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 8 - 141
Target Start/End: Complemental strand, 194023 - 193890
Alignment:
| Q |
8 |
gagcacagagaaatcgacagcgacaacaaggatgtggttggagatcaaccttcagaaaaatctatcaagatgtaacggcgacgatatcagcgagaatggt |
107 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
194023 |
gagcacagagaaatcgacagcgataacaaggatgtgattggagatcaaccttccgaaaaatctatcaagatgtaacgacgacggcatcagcgagaatggt |
193924 |
T |
|
| Q |
108 |
tgtggaaatcatcttccctagagaaaatggaaca |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
193923 |
tgtggaaatcatcttccctagagaaaatggaaca |
193890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 197 - 322
Target Start/End: Complemental strand, 193825 - 193700
Alignment:
| Q |
197 |
tttctttttctttttatcttcaagtatgacatggattattaagctatttcttttaataattaaatgtaccacacaagggtggtatgagtggtagagccac |
296 |
Q |
| |
|
||||||||| ||||||| ||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
193825 |
tttctttttatttttattttctggcatgacatggattattaagctatttcttttaataattaaatgtgccacacaagggtggtatgagtggtagagccac |
193726 |
T |
|
| Q |
297 |
ctaaggtggtctatctatccgtgctc |
322 |
Q |
| |
|
||||| ||||| ||||||| |||||| |
|
|
| T |
193725 |
ctaagatggtccatctatcagtgctc |
193700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0450 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0450
Description:
Target: scaffold0450; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 612 - 641
Target Start/End: Original strand, 7598 - 7627
Alignment:
| Q |
612 |
cagttcaaactgccaaagatgctcaccatg |
641 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
7598 |
cagttcaaactgccaaagatgctcaccatg |
7627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 24996590 - 24996514
Alignment:
| Q |
15 |
gagaaatcgacagcgacaacaaggatgtggttggagatcaaccttcagaaaaatctatcaagatgtaacggcgacga |
91 |
Q |
| |
|
|||||||||||| ||| |||||||||||| ||||||| ||||| | ||||| ||||||| ||||||||||||| |
|
|
| T |
24996590 |
gagaaatcgacaacgatgacaaggatgtgggaggagatcgacctttcaagaaatccatcaagacgtaacggcgacga |
24996514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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