View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10329_high_5 (Length: 240)
Name: NF10329_high_5
Description: NF10329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10329_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 28862311 - 28862526
Alignment:
| Q |
4 |
gtaagaaatcactattgttgcgtcnnnnnnntcactatcataatccaccatgccatatgttgtgatnnnnnnnnnn---tcttattgataaaaatttaca |
100 |
Q |
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| T |
28862311 |
gtaagaaatcactattgttgcgtcaaaaag-tcactatcataatccaccataccatatgttgtgataaaaaaaaaaatatcttattgataaaaatttaca |
28862409 |
T |
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| Q |
101 |
acacaatgagtaaatacaacataaagttagtaccaaaaaacaagtacatcataaagtctcaaatacaaggtaaacaaaaaactcccatcaaattcaaatg |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
28862410 |
acacaatcagtaaatacaacataaagttagtaccaaaaagcaagtacatcataaagtctcaaatacaaggtaaacaaaaaacaccca------tcaaatg |
28862503 |
T |
|
| Q |
201 |
gacaaataaatacataatgtcca |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
28862504 |
gacaaataaatacataatgtcca |
28862526 |
T |
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