View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10328_low_3 (Length: 446)

Name: NF10328_low_3
Description: NF10328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10328_low_3
NF10328_low_3
[»] chr1 (6 HSPs)
chr1 (16-432)||(6458233-6458637)
chr1 (102-416)||(30626280-30626592)
chr1 (253-298)||(3073811-3073856)
chr1 (54-116)||(3073985-3074049)
chr1 (69-175)||(31873792-31873898)
chr1 (253-301)||(22191821-22191869)
[»] chr3 (8 HSPs)
chr3 (231-324)||(28308518-28308611)
chr3 (102-422)||(40413560-40413870)
chr3 (234-442)||(17763105-17763313)
chr3 (234-442)||(19064425-19064633)
chr3 (261-298)||(6176526-6176563)
chr3 (261-298)||(14904214-14904251)
chr3 (102-147)||(17762975-17763020)
chr3 (102-147)||(19064295-19064340)
[»] chr7 (9 HSPs)
chr7 (113-416)||(9605423-9605724)
chr7 (113-416)||(9832994-9833295)
chr7 (236-323)||(27601944-27602031)
chr7 (105-152)||(23826416-23826463)
chr7 (354-416)||(39647278-39647340)
chr7 (54-142)||(27601763-27601853)
chr7 (279-341)||(2820736-2820798)
chr7 (253-298)||(22819757-22819802)
chr7 (253-341)||(45201639-45201727)
[»] chr2 (6 HSPs)
chr2 (16-301)||(33276166-33276451)
chr2 (234-416)||(20003903-20004085)
chr2 (253-355)||(21566585-21566687)
chr2 (108-150)||(20004163-20004205)
chr2 (253-418)||(32191396-32191561)
chr2 (279-312)||(15127679-15127712)
[»] chr6 (4 HSPs)
chr6 (103-190)||(2987752-2987837)
chr6 (258-355)||(333720-333817)
chr6 (81-146)||(6040357-6040424)
chr6 (354-394)||(24957479-24957519)
[»] chr8 (4 HSPs)
chr8 (30-152)||(32734666-32734788)
chr8 (18-102)||(4331477-4331561)
chr8 (54-101)||(28993070-28993117)
chr8 (330-390)||(32734426-32734486)
[»] chr5 (2 HSPs)
chr5 (102-151)||(2816418-2816467)
chr5 (16-102)||(14852332-14852418)
[»] chr4 (3 HSPs)
chr4 (258-325)||(39936879-39936946)
chr4 (54-151)||(48805243-48805342)
chr4 (261-298)||(8487029-8487066)


Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 432
Target Start/End: Original strand, 6458233 - 6458637
Alignment:
Q  16 atatgtgcgatttggggtgggaggaaggagggatggcctggcaatggcgtcgtcggttgtggacttgggaggaggagctgttaggggtgtaggattttac 115  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6458233 atatgtgtgatttggggtgggagaaaggagggatggcctggcaatggcgtcgtcggttgtggacttgggagaaggagctgttaggggtgtaggattttac 6458332  T
Q  116 ttcacgatatttctttgcagcataattctacatatatcagtggcattggaggctagatcctagtggtggttattcggttcggggcgtgtatacggtgctt 215  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  6458333 ttcacgatatttccttgcagcataattctacatatatcagtggcattggaggctagatcctagtggtggttatttggtttggggcgtgtatacggtgctt 6458432  T
Q  216 actagtcaagagtcttatagctctgatgctacttcaaatttcatttggcacaaacaggttctcttgaaggtttctatttttgcttgaggacttcttcgga 315  Q
    |||||||||||||||||||||||||||||||||||||     ||||||||||||||||||| |||||  |||||||||||||||||| ||||||||||||    
T  6458433 actagtcaagagtcttatagctctgatgctacttcaa-----atttggcacaaacaggttcccttgacagtttctatttttgcttgaagacttcttcgga 6458527  T
Q  316 gtaggttgccaatgaaggataatttgatgacgcgcgacattctttctaacgacaatcagttattcgtgactgggtgtggaggcttcgagactgctcaaca 415  Q
    ||||||||||||||||||||||||||       | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6458528 gtaggttgccaatgaaggataatttg-------gtgacattctttctaacgacaatcagttattcgtgactgggtgtggaggcttcgagactgctcaaca 6458620  T
Q  416 tctatttctgttttgcc 432  Q
    |||| || |||||||||    
T  6458621 tctagttttgttttgcc 6458637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 416
Target Start/End: Complemental strand, 30626592 - 30626280
Alignment:
Q  102 gtgtaggattttacttcacgatatttctttgcagcataattctacatatatcagtggcattggaggctagatcctagtggtggttattcggttcggggcg 201  Q
    |||| ||||||||||||||||||||||||||||  | ||||||||  | |||||||||| ||| |||| ||||||| ||  ||||| ||  |  |||| |    
T  30626592 gtgttggattttacttcacgatatttctttgcaataaaattctac--agatcagtggcaatggcggcttgatcctattgacggttaatcaatcaggggtg 30626495  T
Q  202 tgtatacggtgcttactagtcaagagtcttatagctctgatgctacttcaaatttcatttggcacaaacaggttctcttgaaggtttctatttttgcttg 301  Q
    |||| | | |||| |||||||||||| |    | |||||| | ||||  |||||| |||| ||| |||||||||| |||||| ||||| ||||| || ||    
T  30626494 tgtacaggatgctcactagtcaagaggccccaaactctgacgttactataaatttaattttgcataaacaggttcccttgaaagtttcgattttggcctg 30626395  T
Q  302 aggacttcttcggagtaggttgccaatgaaggataatttgatgacgcgcgacattctttctaacgacaatcagttattcgtgactgggtgtggaggcttc 401  Q
      ||||  |||| |  ||| | || |  ||||||||| | ||| || || ||||| ||||| || | ||||||||||  |||| || ||||||||| ||     
T  30626394 gagactcattcgtaacagggtaccgacaaaggataatctaatggcgtgcaacattatttctcacaataatcagttatatgtgattgtgtgtggaggatta 30626295  T
Q  402 gagactgctcaacat 416  Q
    |||||||||||||||    
T  30626294 gagactgctcaacat 30626280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 3073856 - 3073811
Alignment:
Q  253 atttcatttggcacaaacaggttctcttgaaggtttctatttttgc 298  Q
    |||| ||||||||||||||||||| ||||||||| |||||||||||    
T  3073856 atttaatttggcacaaacaggttcccttgaaggtctctatttttgc 3073811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 3074049 - 3073985
Alignment:
Q  54 tggcaatggcgtcgtcggttgtggacttgggaggaggagctgttaggg--gtgtaggattttact 116  Q
    |||||||||||| | ||||||||| | |||||||||||| ||||||||  |||||||||||||||    
T  3074049 tggcaatggcgtaggcggttgtgggcctgggaggaggagttgttaggggagtgtaggattttact 3073985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 175
Target Start/End: Original strand, 31873792 - 31873898
Alignment:
Q  69 cggttgtggacttgggaggaggagctgttaggg--gtgtaggattttacttcacgatatttctttgcagcataattctacatatatcagtggcattggag 166  Q
    |||||||||  ||||||||| ||| ||||||||  |||||||||||||||    || |||||||||||||| ||||||||  | ||||||||  ||||||    
T  31873792 cggttgtgggtttgggaggatgagttgttagggcagtgtaggattttactatctgacatttctttgcagcaaaattctac--agatcagtgggtttggag 31873889  T
Q  167 gctagatcc 175  Q
    ||| |||||    
T  31873890 gcttgatcc 31873898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 301
Target Start/End: Original strand, 22191821 - 22191869
Alignment:
Q  253 atttcatttggcacaaacaggttctcttgaaggtttctatttttgcttg 301  Q
    |||| |||||||| ||||||||||  ||||||||||||||| |||||||    
T  22191821 atttaatttggcataaacaggttcctttgaaggtttctattcttgcttg 22191869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 231 - 324
Target Start/End: Complemental strand, 28308611 - 28308518
Alignment:
Q  231 tatagctctgatgctacttcaaatttcatttggcacaaacaggttctcttgaaggtttctatttttgcttgaggacttcttcggagtaggttgc 324  Q
    |||| |||| ||||||||||| |||  ||||||||||| ||||||| |||||||||||||||| |||||||| |||||||||||| ||||||||    
T  28308611 tataactctaatgctacttcagattgaatttggcacaagcaggttcccttgaaggtttctattcttgcttgaagacttcttcggaataggttgc 28308518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 102 - 422
Target Start/End: Original strand, 40413560 - 40413870
Alignment:
Q  102 gtgtaggattttacttcacgatatttctttgcagcataattctacatatatcagtggcattggaggctagatcctagtggtggttattcggttcggggcg 201  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||  |||||||||||| ||| |||| ||||||| |||        |||||  ||| |    
T  40413560 gtgtagaattttacttcacgatatttctttgcagtataattctac--atatcagtggcagtggcggcttgatcctattgg--------cggttacgggtg 40413649  T
Q  202 tgtatacggtgcttactagtcaagagtcttatagctctgatgctacttcaaatttcatttggcacaaacaggttctcttgaaggtttctatttttgcttg 301  Q
    |||| | | ||||||||||  | ||| |    |||||||||| || | || |||| |||||||| |||||||||  |||||| ||||| ||||||||||     
T  40413650 tgtacaagatgcttactagcgaggaggccccaagctctgatgttattacagattttatttggcataaacaggtttccttgaatgtttcaatttttgcttt 40413749  T
Q  302 aggacttcttcggagtaggttgccaatgaaggataatttgatgacgcgcgacattctttctaacgacaatcagttattcgtgactgggtgtggaggcttc 401  Q
    | |||| |||| || ||| || || | ||| |||||||||||| ||| | || || ||||| || | || |||||||  ||||||  ||||||||| ||     
T  40413750 aagactccttcagaatagtttaccgacgaaagataatttgatggcgcacaacgttatttctcacaataaccagttatgtgtgactcagtgtggagggtta 40413849  T
Q  402 gagactgctcaacatctattt 422  Q
    |||| |||||||||| |||||    
T  40413850 gagattgctcaacatatattt 40413870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 234 - 442
Target Start/End: Original strand, 17763105 - 17763313
Alignment:
Q  234 agctctgatgctacttcaaatttcatttggcacaaacaggttctcttgaaggtttctatttttgcttgaggacttcttcggagtaggttgccaatgaagg 333  Q
    |||||||||| || | || |||| |||||||| |||||||||| ||||| |||| ||||||| | |||  || | ||| | |  ||||| || | |||||    
T  17763105 agctctgatgttattacatattttatttggcataaacaggttcccttgatggttactattttggtttgtagattcctttgaaacaggttaccgacgaagg 17763204  T
Q  334 ataatttgatgacgcgcgacattctttctaacgacaatcagttattcgtgactgggtgtggaggcttcgagactgctcaacatctatttctgttttgcct 433  Q
    ||||| ||||| | ||| ||||| ||||| |||| || |||||||  ||||||||||||||||| || || |||||||||||| | ||| ||| ||  ||    
T  17763205 ataatctgatggcacgcaacattatttctcacgataagcagttatgtgtgactgggtgtggagggttagatactgctcaacatatgtttgtgtcttatct 17763304  T
Q  434 ttgcttctc 442  Q
    |||||||||    
T  17763305 ttgcttctc 17763313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 234 - 442
Target Start/End: Original strand, 19064425 - 19064633
Alignment:
Q  234 agctctgatgctacttcaaatttcatttggcacaaacaggttctcttgaaggtttctatttttgcttgaggacttcttcggagtaggttgccaatgaagg 333  Q
    |||||||||| || | || |||| |||||||| |||||||||| ||||| |||| ||||||| | |||  || | ||| | |  ||||| || | |||||    
T  19064425 agctctgatgttattacatattttatttggcataaacaggttcccttgatggttactattttggtttgtagattcctttgaaacaggttaccgacgaagg 19064524  T
Q  334 ataatttgatgacgcgcgacattctttctaacgacaatcagttattcgtgactgggtgtggaggcttcgagactgctcaacatctatttctgttttgcct 433  Q
    ||||| ||||| | ||| ||||| ||||| |||| || |||||||  ||||||||||||||||| || || |||||||||||| | ||| ||| ||  ||    
T  19064525 ataatctgatggcacgcaacattatttctcacgataagcagttatgtgtgactgggtgtggagggttagatactgctcaacatatgtttgtgtcttatct 19064624  T
Q  434 ttgcttctc 442  Q
    |||||||||    
T  19064625 ttgcttctc 19064633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 6176526 - 6176563
Alignment:
Q  261 tggcacaaacaggttctcttgaaggtttctatttttgc 298  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  6176526 tggcacaaacaggttcccttgaaggtttctgtttttgc 6176563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 14904214 - 14904251
Alignment:
Q  261 tggcacaaacaggttctcttgaaggtttctatttttgc 298  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  14904214 tggcacaaacaggttcccttgaaggtttccatttttgc 14904251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 17762975 - 17763020
Alignment:
Q  102 gtgtaggattttacttcacgatatttctttgcagcataattctaca 147  Q
    |||||| |||||||||||||||||||||||||   |||||||||||    
T  17762975 gtgtagaattttacttcacgatatttctttgcgatataattctaca 17763020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 19064295 - 19064340
Alignment:
Q  102 gtgtaggattttacttcacgatatttctttgcagcataattctaca 147  Q
    |||||| |||||||||||||||||||||||||   |||||||||||    
T  19064295 gtgtagaattttacttcacgatatttctttgcgatataattctaca 19064340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 113 - 416
Target Start/End: Original strand, 9605423 - 9605724
Alignment:
Q  113 tacttcacgatatttctttgcagcataattctacatatatcagtggcattggaggctagatcctagtggtggttattcggttcggggcgtgtatacggtg 212  Q
    ||||||||||||||||||||||||||||||||| | ||||  ||| | ||||||| | ||||| | |  ||||||||||||| |||||||||||  | ||    
T  9605423 tacttcacgatatttctttgcagcataattctatagatat--gtgactttggaggatcgatccgatttatggttattcggttaggggcgtgtatcagatg 9605520  T
Q  213 cttactagtcaagagtcttatagctctgatgctacttcaaatttcatttggcacaaacaggttctcttgaaggtttctatttttgcttgaggacttcttc 312  Q
     |||| |   |  || ||   | | |||||| |||| |||| ||||||||||| || |||||||  |||||||| || ||||| |||||  ||||  |||    
T  9605521 tttaccaacgagaagcctgcgatcgctgatgttactacaaacttcatttggcataagcaggttcctttgaaggtctcgattttggcttggagactcattc 9605620  T
Q  313 ggagtaggttgccaatgaaggataatttgatgacgcgcgacattctttctaacgacaatcagttattcgtgactgggtgtggaggcttcgagactgctca 412  Q
    |||  ||||| |  ||||||||||||||||||  |||||  | ||||||| |||| ||||||||||  |||||||||||||| ||  | |||| ||||||    
T  9605621 ggaacaggttactgatgaaggataatttgatggtgcgcggtactctttctcacgataatcagttatgtgtgactgggtgtggtggtctggagattgctca 9605720  T
Q  413 acat 416  Q
    ||||    
T  9605721 acat 9605724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 113 - 416
Target Start/End: Original strand, 9832994 - 9833295
Alignment:
Q  113 tacttcacgatatttctttgcagcataattctacatatatcagtggcattggaggctagatcctagtggtggttattcggttcggggcgtgtatacggtg 212  Q
    ||||||||||||||||||||||||||||||||| | ||||  ||| | ||||||| | ||||| | |  ||||||||||||| |||||||||||  | ||    
T  9832994 tacttcacgatatttctttgcagcataattctatagatat--gtgactttggaggatcgatccgatttatggttattcggttaggggcgtgtatcagatg 9833091  T
Q  213 cttactagtcaagagtcttatagctctgatgctacttcaaatttcatttggcacaaacaggttctcttgaaggtttctatttttgcttgaggacttcttc 312  Q
     |||| |   |  || ||   | | |||||| |||| |||| ||||||||||| || |||||||  |||||||| || ||||| |||||  ||||  |||    
T  9833092 tttaccaacgagaagcctgcgatcgctgatgttactacaaacttcatttggcataagcaggttcctttgaaggtctcgattttggcttggagactcattc 9833191  T
Q  313 ggagtaggttgccaatgaaggataatttgatgacgcgcgacattctttctaacgacaatcagttattcgtgactgggtgtggaggcttcgagactgctca 412  Q
    |||  ||||| |  ||||||||||||||||||  |||||  | ||||||| |||| ||||||||||  |||||||||||||| ||  | |||| ||||||    
T  9833192 ggaacaggttactgatgaaggataatttgatggtgcgcggtactctttctcacgataatcagttatgtgtgactgggtgtggtggtctggagattgctca 9833291  T
Q  413 acat 416  Q
    ||||    
T  9833292 acat 9833295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 236 - 323
Target Start/End: Original strand, 27601944 - 27602031
Alignment:
Q  236 ctctgatgctacttcaaatttcatttggcacaaacaggttctcttgaaggtttctatttttgcttgaggacttcttcggagtaggttg 323  Q
    |||| ||||||||||| |||| ||||||||||||||||||  |||||||||||||||| |||||||  || ||||||| | |||||||    
T  27601944 ctctaatgctacttcagatttaatttggcacaaacaggtttccttgaaggtttctattcttgcttggagagttcttcgaaataggttg 27602031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 152
Target Start/End: Original strand, 23826416 - 23826463
Alignment:
Q  105 taggattttacttcacgatatttctttgcagcataattctacatatat 152  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||    
T  23826416 taggattttacttcacgatacttctttgcaacataattctacatatat 23826463  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 416
Target Start/End: Original strand, 39647278 - 39647340
Alignment:
Q  354 attctttctaacgacaatcagttattcgtgactgggtgtggaggcttcgagactgctcaacat 416  Q
    ||||||||| |||||||||||||||  |||| ||||||||| || || |||||||||||||||    
T  39647278 attctttctcacgacaatcagttatgtgtgattgggtgtggtggtttggagactgctcaacat 39647340  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 142
Target Start/End: Original strand, 27601763 - 27601853
Alignment:
Q  54 tggcaatggcgtcgtcggttgtggacttgggaggaggagctgttagggg--tgtaggattttacttcacgatatttctttgcagcataatt 142  Q
    ||||| ||||| ||| |||||||| | ||||||||||||  ||||||||  |||| ||||||||||||  || ||||| ||||||||||||    
T  27601763 tggcagtggcggcgtaggttgtgggcgtgggaggaggagaagttaggggagtgtaagattttacttcataatttttctctgcagcataatt 27601853  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 341
Target Start/End: Original strand, 2820736 - 2820798
Alignment:
Q  279 ttgaaggtttctatttttgcttgaggacttcttcggagtaggttgccaatgaaggataatttg 341  Q
    ||||||||||||||||||| |||| |||||||||| | | ||||||||   ||||||||||||    
T  2820736 ttgaaggtttctatttttgtttgaagacttcttcgaaattggttgccatcaaaggataatttg 2820798  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 298
Target Start/End: Original strand, 22819757 - 22819802
Alignment:
Q  253 atttcatttggcacaaacaggttctcttgaaggtttctatttttgc 298  Q
    |||| |||||||| |||||||||| ||||||||| |||||||||||    
T  22819757 atttaatttggcataaacaggttcccttgaaggtatctatttttgc 22819802  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 341
Target Start/End: Complemental strand, 45201727 - 45201639
Alignment:
Q  253 atttcatttggcacaaacaggttctcttgaaggtttctatttttgcttgaggacttcttcggagtaggttgccaatgaaggataatttg 341  Q
    |||| |||| |||||||||| || ||||||||||||||||| |||| ||  |||| |||| || ||| ||||  | |||||||||||||    
T  45201727 atttaattttgcacaaacagattttcttgaaggtttctattcttgcatggagactccttcagaatagattgctgacgaaggataatttg 45201639  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 301
Target Start/End: Original strand, 33276166 - 33276451
Alignment:
Q  16 atatgtgcgatttggggtgggaggaaggagggatggcctggcaatggcgtcgtcggttgtggacttgggaggaggagctgtt--aggggtgtaggatttt 113  Q
    ||||||| | ||| |||||||||||||||||   ||| ||||| |||||||||||||||| | | |||||||||||  ||||  ||| |||||||| |||    
T  33276166 atatgtgtggtttagggtgggaggaaggaggtgcggcttggcagtggcgtcgtcggttgtaggcatgggaggaggaattgttaaaggagtgtaggacttt 33276265  T
Q  114 acttcacgatatttctttgcagcataattctacatatatcagtggcattggaggctagatcctagtggtggttattcggttcggggcgtgtatacggtgc 213  Q
    |||||| ||||||||||||||   ||||| |  ||  |||||||| | ||||||   |||| | | ||||| || ||| ||  ||| |||||||   | |    
T  33276266 acttcatgatatttctttgcaatctaatttt--atggatcagtggtagtggaggtatgatcattgcggtggctactcgattaagggtgtgtataaatttc 33276363  T
Q  214 ttactagtcaagagtcttatagctctgatgctacttcaaatttcatttggcacaaacaggttctcttgaaggtttctatttttgcttg 301  Q
    | |||||||||||||||||||    ||  ||||| ||| || ||||||| |||| |||||||| |||||||||||||||||| |||||    
T  33276364 tcactagtcaagagtcttataatgttgcagctacctcatatatcatttgtcacagacaggttcccttgaaggtttctattttggcttg 33276451  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 234 - 416
Target Start/End: Complemental strand, 20004085 - 20003903
Alignment:
Q  234 agctctgatgctacttcaaatttcatttggcacaaacaggttctcttgaaggtttctatttttgcttgaggacttcttcggagtaggttgccaatgaagg 333  Q
    |||||||||| || | ||||||| |||||||| |||||| ||   ||||||||||| ||||| |||||   ||| |||||||  | |||  | | |||||    
T  20004085 agctctgatgttattacaaattttatttggcaaaaacagttttcgttgaaggtttcgattttggcttggaaactccttcggaacaagttatcgacgaagg 20003986  T
Q  334 ataatttgatgacgcgcgacattctttctaacgacaatcagttattcgtgactgggtgtggaggcttcgagactgctcaacat 416  Q
    ||||| ||||| ||| ||||||| ||||||||||  ||||| |||  ||||||||||||| ||| || |||||| ||||||||    
T  20003985 ataatatgatggcgcacgacattatttctaacgatgatcagctatgagtgactgggtgtgaagggttagagacttctcaacat 20003903  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 253 - 355
Target Start/End: Original strand, 21566585 - 21566687
Alignment:
Q  253 atttcatttggcacaaacaggttctcttgaaggtttctatttttgcttgaggacttcttcggagtaggttgccaatgaaggataatttgatgacgcgcga 352  Q
    |||| |||||||  |||||||||| ||||||||||| ||||| ||||||| || ||||||||| ||||||||  | ||||| ||| ||| || |||||||    
T  21566585 atttaatttggcttaaacaggttcccttgaaggtttttatttctgcttgaagagttcttcggaataggttgctgacgaaggttaacttggtggcgcgcga 21566684  T
Q  353 cat 355  Q
    |||    
T  21566685 cat 21566687  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 150
Target Start/End: Complemental strand, 20004205 - 20004163
Alignment:
Q  108 gattttacttcacgatatttctttgcagcataattctacatat 150  Q
    |||||||||||| ||||||||||||||| ||||||||||||||    
T  20004205 gattttacttcaagatatttctttgcagtataattctacatat 20004163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 418
Target Start/End: Complemental strand, 32191561 - 32191396
Alignment:
Q  253 atttcatttggcacaaacaggttctcttgaaggtttctatttttgcttgaggacttcttcggagtaggttgccaatgaaggataatttgatgacgcgcga 352  Q
    |||| |||||||| |||||||||| |||||||||||| |||||| | |   |||| |||| ||   |||| || | |||||||||| ||||| | ||||     
T  32191561 atttaatttggcataaacaggttcccttgaaggtttcaattttttcctagagactccttcagaaccggttaccgacgaaggataatctgatggcacgcgt 32191462  T
Q  353 cattctttctaacgacaatcagttattcgtgactgggtgtggaggcttcgagactgctcaacatct 418  Q
     ||| ||| |  | | ||||||||||  ||||||||||||||||  || |||||||||||||||||    
T  32191461 aattatttatcgcaataatcagttatgtgtgactgggtgtggagagttagagactgctcaacatct 32191396  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 312
Target Start/End: Original strand, 15127679 - 15127712
Alignment:
Q  279 ttgaaggtttctatttttgcttgaggacttcttc 312  Q
    |||||||||||||||||||||||| |||||||||    
T  15127679 ttgaaggtttctatttttgcttgatgacttcttc 15127712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 103 - 190
Target Start/End: Original strand, 2987752 - 2987837
Alignment:
Q  103 tgtaggattttacttcacgatatttctttgcagcataattctacatatatcagtggcattggaggctagatcctagtggtggttattc 190  Q
    |||||||||||||||||||||||||||||||| | |||||||||  |||||||||||| ||  || | ||||||| | ||||||||||    
T  2987752 tgtaggattttacttcacgatatttctttgcaacttaattctac--atatcagtggcagtgacggattgatcctattagtggttattc 2987837  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 333720 - 333817
Alignment:
Q  258 atttggcacaaacaggttctcttgaaggtttctatttttgcttgaggacttcttcggagtaggttgccaatgaaggataatttgatgacgcgcgacat 355  Q
    ||||| || |||||| || || |||||||||||||||||| |||  |||||||||||| |||||| || |  ||||| || ||| || ||||||||||    
T  333720 atttgacataaacagattttcctgaaggtttctatttttgtttggagacttcttcggaataggtttccgacaaaggacaacttggtggcgcgcgacat 333817  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 146
Target Start/End: Complemental strand, 6040424 - 6040357
Alignment:
Q  81 tgggaggaggagctgttagggg--tgtaggattttacttcacgatatttctttgcagcataattctac 146  Q
    |||||||| ||||| |||||||  ||||||||||| ||||| |  |||||||||||| ||||||||||    
T  6040424 tgggaggatgagctcttaggggagtgtaggattttgcttcatgccatttctttgcagaataattctac 6040357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 394
Target Start/End: Complemental strand, 24957519 - 24957479
Alignment:
Q  354 attctttctaacgacaatcagttattcgtgactgggtgtgg 394  Q
    ||||||||| |||||||||||||||  ||||||||||||||    
T  24957519 attctttctcacgacaatcagttatgtgtgactgggtgtgg 24957479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 152
Target Start/End: Complemental strand, 32734788 - 32734666
Alignment:
Q  30 gggtgggaggaaggagggatggcctggcaatggcgtcgtcggttgtggacttgggaggaggagctgttagggg--tgtaggattttacttcacgatattt 127  Q
    ||||||||||| || |||  || |||||||||||| | ||| |  ||| |||||||||||||  |||||| ||  |||  ||||||||| ||||||||||    
T  32734788 gggtgggaggatggtggggcggtctggcaatggcg-cttcgataatgggcttgggaggaggacttgttagaggagtgtgtgattttact-cacgatattt 32734691  T
Q  128 ctttgcagcataattctacatatat 152  Q
    |||||||||||||||||||||||||    
T  32734690 ctttgcagcataattctacatatat 32734666  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 4331561 - 4331477
Alignment:
Q  18 atgtgcgatttggggtgggaggaaggagggatggcctggcaatggcgtcgtcggttgtggacttgggaggaggagctgttagggg 102  Q
    |||||||||||||| ||||||||||||||| |||| ||||| ||| |  | ||||||||| | || ||||||||| |||||||||    
T  4331561 atgtgcgatttgggatgggaggaaggaggggtggcttggcagtggtggtggcggttgtgggcgtgagaggaggagatgttagggg 4331477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 28993070 - 28993117
Alignment:
Q  54 tggcaatggcgtcgtcggttgtggacttgggaggaggagctgttaggg 101  Q
    ||||| |||||||| |||||||||||||||||||||||| ||||||||    
T  28993070 tggcagtggcgtcggcggttgtggacttgggaggaggagttgttaggg 28993117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 390
Target Start/End: Complemental strand, 32734486 - 32734426
Alignment:
Q  330 aaggataatttgatgacgcgcgacattctttctaacgacaatcagttattcgtgactgggt 390  Q
    |||||||||||| ||  |||||| ||||||||| | |||||||||||||  ||||||||||    
T  32734486 aaggataatttgttggtgcgcgatattctttctcatgacaatcagttatgtgtgactgggt 32734426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 2816418 - 2816467
Alignment:
Q  102 gtgtaggattttacttcacgatatttctttgcagcataattctacatata 151  Q
    ||||||| |||||||||| ||||||||||||||| |||||||||||||||    
T  2816418 gtgtagggttttacttcatgatatttctttgcagtataattctacatata 2816467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 14852332 - 14852418
Alignment:
Q  16 atatgtgcgatttggggtgggaggaaggagggatggcctggcaatggcgtcgtcggttgtggacttgggaggaggagctgttagggg 102  Q
    ||||||||| ||| ||||||||||| || |||  ||| ||||| ||||| || |||||||||  | |||||||||| ||||||||||    
T  14852332 atatgtgcggtttagggtgggaggatggtggggcggcttggcagtggcgccgccggttgtgggttggggaggaggaactgttagggg 14852418  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 325
Target Start/End: Original strand, 39936879 - 39936946
Alignment:
Q  258 atttggcacaaacaggttctcttgaaggtttctatttttgcttgaggacttcttcggagtaggttgcc 325  Q
    |||||||| ||| |||| | | ||||||||||||||||||||||  |||||||||||| |||||||||    
T  39936879 atttggcataaataggtacccctgaaggtttctatttttgcttggagacttcttcggaataggttgcc 39936946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 151
Target Start/End: Complemental strand, 48805342 - 48805243
Alignment:
Q  54 tggcaatggcgtcgtcggttgtggacttgggaggaggagctgttagggg--tgtaggattttacttcacgatatttctttgcagcataattctacatata 151  Q
    ||||||||||| || | ||||||| ||||| ||||| || |||||||||  |||||||||||| |    || |||||||||||||| |||||||||||||    
T  48805342 tggcaatggcgccggcagttgtgggcttggaaggagaagttgttaggggagtgtaggattttattatttgacatttctttgcagcaaaattctacatata 48805243  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 8487029 - 8487066
Alignment:
Q  261 tggcacaaacaggttctcttgaaggtttctatttttgc 298  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  8487029 tggcacaaacaggttcccttgaaggtttctgtttttgc 8487066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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