View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10328_low_9 (Length: 241)
Name: NF10328_low_9
Description: NF10328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10328_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 31875795 - 31876017
Alignment:
| Q |
1 |
aaatatttcctccattctaaatataacacacatttggattaatgtatctggtccaaacttttgttgactaataatgtcttttatgtttaggaccagagcg |
100 |
Q |
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| T |
31875795 |
aaatatttcctccattctaaatataacacacatttggattaatgtatctggtccaaacttttgttgactaattatgtcttttatgtttaggaccagagcg |
31875894 |
T |
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| Q |
101 |
agtagttaacacaaatctaaccaattaatcttaggtgactcacccgaatgccagcttaggacgctgtaaagtgcgatcagagctttctaagggaatgttg |
200 |
Q |
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| T |
31875895 |
agtagttaacacaaatctaaccaattaatcttaggtgact--cccgaatgccagcttaggacgctgtaaagtgcgatcagagctttctaagggaatgttg |
31875992 |
T |
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| Q |
201 |
tcttgtactaggaaacccttagttt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
31875993 |
tcttgtactaggaaacccttagttt |
31876017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 225
Target Start/End: Original strand, 31974199 - 31974293
Alignment:
| Q |
135 |
gtgactcacccgaatgccagcttaggacgctgtaaagtgcgatcagagctttctaagggaat---gt-tgtcttgtactaggaaacccttagttt |
225 |
Q |
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|||| |||||||||||| | || ||| |||||||||||||||||||||||||| | |||||| || |||||| |||||||||||| ||||||| |
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| T |
31974199 |
gtgaatcacccgaatgcgacctcagggcgctgtaaagtgcgatcagagctttcaatgggaatactgtctgtcttttactaggaaacctttagttt |
31974293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 31935906 - 31935942
Alignment:
| Q |
167 |
taaagtgcgatcagagctttctaagggaatgttgtct |
203 |
Q |
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| T |
31935906 |
taaagtgcgatcagagctttctatgggaatattgtct |
31935942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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