View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10328_low_5 (Length: 412)

Name: NF10328_low_5
Description: NF10328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10328_low_5
NF10328_low_5
[»] chr5 (16 HSPs)
chr5 (1-396)||(8547674-8548069)
chr5 (77-396)||(1599940-1600258)
chr5 (77-396)||(8535647-8535967)
chr5 (77-396)||(8529089-8529403)
chr5 (150-260)||(8644488-8644598)
chr5 (80-396)||(9074369-9074683)
chr5 (150-260)||(8637143-8637253)
chr5 (79-184)||(2874139-2874248)
chr5 (77-285)||(8641634-8641846)
chr5 (79-184)||(2856529-2856638)
chr5 (77-135)||(2904643-2904705)
chr5 (210-260)||(2904783-2904833)
chr5 (206-260)||(8678090-8678144)
chr5 (316-352)||(2904878-2904914)
chr5 (77-134)||(8644623-8644684)
chr5 (319-355)||(9003647-9003683)
[»] chr6 (2 HSPs)
chr6 (74-259)||(16716647-16716836)
chr6 (311-396)||(16716492-16716577)
[»] scaffold0627 (2 HSPs)
scaffold0627 (74-259)||(4948-5135)
scaffold0627 (311-396)||(4793-4878)
[»] chr7 (2 HSPs)
chr7 (77-396)||(48361492-48361812)
chr7 (309-394)||(35779976-35780061)
[»] chr4 (1 HSPs)
chr4 (77-396)||(9443250-9443564)
[»] chr1 (1 HSPs)
chr1 (213-284)||(5131022-5131093)


Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 8547674 - 8548069
Alignment:
Q  1 gtgataaatatttggaagaaatatgctagacgtgcaatatgtgattatgcatgtgagattgagcgtgtggtaattgttgagatacacacactcggaacac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8547674 gtgataaatatttggaagaaatatgctagacgtgcaatatgtgattatgcatgtgagattgagcgtgtggtaattgttgagatacacacactcggaacac 8547773  T
Q  101 caacatggagaaataagtggatcctcaaatttcttcttcttatcttatgtatcccacttgtgtgaatcgtgcacttcattggatccgatttaaggaaagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8547774 caacatggagaaataagtggatcctcaaatttcttcttcttatcttatgtatcccacttgtgtgaatcgtgcacttcattggatccgatttaaggaaagg 8547873  T
Q  201 ggagggtctatattgtgtttttgttttgaaagagagaggtttcaatcatttccttctccttcatctgtgtttgaaaatcataataccgaagttcgtggtg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8547874 ggagggtctatattgtgtttttgttttgaaagagagaggtttcaatcatttccttctccttcatctgtgtttgaaaatcataataccgaagttcgtggtg 8547973  T
Q  301 cgagaagacgtattagcttgggagaattaaagggatgtctttacatttgtgactcgaactgtttctcttatgttacaatgtgggttatgaatgaat 396  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||| ||||    
T  8547974 tgagaagacgtattagcttgggagaattaaagggatgtctttacatttgtgactggaactatctctcttatgttacaatgtgggttatgaacgaat 8548069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 77 - 396
Target Start/End: Original strand, 1599940 - 1600258
Alignment:
Q  77 ttgagatacacacactcggaacaccaacatggagaaat----aagtggatcctcaaatttcttcttcttatcttatgtatcccacttgtgtgaatcgtgc 172  Q
    |||||||| ||||||| ||||||||| | |||||||||    ||||||||||||||||||||| ||     |||| | ||||||||||||||||| ||||    
T  1599940 ttgagataaacacacttggaacaccatcctggagaaatgttgaagtggatcctcaaatttctttttggatgcttaagaatcccacttgtgtgaatggtgc 1600039  T
Q  173 acttcattggatccgatttaaggaaaggggagggtctatattgtgtttttgttttgaaagagagaggtttcaatcatttccttctccttcatctgtgttt 272  Q
    ||||||||||||  ||| | |||    |  |  ||| ||||||  ||| ||||||||||| |||||||| || ||||||||||||||| ||  || ||||    
T  1600040 acttcattggataagatatgagggtgagcaaatgtcaatattggttttctgttttgaaagtgagaggttgcagtcatttccttctcctccacatgagttt 1600139  T
Q  273 gaaaatcataataccgaagttcgtggtgcgagaagacgtattagcttgggagaattaaagggatgtctttacatttgtgactcgaactgtttctcttatg 372  Q
    | |||||||||||  | |  | |||||   |  || | | ||||| |||||||||||||||||| |||||||||||||||||  | || ||| ||| |||    
T  1600140 ggaaatcataataatggaacttgtggt---aacagccatgttagcatgggagaattaaagggatttctttacatttgtgact--acctttttatctgatg 1600234  T
Q  373 ttacaatgtgggttatgaatgaat 396  Q
    || |||||||||||||||| ||||    
T  1600235 ttccaatgtgggttatgaaggaat 1600258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 77 - 396
Target Start/End: Complemental strand, 8535967 - 8535647
Alignment:
Q  77 ttgagatacacacactcggaacaccaacatggagaaat----aagtggatcctcaaatttcttcttcttatcttatgtatcccacttgtgtgaatcgtgc 172  Q
    |||||||| ||||||| ||||| ||| | |||||||||    ||||||||||||||||||||| |||   ||| | ||||||||||||||||||| ||||    
T  8535967 ttgagataaacacacttggaaccccatcctggagaaatgttgaagtggatcctcaaatttctttttcgagtctaaagtatcccacttgtgtgaatggtgc 8535868  T
Q  173 acttcattggatccgatttaaggaaaggggagggtctatattgtgtttttgttttgaaagagagaggtttcaatcatttccttctccttcatctgtgttt 272  Q
    ||| |||||| |  ||||| | |    |  | |||| ||||||  ||| || |||||||| |||| | |  | ||||||||||||||| ||    |||||    
T  8535867 actacattggctaagatttgatggtctgcaaaggtcaatattgattttctgctttgaaagtgagacgctgaagtcatttccttctcctccacagatgttt 8535768  T
Q  273 gaaaatcataataccgaagttcgtggtgcgagaagacgtattagcttgggagaattaaagggatgtctttacatttgtgactcgaactgtttctcttatg 372  Q
    | |||||||||||  | | ||| | ||   |  |||| ||||||| |||||||||||||||||| ||||||||||||||| |||| || ||| ||| |||    
T  8535767 ggaaatcataataatggatttcttagt---aatagacatattagcatgggagaattaaagggatttctttacatttgtgattcgacctttttatctgatg 8535671  T
Q  373 ttacaatgtgggttatgaatgaat 396  Q
    || |||||||||||||||||||||    
T  8535670 tttcaatgtgggttatgaatgaat 8535647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 77 - 396
Target Start/End: Complemental strand, 8529403 - 8529089
Alignment:
Q  77 ttgagatacacacactcggaacaccaacatggagaaat----aagtggatcctcaaatttcttcttcttatcttatgtatcccacttgtgtgaatcgtgc 172  Q
    |||||||| ||||||| |||||| || | |||||||||    ||||||||||||||||||||| |||   ||| | ||||||||||||||||||| ||||    
T  8529403 ttgagataaacacacttggaacaacatcctggagaaatgttgaagtggatcctcaaatttctttttcgagtctaaagtatcccacttgtgtgaatggtgc 8529304  T
Q  173 acttcattggatccgatttaaggaaaggggagggtctatattgtgtttttgttttgaaagagagaggtttcaatcatttccttctccttcatctgtgttt 272  Q
    ||||||||||||  ||||| |||    |  | |||| ||||||  ||| || |||||||  |||||||| || || |||||||||||| ||  |||||||    
T  8529303 acttcattggataagatttgagggtcagcaaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcgtttccttctcctccacatgtgttt 8529204  T
Q  273 gaaaatcataataccgaagttcgtggtgcgagaagacgtattagcttgggagaattaaagggatgtctttacatttgtgactcgaactgtttctcttatg 372  Q
    | ||||||||||      |||  | ||    | || | ||||||| |||||||||||||||||| ||| |||||||||||  ||| || | | ||| |||    
T  8529203 ggaaatcataat------gttttttgt---tgtaggcctattagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatg 8529113  T
Q  373 ttacaatgtgggttatgaatgaat 396  Q
    || |||||||||||||||||||||    
T  8529112 tttcaatgtgggttatgaatgaat 8529089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 150 - 260
Target Start/End: Complemental strand, 8644598 - 8644488
Alignment:
Q  150 tatcccacttgtgtgaatcgtgcacttcattggatccgatttaaggaaaggggagggtctatattgtgtttttgttttgaaagagagaggtttcaatcat 249  Q
    |||||||||| ||| ||| |||| |||||||||||| ||||| ||||    | | |||||||||||||||| ||||||||||| |||||||| |||||||    
T  8644598 tatcccacttatgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgttttgaaagtgagaggttgcaatcat 8644499  T
Q  250 ttccttctcct 260  Q
    |||||||||||    
T  8644498 ttccttctcct 8644488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 80 - 396
Target Start/End: Original strand, 9074369 - 9074683
Alignment:
Q  80 agatacacacactcggaacaccaacatggagaaat----aagtggatcctcaaatttcttcttcttatcttatgtatcccacttgtgtgaatcgtgcact 175  Q
    ||||| ||||||| |||||| ||| || |||||||    ||||||||||||||||||||| ||    |||   ||||||||||||||||||| |||||||    
T  9074369 agataaacacacttggaacaacaatattgagaaatgttgaagtggatcctcaaatttcttttttgagtctcgagtatcccacttgtgtgaatggtgcact 9074468  T
Q  176 tcattggatccgatttaaggaaaggggagggtctatattgtgtttttgttttgaaagagagaggtttcaatcatttccttctccttcatctgtgtttgaa 275  Q
    |||||||||  ||| | |  |   |  | |||| ||||||| ||| ||||||||||| |||||||| || ||||||||||||||| |   |||||||| |    
T  9074469 tcattggataagatatgaaaatcagcaaaggtcaatattgtttttctgttttgaaagtgagaggttgcagtcatttccttctcctccgcatgtgtttgga 9074568  T
Q  276 aatcataataccgaagttcgtggtgcgagaagacgtattagcttgggagaattaaagggatgtctttacatttgtgactcgaactgtttctcttatgtta 375  Q
    || |||||||  | | ||  || |   |  |||| ||| |   |||||||||||||||||| ||||||||||||||||| ||  | ||| ||| |||||     
T  9074569 aaccataatagtggaattgttgat---aacagacatatca---tgggagaattaaagggatttctttacatttgtgactggacatttttatctgatgttt 9074662  T
Q  376 caatgtgggttatgaatgaat 396  Q
    || ||||||||||||||||||    
T  9074663 cagtgtgggttatgaatgaat 9074683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 150 - 260
Target Start/End: Complemental strand, 8637253 - 8637143
Alignment:
Q  150 tatcccacttgtgtgaatcgtgcacttcattggatccgatttaaggaaaggggagggtctatattgtgtttttgttttgaaagagagaggtttcaatcat 249  Q
    |||||||||||||||||| || |  ||||||||||| |||||||||     | | |||||||||||||||| ||||| ||||  |||||||| |||||||    
T  8637253 tatcccacttgtgtgaatggtacgattcattggatcagatttaagggtcaagaaaggtctatattgtgtttctgtttagaaaatgagaggttgcaatcat 8637154  T
Q  250 ttccttctcct 260  Q
    |||||||||||    
T  8637153 ttccttctcct 8637143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 79 - 184
Target Start/End: Original strand, 2874139 - 2874248
Alignment:
Q  79 gagatacacacactcggaacaccaacatggagaaat----aagtggatcctcaaatttcttcttcttatcttatgtatcccacttgtgtgaatcgtgcac 174  Q
    ||||||||||| |||||||||||| |||||||||||    ||||||||||||||||||||| ||   | ||| || |||| || ||||||||| | ||||    
T  2874139 gagatacacacgctcggaacaccatcatggagaaatgttgaagtggatcctcaaatttcttttttgaagcttttgaatccaacatgtgtgaatggcgcac 2874238  T
Q  175 ttcattggat 184  Q
    ||||||||||    
T  2874239 ttcattggat 2874248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 285
Target Start/End: Complemental strand, 8641846 - 8641634
Alignment:
Q  77 ttgagatacacacactcggaacaccaacatggagaaat----aagtggatcctcaaatttcttcttcttatcttatgtatcccacttgtgtgaatcgtgc 172  Q
    |||||||| ||||||| ||| ||||| |||||||||||    ||||||||||||| ||||||  |||   ||||| ||||||||||||||||||| |||     
T  8641846 ttgagataaacacacttggagcaccatcatggagaaatgttgaagtggatcctcagatttctatttcgagtcttaagtatcccacttgtgtgaatagtgt 8641747  T
Q  173 acttcattggatccgatttaaggaaaggggagggtctatattgtgtttttgttttgaaagagagaggtttcaatcatttccttctccttcatctgtgttt 272  Q
     |||||||| |||  |||| |||    |  | |||| ||||| ||||| ||||| ||||| ||||| ||  | | ||||||||||||| ||  |||||||    
T  8641746 tcttcattgaatcaaatttgagggggagcaaaggtcaatattatgtttctgtttggaaagtgagagattgaagttatttccttctcctccacatgtgttt 8641647  T
Q  273 gaaaatcataata 285  Q
    | |||||||||||    
T  8641646 ggaaatcataata 8641634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 184
Target Start/End: Original strand, 2856529 - 2856638
Alignment:
Q  79 gagatacacacactcggaacaccaacatggagaaat----aagtggatcctcaaatttcttcttcttatcttatgtatcccacttgtgtgaatcgtgcac 174  Q
    ||||||||||| ||||||||| || |||||||||||    ||||||||||||||||||||| ||   | ||| || |||| || ||||||||| | ||||    
T  2856529 gagatacacacgctcggaacatcatcatggagaaatgttgaagtggatcctcaaatttcttttttgaagcttttgaatccaacatgtgtgaatggcgcac 2856628  T
Q  175 ttcattggat 184  Q
    ||||||||||    
T  2856629 ttcattggat 2856638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 2904643 - 2904705
Alignment:
Q  77 ttgagatacacacactcggaacaccaacatggagaaat----aagtggatcctcaaatttctt 135  Q
    ||||||||||||| ||||||||| || |||||||||||    |||||||||||||||||||||    
T  2904643 ttgagatacacacgctcggaacaacatcatggagaaatcttgaagtggatcctcaaatttctt 2904705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 2904783 - 2904833
Alignment:
Q  210 atattgtgtttttgttttgaaagagagaggtttcaatcatttccttctcct 260  Q
    |||||||||||  |||||||||| |||||| | ||||||||||||||||||    
T  2904783 atattgtgtttcagttttgaaagtgagaggatgcaatcatttccttctcct 2904833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 8678144 - 8678090
Alignment:
Q  206 gtctatattgtgtttttgttttgaaagagagaggtttcaatcatttccttctcct 260  Q
    ||||||||||||||| ||||| ||||  |||| ||| ||||||||||||||||||    
T  8678144 gtctatattgtgtttctgtttagaaactgagaagttgcaatcatttccttctcct 8678090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 2904878 - 2904914
Alignment:
Q  316 gcttgggagaattaaagggatgtctttacatttgtga 352  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  2904878 gcttgggagaattgaagggatttctttacatttgtga 2904914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 8644684 - 8644623
Alignment:
Q  77 ttgagatacacacactcggaacaccaacatggagaaat----aagtggatcctcaaatttct 134  Q
    |||||||| ||||||| ||||||||| |||||||||||    |||| |||||||||||||||    
T  8644684 ttgagataaacacacttggaacaccatcatggagaaatgctgaagtagatcctcaaatttct 8644623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 355
Target Start/End: Complemental strand, 9003683 - 9003647
Alignment:
Q  319 tgggagaattaaagggatgtctttacatttgtgactc 355  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  9003683 tgggagaattaaggggatttctttacatttgtgactc 9003647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 74 - 259
Target Start/End: Complemental strand, 16716836 - 16716647
Alignment:
Q  74 ttgttgagatacacacactcggaacaccaacatggagaaataa----gtggatcctcaaatttcttcttcttatcttatgtatcccacttgtgtgaatcg 169  Q
    ||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||| | ||| | ||||||| ||||||||||||||||| |    
T  16716836 ttgttgagatacacacactcggaacaccaacatggagaaatatcaatgtggatcctcaaatttcattttcatgtcttatgaatcccacttgtgtgaatgg 16716737  T
Q  170 tgcacttcattggatccgatttaaggaaaggggagggtctatattgtgtttttgttttgaaagagagaggtttcaatcatttccttctcc 259  Q
    ||||||||||||| ||  |||| ||| ||||| |  ||||||||||||||||||||||||||| |||| ||| || ||||||||||||||    
T  16716736 tgcacttcattggttcacatttgagggaagggaaatgtctatattgtgtttttgttttgaaagtgagaagttgcattcatttccttctcc 16716647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 311 - 396
Target Start/End: Complemental strand, 16716577 - 16716492
Alignment:
Q  311 tattagcttgggagaattaaagggatgtctttacatttgtgactcgaactgtttctcttatgttacaatgtgggttatgaatgaat 396  Q
    ||||||| |||||||||||||||||| ||| ||||||| |||||| ||||  |||   ||||||||||||||||||||||||||||    
T  16716577 tattagcatgggagaattaaagggatttctatacatttctgactcaaacttcttcgaatatgttacaatgtgggttatgaatgaat 16716492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 74 - 259
Target Start/End: Complemental strand, 5135 - 4948
Alignment:
Q  74 ttgttgagatacacacactcggaacaccaacatggagaaataa----gtggatcctcaaatttcttcttcttatcttatgtatcccacttgtgtgaatcg 169  Q
    |||| ||||||||||||||||||||| |||||||||||||||     ||||||||||||||||| | ||| | ||||||| ||||||||||||||||| |    
T  5135 ttgtcgagatacacacactcggaacatcaacatggagaaatatcaatgtggatcctcaaatttcattttcatgtcttatgaatcccacttgtgtgaatgg 5036  T
Q  170 tgcacttcattggatccgatttaaggaaaggggagggtctatattgtgtttttgttttgaaagagagaggtttcaatcatttccttctcc 259  Q
    |||||||||||||||| ||||| ||| || || |  |||  ||||||||||||||||||| || |||||||| ||||||||||| |||||    
T  5035 tgcacttcattggatcagatttgagggaaaggaaacgtc--tattgtgtttttgttttgacagtgagaggttgcaatcatttccctctcc 4948  T

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Target: scaffold0627; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 311 - 396
Target Start/End: Complemental strand, 4878 - 4793
Alignment:
Q  311 tattagcttgggagaattaaagggatgtctttacatttgtgactcgaactgtttctcttatgttacaatgtgggttatgaatgaat 396  Q
    ||||||| |||||||||||||||||| |||||||||||||||||| ||||  ||    ||||||||||||||||||||||||||||    
T  4878 tattagcatgggagaattaaagggatttctttacatttgtgactcaaactccttaaaatatgttacaatgtgggttatgaatgaat 4793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 77 - 396
Target Start/End: Original strand, 48361492 - 48361812
Alignment:
Q  77 ttgagatacacacactcggaacaccaacatggagaaat----aagtggatcctcaaatttcttcttcttatcttatgtatcccacttgtgtgaatcgtgc 172  Q
    |||||||| ||||||| ||||||||| | ||||| |||    ||||||||||||| ||||||| |||   |||   ||||||||||||||||||| ||||    
T  48361492 ttgagataaacacacttggaacaccatcctggaggaatgttgaagtggatcctcacatttctttttcgagtctcgagtatcccacttgtgtgaatggtgc 48361591  T
Q  173 acttcattggatccgatttaaggaaaggggagggtctatattgtgtttttgttttgaaagagagaggtttcaatcatttccttctccttcatctgtgttt 272  Q
    ||||||||||||  ||||| |||    |  | |||| ||||||| ||| ||||||||||| |||||| | || ||||||||||||||| ||  |||||||    
T  48361592 acttcattggataagatttgagggtcagcaaaggtcaatattgtttttctgttttgaaagtgagagggtgcagtcatttccttctcctccacatgtgttt 48361691  T
Q  273 gaaaatcataataccgaagttcgtggtgcgagaagacgtattagcttgggagaattaaagggatgtctttacatttgtgactcgaactgtttctcttatg 372  Q
    | |||||||||||  | | ||| ||||   |  || | ||||||| |||||||||||||||||| |||||||||||||||||||| || |   ||| |||    
T  48361692 ggaaatcataataatggaattcttggt---aacaggcatattagcatgggagaattaaagggatttctttacatttgtgactcgacctttgcatctgatg 48361788  T
Q  373 ttacaatgtgggttatgaatgaat 396  Q
    || |||||||||||||||||||||    
T  48361789 tttcaatgtgggttatgaatgaat 48361812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 309 - 394
Target Start/End: Complemental strand, 35780061 - 35779976
Alignment:
Q  309 cgtattagcttgggagaattaaagggatgtctttacatttgtgactcgaactgtttctcttatgttacaatgtgggttatgaatga 394  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||| ||| | |||   | |||||||||||||||||||||||||    
T  35780061 cgtattagcatgggagaattaaagggatttctttacatttgtgacttgaatttttttgttgatgttacaatgtgggttatgaatga 35779976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 77 - 396
Target Start/End: Complemental strand, 9443564 - 9443250
Alignment:
Q  77 ttgagatacacacactcggaacaccaacatggagaaat----aagtggatcctcaaatttcttcttcttatcttatgtatcccacttgtgtgaatcgtgc 172  Q
    |||||||| ||||||| |||||| || | |||||||||    ||||||||||||||||||||| |||   ||| | ||||||||||||||||||| ||||    
T  9443564 ttgagataaacacacttggaacaacatcctggagaaatgttgaagtggatcctcaaatttctttttcgagtctaaagtatcccacttgtgtgaatggtgc 9443465  T
Q  173 acttcattggatccgatttaaggaaaggggagggtctatattgtgtttttgttttgaaagagagaggtttcaatcatttccttctccttcatctgtgttt 272  Q
    ||||||||||||  ||||| ||||   |  | |||| ||||||  ||| || |||||||| |||||||| || ||||||||||||||| ||  |||||||    
T  9443464 acttcattggataagatttgaggatgagcaaaggtcaatattggttttctgctttgaaagtgagaggttgcagtcatttccttctcctccacatgtgttt 9443365  T
Q  273 gaaaatcataataccgaagttcgtggtgcgagaagacgtattagcttgggagaattaaagggatgtctttacatttgtgactcgaactgtttctcttatg 372  Q
    | ||||||||||      |||  | ||   || || | ||||||| |||||||||||||||||| ||| |||||||||||  ||| || | | ||| |||    
T  9443364 ggaaatcataat------gtttattgt---agtaggcctattagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatg 9443274  T
Q  373 ttacaatgtgggttatgaatgaat 396  Q
    || |||||||||||||||||||||    
T  9443273 tttcaatgtgggttatgaatgaat 9443250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 5131093 - 5131022
Alignment:
Q  213 ttgtgtttttgttttgaaagagagaggtttcaatcatttccttctccttcatctgtgtttgaaaatcataat 284  Q
    ||||||||  |||||||||| ||||| || |||||||| ||||||||| ||   ||||||||||||||||||    
T  5131093 ttgtgtttcagttttgaaagtgagagattgcaatcattcccttctcctccacacgtgtttgaaaatcataat 5131022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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