View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10329_high_1 (Length: 707)

Name: NF10329_high_1
Description: NF10329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10329_high_1
NF10329_high_1
[»] chr1 (1 HSPs)
chr1 (14-688)||(6316375-6317051)


Alignment Details
Target: chr1 (Bit Score: 654; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 14 - 688
Target Start/End: Original strand, 6316375 - 6317051
Alignment:
Q  14 atggacatcacactcaaggcagaggcatgaaatcaacacataaatcacaattaaaatgatttatccaaccatattagttaaaaaatgagccaccgttttg 113  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6316375 atggacattacactcaaggcagaggcatgaaatcaacacataaatcacaattaaaatgatttatccaaccatattagttaaaaaatgagccaccgttttg 6316474  T
Q  114 tacatatcttgcaacataaggttgtttattaccgatggttttattagttatctacattcagatctctgctggaaactaaagattcaaagagtaagagtat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6316475 tacatatcttgcaacataaggttgtttattaccgatggttttattagttatctacattcagatctctgctggaaactaaagattcaaagagtaagagtat 6316574  T
Q  214 ggatatatctatcaatcatcacccaccaaatcaaacagagatatcatatcagactttataaataggaaactaaagatcaatgcaaatagagaaaaataac 313  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6316575 ggatatatctatcaatcatcacccaccaaatcaagcagagatatcatatcagactttataaataggaaactaaagatcaatgcaaatagagaaaaataac 6316674  T
Q  314 catattcactgccgaaaactatatcataacctcagtctgcatcatattgaaaccatattaaccccagacacgtatcgg--ttgtattgtgtcctggtcta 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||    
T  6316675 catattcactgccgaaaactatatcataacctcagtctgcatcatattgaaaccatattaaccccagacacgtatcggtattgtattgtgtcttggtcta 6316774  T
Q  412 ttttaatctaaaacatgaaagtagtaacggaattatataagtaagtgaaaaagaagttttggttcttagtgtagtcagttcaaaaactacgagaaaaacc 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6316775 ttttaatctaaaacatgaaagtagtaacggaattatataagtaagtgaaaaagaagttttggttcttagtgtagtcagttcaaaaactacgagaaaaacc 6316874  T
Q  512 atagtggccttcatttttatgaaatgctatatgtatcatattctatcatcattgaatagaagtcgaaataggtcaaaatcagaacacattggcaagataa 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6316875 atagtggccttcatttttatgaaatgctatatgtatcatattctatcatcattgaatagaagtcgaaataggtcaaaatcagaacacattggcaagataa 6316974  T
Q  612 agaaatggaaaaagtcagaacagcacctaacaacccttaacatctttgatgccttaaggcttcaaagttacgactat 688  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6316975 agaaatggaaaaagtcagaacagcacctaacaacccttaacatctttgatgccttaaggcttcaaagttacgactat 6317051  T

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