View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10329_high_3 (Length: 308)
Name: NF10329_high_3
Description: NF10329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10329_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 3005221 - 3004936
Alignment:
| Q |
18 |
caattttgattgcagtccctcgagacagccgtcgaagtgtgcaatagtgttttcaatcccctccaatttcatagtgcaattcaaggcttttcaacaaacg |
117 |
Q |
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| T |
3005221 |
caattttgattgcagtccctcgagacagccgtcgaagtgtgcagtagtgtttccaatcccctccaatttcatagtgcaattcaaggcttttcaacaaacg |
3005122 |
T |
|
| Q |
118 |
cataagtgcttttccatacatgtccctaacaaaaccaaagtcccatgcaacagttcctcccaaagctaaaaaaggaaaaccataggtagcaaaccgcaac |
217 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3005121 |
cataagtgcatttccatacatgtccctaacaaaaccaaagtcccatgcaacagtccctcccaaagctaaaaaaggaaaaccataggtagcaaaccgcagc |
3005022 |
T |
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| Q |
218 |
acatcaccactgccaacacagttgaaccacatcagtctgttgtctgaaaaccgcaccagtcacaaccttaaagctttcatctcact |
303 |
Q |
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| T |
3005021 |
acatcaccactgccaacacagttgaaccacatcagtctgttgtccgaaaaccgcaccagtcacaaccttaaagctttcgtctcact |
3004936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 62 - 303
Target Start/End: Complemental strand, 54655176 - 54654935
Alignment:
| Q |
62 |
tagtgttttcaatcccctccaatttcatagtgcaattcaaggcttttcaacaaacgcataagtgcttttccatacatgtccctaacaaaaccaaagtccc |
161 |
Q |
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| T |
54655176 |
tagtgtttccaatcccctccaatttcatagtgcaattcaaggcttttcaacaaacgcataagtgcatttccatacaggtccctaacaaaaccaaagtccc |
54655077 |
T |
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| Q |
162 |
atgcaacagttcctcccaaagctaaaaaaggaaaaccataggtagcaaaccgcaacacatcaccactgccaacacagttgaaccacatcagtctgttgtc |
261 |
Q |
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| T |
54655076 |
atacaacagtccctcccaaagctaaaaaaggaaaaccataggtagcaaaccgcagcacatcaccactgccaacacagttgaaccacaacagtctgctgtc |
54654977 |
T |
|
| Q |
262 |
tgaaaaccgcaccagtcacaaccttaaagctttcatctcact |
303 |
Q |
| |
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|||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
54654976 |
tgaaaaccgcactagtcacaaccttaaagctttcgtctcact |
54654935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 21 - 143
Target Start/End: Complemental strand, 7853036 - 7852914
Alignment:
| Q |
21 |
ttttgattgcagtccctcgagacagccgtcgaagtgtgcaatagtgttttcaatcccctccaatttcatagtgcaattcaaggcttttcaacaaacgcat |
120 |
Q |
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||||||||||||||||||||| ||||||||||||| |||| |||||||| ||| || |||||||||||||||||||||| ||||||||||| || |||| |
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| T |
7853036 |
ttttgattgcagtccctcgagtcagccgtcgaagtttgcagtagtgtttccaaccctttccaatttcatagtgcaattcagggcttttcaacgaatgcat |
7852937 |
T |
|
| Q |
121 |
aagtgcttttccatacatgtccc |
143 |
Q |
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||||| |||||||| ||||||| |
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| T |
7852936 |
tagtgcatttccatatatgtccc |
7852914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 143
Target Start/End: Original strand, 5563038 - 5563160
Alignment:
| Q |
21 |
ttttgattgcagtccctcgagacagccgtcgaagtgtgcaatagtgttttcaatcccctccaatttcatagtgcaattcaaggcttttcaacaaacgcat |
120 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||| |||||||| ||| || ||||||||||||||| |||| | ||||||||||| || |||| |
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| T |
5563038 |
ttttgaatgcagtccctcgagatagccgtcgaagtgtgcagtagtgtttccaaccctttccaatttcatagtgtaatttagggcttttcaacgaatgcat |
5563137 |
T |
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| Q |
121 |
aagtgcttttccatacatgtccc |
143 |
Q |
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||||| |||||||| ||||||| |
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| T |
5563138 |
tagtgcatttccatatatgtccc |
5563160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 4641683 - 4641809
Alignment:
| Q |
18 |
caattttgattgcagtccctcgagacagccgtcgaagtgtgcaatagtgttttcaatcccctccaatttcatagtgcaattcaaggc-ttttcaacaaac |
116 |
Q |
| |
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||||||||||||||| |||| ||||||| ||| ||||| |||| |||||||| ||||||||||||||||| |||| |||| | ||| ||||||| || |
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| T |
4641683 |
caattttgattgcagccccttgagacagtcgttgaagtttgcagtagtgtttccaatcccctccaatttcccagtgtaatttagggctttttcaatgaat |
4641782 |
T |
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| Q |
117 |
gcataagtgcttttccatacatgtccc |
143 |
Q |
| |
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|||| ||||| |||||||||||||||| |
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| T |
4641783 |
gcattagtgcatttccatacatgtccc |
4641809 |
T |
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