View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10328_low_7 (Length: 261)
Name: NF10328_low_7
Description: NF10328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10328_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 31875783 - 31875536
Alignment:
| Q |
1 |
tatagtttgtgtgctgcaattaatatggcaggtgtacaaatattttgaaggttactgataaaaaacctaaacctatctcaaaagggattcttgggcttgg |
100 |
Q |
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| T |
31875783 |
tatagtttgtgtgctgcaattaatatggcaggtgtacaaatattttgaaggttactgataaaaaacctaaacctatctcaaaagggattcttgggcttgg |
31875684 |
T |
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| Q |
101 |
gcatggtgagaccagcatattgtcccagcttaaatctaaaggcttgattaaaaatgtggtaggtcattgttttagtgggaaagaaggacaaggagggtaa |
200 |
Q |
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| T |
31875683 |
gcatggtgagaccagcatattgtcccagcttaaatctaaaggcttgattaaaaatgtggtaggtcattgttttagtgggaaagaaggacaaggagggtaa |
31875584 |
T |
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| Q |
201 |
taacttcattcccaaattaaacctccttcagagattacttggatgcct |
248 |
Q |
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| T |
31875583 |
taacttcattcccaaattaaacctccttcagagattacttggatgcct |
31875536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 82 - 169
Target Start/End: Original strand, 886644 - 886731
Alignment:
| Q |
82 |
aagggattcttgggcttgggcatggtgagaccagcatattgtcccagcttaaatctaaaggcttgattaaaaatgtggtaggtcattg |
169 |
Q |
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| T |
886644 |
aagggatccttgggcttgggtatggtaaggccagcatattgtcccagcttaaatctcaaggtttgattcaaaatgtggtaggtcattg |
886731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 31935838 - 31935796
Alignment:
| Q |
100 |
ggcatggtgagaccagcatattgtcccagcttaaatctaaagg |
142 |
Q |
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| T |
31935838 |
ggcacggtgaggccagcatattgtcccagcttaaatctaaagg |
31935796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 142
Target Start/End: Original strand, 31660514 - 31660556
Alignment:
| Q |
100 |
ggcatggtgagaccagcatattgtcccagcttaaatctaaagg |
142 |
Q |
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| T |
31660514 |
ggcacggtgaggccaacatattgtcccagcttaaatctaaagg |
31660556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 31974075 - 31974033
Alignment:
| Q |
100 |
ggcatggtgagaccagcatattgtcccagcttaaatctaaagg |
142 |
Q |
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| T |
31974075 |
ggcacggtgagagcaacatattgtcccagcttaaatctaaagg |
31974033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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