View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10329_low_2 (Length: 597)

Name: NF10329_low_2
Description: NF10329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10329_low_2
NF10329_low_2
[»] chr7 (26 HSPs)
chr7 (11-597)||(36217331-36217917)
chr7 (32-579)||(36221334-36221887)
chr7 (33-307)||(32727359-32727633)
chr7 (11-250)||(35981775-35982014)
chr7 (11-250)||(36003187-36003426)
chr7 (345-588)||(36225999-36226242)
chr7 (11-220)||(35977209-35977418)
chr7 (11-220)||(35998621-35998830)
chr7 (11-230)||(35946546-35946765)
chr7 (315-510)||(35939415-35939610)
chr7 (345-492)||(35982126-35982273)
chr7 (345-492)||(36003538-36003685)
chr7 (351-475)||(35977564-35977688)
chr7 (351-475)||(35998976-35999100)
chr7 (65-220)||(35957808-35957963)
chr7 (370-475)||(35946923-35947028)
chr7 (370-475)||(35958128-35958233)
chr7 (50-221)||(35939131-35939306)
chr7 (33-169)||(35952192-35952328)
chr7 (370-482)||(35955177-35955289)
chr7 (403-472)||(35965669-35965738)
chr7 (348-491)||(29602862-29603005)
chr7 (348-491)||(29750289-29750432)
chr7 (467-588)||(35973540-35973661)
chr7 (467-588)||(35994952-35995073)
chr7 (348-473)||(29743270-29743395)
[»] chr1 (4 HSPs)
chr1 (12-208)||(18125475-18125671)
chr1 (45-250)||(18117855-18118060)
chr1 (348-568)||(18125814-18126034)
chr1 (372-453)||(18118194-18118275)
[»] chr2 (1 HSPs)
chr2 (12-207)||(26328754-26328949)
[»] chr4 (2 HSPs)
chr4 (348-473)||(49340545-49340670)
chr4 (348-457)||(49351925-49352034)
[»] chr5 (1 HSPs)
chr5 (349-473)||(32784242-32784366)


Alignment Details
Target: chr7 (Bit Score: 587; Significance: 0; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 11 - 597
Target Start/End: Complemental strand, 36217917 - 36217331
Alignment:
Q  11 cagagacaaacaatcctctaacgaaagaccttccaaaacatacgaaggaacagtacccatcatggaagcaactgagttgctacgtgtggtcactataatt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36217917 cagagacaaacaatcctctaacgaaagaccttccaaaacatacgaaggaacagtacccatcatggaagcaactgagttgctacgtgtggtcactataatt 36217818  T
Q  111 ttacttcctactgcaccaactttgatcaaatcttccaactcaatccattttgcacgatcatcattccatacatcatctagcacgaggataaacttttggc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36217817 ttacttcctactgcaccaactttgatcaaatcttccaactcaatccattttgcacgatcatcattccatacatcatctagcacgaggataaacttttggc 36217718  T
Q  211 cagatagtttacgtcttagatgaatttgtagttgctcaatgtcacagtggttactatcttcttggggagcaataggaacacttggtgcagctgaagcaaa 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36217717 cagatagtttacgtcttagatgaatttgtagttgctcaatgtcacagtggttactatcttcttggggagcaataggaacacttggtgcagctgaagcaaa 36217618  T
Q  311 aacggagttgataattttgataacgatctgtcttatatcaaaatcaacagagacacatgcccacatcttcaattgaaaaacttcatctatcctcttatca 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36217617 aacggagttgataattttgataacgatctgtcttatatcaaaatcaacagagacacatgcccacatcttcaattgaaaaacttcatctatcctcttatca 36217518  T
Q  411 ttgtacaccaattttgcaagtgtggtcttccccaatcctccaattcccactatgggaataacacataaacttctatgaccatttccataaccttgaggat 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36217517 ttgtacaccaattttgcaagtgtggtcttccccaatcctccaattcccactatgggaataacacataaacttctatgaccatttccataaccttgaggat 36217418  T
Q  511 cggaatccatcaaaagctcgataattgcttccttgtcattctcccttcctataacacttgaaacatcaatatgggaataggtgattt 597  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36217417 cggaatccatcaaaagctcgataattgcttccttgtcattctcccttcctataacacttgaaacatcaatatgggaataggtgattt 36217331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 32 - 579
Target Start/End: Complemental strand, 36221887 - 36221334
Alignment:
Q  32 cgaaagaccttccaaaacatacgaaggaacagtacccatcatggaagcaactgagttgctacgtgtggtcactataattttacttcctactgcaccaact 131  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||| |||| ||| |||||||| | ||||||| || || ||||||||    
T  36221887 cgaaagaccttccaaaatatacgaaggaacagtactcatcatggaagcaattgagttactacatgtcgtcactatgactttactttcttctccaccaact 36221788  T
Q  132 ttgatcaaatcttccaactcaatccattttgcacgatcatcattccatacatcatctagcacgaggataaacttttggccagatagtttacgtcttagat 231  Q
    |||||||||| |  ||||||||||||||||||||| ||||||||||||| ||||||||| | ||||||||||||||| ||||| |||||| ||||||||     
T  36221787 ttgatcaaatttaacaactcaatccattttgcacggtcatcattccatatatcatctaggatgaggataaacttttgaccagaaagtttatgtcttagac 36221688  T
Q  232 gaatttgtagttgctcaatgtcacagtggttactatcttcttggggagcaataggaacacttggtgca------gctgaagcaaaaacggagttgataat 325  Q
    ||||||||||||||||||| ||| | |||||| | |||||||||  ||| |||| ||||||||||| |      |||||||||||| | |||||||||||    
T  36221687 gaatttgtagttgctcaatatcaaaatggttaatgtcttcttggttagccatagcaacacttggtggagttgatgctgaagcaaaagcagagttgataat 36221588  T
Q  326 tttgataacgatctgtcttatatcaaaatcaacagagacacatgcccacatcttcaattgaaaaacttcatctatcctcttatcattgtacaccaatttt 425  Q
    ||||||||  ||  | || ||||||||||||   ||||||||  |||| ||||||||||| ||||  ||||||||||||||||||||| |||||||  ||    
T  36221587 tttgataataatgcgcctaatatcaaaatcattggagacacacacccaaatcttcaattggaaaatatcatctatcctcttatcattgaacaccaacctt 36221488  T
Q  426 gcaagtgtggtcttccccaatcctccaattcccactatgggaataacacataaacttctatgaccatttccataaccttgaggatcggaatccatcaaaa 525  Q
    |||||||||||||||||||| || |||||||| ||||||||||||||||| ||| || | | ||||| |||||  || |||||||  |  | ||||||||    
T  36221487 gcaagtgtggtcttccccaagccaccaattccaactatgggaataacacacaaatttttgtcaccatctccatctccatgaggatgcggttgcatcaaaa 36221388  T
Q  526 gctcgataattgcttccttgtcattctcccttcctataacacttgaaacatcaa 579  Q
    | | ||||||| ||||| ||||||||||||| || |||||||||||| ||||||    
T  36221387 gtttgataatttcttccctgtcattctccctcccaataacacttgaagcatcaa 36221334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 33 - 307
Target Start/End: Original strand, 32727359 - 32727633
Alignment:
Q  33 gaaagaccttccaaaacatacgaaggaacagtacccatcatggaagcaactgagttgctacgtgtggtcactataattttacttcctactgcaccaactt 132  Q
    ||||||||||||||||| ||||| |||| |||||||||||| ||||||| ||||||||||||||| |||||||| ||||| |||||| ||||||| ||||    
T  32727359 gaaagaccttccaaaacgtacgagggaatagtacccatcattgaagcaaatgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgactt 32727458  T
Q  133 tgatcaaatcttccaactcaatccattttgcacgatcatcattccatacatcatctagcacgaggataaacttttggccagatagtttacgtcttagatg 232  Q
    | |||||||||  ||||||||||||||||||||||||||||||||||| ||| ||||| || || | |||||| || ||||  |||||| |||||  | |    
T  32727459 ttatcaaatctatcaactcaatccattttgcacgatcatcattccatatatcgtctaggacaagcaaaaacttctgaccagcaagtttatgtctttaacg 32727558  T
Q  233 aatttgtagttgctcaatgtcacagtggttactatcttcttggggagcaataggaacacttggtgcagctgaagc 307  Q
    | ||||||| |||||||| ||| ||| |||  | | ||||||| |||||| || ||||||||||| | |||||||    
T  32727559 actttgtagctgctcaatatcaaagttgttgatgttttcttggtgagcaagagaaacacttggtggaactgaagc 32727633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 35981775 - 35982014
Alignment:
Q  11 cagagacaaacaatcctctaacgaaagaccttccaaaacatacgaaggaacagtacccatcatggaagcaactgagttgctacgtgtggtcactataatt 110  Q
    |||||| |||||||||| |   |||||||||| ||||| ||||| |||||||  ||||||||| |||| || |||||| |||||||| ||||| | ||||    
T  35981775 cagagataaacaatcctttggagaaagacctttcaaaagatacggaggaacatcacccatcatcgaagaaattgagttactacgtgtagtcaccaaaatt 35981874  T
Q  111 ttacttcctactgcaccaactttgatcaaatcttccaactcaatccattttgcacgatcatcattccatacatcatctagcacgaggataaacttttggc 210  Q
    || |||||  |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||| | ||| || | ||||||||| |    
T  35981875 ttgcttccagctgcgccaactttgatcaaatctttcaactcaatccattttgcacgatcatcattccgcacatcatccaacacaagtaaaaacttttgtc 35981974  T
Q  211 cagatagtttacgtcttagatgaatttgtagttgctcaat 250  Q
      || |||||| |||||||| || ||||||||||||||||    
T  35981975 tggaaagtttatgtcttagacgagtttgtagttgctcaat 35982014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 36003187 - 36003426
Alignment:
Q  11 cagagacaaacaatcctctaacgaaagaccttccaaaacatacgaaggaacagtacccatcatggaagcaactgagttgctacgtgtggtcactataatt 110  Q
    |||||| |||||||||| |   |||||||||| ||||| ||||| |||||||  ||||||||| |||| || |||||| |||||||| ||||| | ||||    
T  36003187 cagagataaacaatcctttggagaaagacctttcaaaagatacggaggaacatcacccatcatcgaagaaattgagttactacgtgtagtcaccaaaatt 36003286  T
Q  111 ttacttcctactgcaccaactttgatcaaatcttccaactcaatccattttgcacgatcatcattccatacatcatctagcacgaggataaacttttggc 210  Q
    || |||||  |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||| | ||| || | ||||||||| |    
T  36003287 ttgcttccagctgcgccaactttgatcaaatctttcaactcaatccattttgcacgatcatcattccgcacatcatccaacacaagtaaaaacttttgtc 36003386  T
Q  211 cagatagtttacgtcttagatgaatttgtagttgctcaat 250  Q
      || |||||| |||||||| || ||||||||||||||||    
T  36003387 tggaaagtttatgtcttagacgagtttgtagttgctcaat 36003426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 345 - 588
Target Start/End: Original strand, 36225999 - 36226242
Alignment:
Q  345 atatcaaaatcaacagagacacatgcccacatcttcaattgaaaaacttcatctatcctcttatcattgtacaccaattttgcaagtgtggtcttcccca 444  Q
    |||||||||||| |||||| |||  |||||||||||||||| ||||  ||||| | ||||||||| ||| ||||||||||||||||||||||||||||||    
T  36225999 atatcaaaatcatcagagatacacacccacatcttcaattggaaaagatcatcaaccctcttatcgttgaacaccaattttgcaagtgtggtcttcccca 36226098  T
Q  445 atcctccaattcccactatgggaataacacataaacttctatgaccatttccataaccttgaggatcggaatccatcaaaagctcgataattgcttcctt 544  Q
    | || |||||||||||||||||||||||||| |||||| ||| |||||   ||| |||||||||||  |  | ||||||||||| ||||||  | | | |    
T  36226099 agccaccaattcccactatgggaataacacacaaacttttatcaccatcagcatcaccttgaggatgtggctgcatcaaaagcttgataatatcattcct 36226198  T
Q  545 gtcattctcccttcctataacacttgaaacatcaatatgggaat 588  Q
     ||||||||||||||||| |||  |||| ||||||  |||||||    
T  36226199 ctcattctcccttcctatcacatctgaagcatcaacgtgggaat 36226242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 35977209 - 35977418
Alignment:
Q  11 cagagacaaacaatcctctaacgaaagaccttccaaaacatacgaaggaacagtacccatcatggaagcaactgagttgctacgtgtggtcactataatt 110  Q
    |||||| |||||||||| |   |||||||||| ||||| ||| | |||||||  ||||||||| ||||||| |||||| |||||||| ||||| ||||||    
T  35977209 cagagataaacaatcctttggagaaagacctttcaaaagatatggaggaacatcacccatcatcgaagcaattgagttactacgtgttgtcacgataatt 35977308  T
Q  111 ttacttcctactgcaccaactttgatcaaatcttccaactcaatccattttgcacgatcatcattccatacatcatctagcacgaggataaacttttggc 210  Q
    || ||||||  |||||||||||| |||||||||| ||| |||| ||| ||||||||||||||||||||||| ||||||| |||||  | ||||||||| |    
T  35977309 ttgcttcctggtgcaccaacttttatcaaatctttcaattcaagccactttgcacgatcatcattccatacgtcatctaacacgactaaaaacttttgac 35977408  T
Q  211 cagatagttt 220  Q
    |||| |||||    
T  35977409 cagaaagttt 35977418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 35998621 - 35998830
Alignment:
Q  11 cagagacaaacaatcctctaacgaaagaccttccaaaacatacgaaggaacagtacccatcatggaagcaactgagttgctacgtgtggtcactataatt 110  Q
    |||||| |||||||||| |   |||||||||| ||||| ||| | |||||||  ||||||||| ||||||| |||||| |||||||| ||||| ||||||    
T  35998621 cagagataaacaatcctttggagaaagacctttcaaaagatatggaggaacatcacccatcatcgaagcaattgagttactacgtgttgtcacgataatt 35998720  T
Q  111 ttacttcctactgcaccaactttgatcaaatcttccaactcaatccattttgcacgatcatcattccatacatcatctagcacgaggataaacttttggc 210  Q
    || ||||||  |||||||||||| |||||||||| ||| |||| ||| ||||||||||||||||||||||| ||||||| |||||  | ||||||||| |    
T  35998721 ttgcttcctggtgcaccaacttttatcaaatctttcaattcaagccactttgcacgatcatcattccatacgtcatctaacacgactaaaaacttttgac 35998820  T
Q  211 cagatagttt 220  Q
    |||| |||||    
T  35998821 cagaaagttt 35998830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 35946546 - 35946765
Alignment:
Q  11 cagagacaaacaatcctctaacgaaagaccttccaaaacatacgaaggaacagtacccatcatggaagcaactgagttgctacgtgtggtcactataatt 110  Q
    |||||||||||||| || |   |||||||||||||||| ||| | |||||||  ||||||||| ||||||| || ||| || ||||| ||||| ||||||    
T  35946546 cagagacaaacaattctttggagaaagaccttccaaaatatatggaggaacatcacccatcatcgaagcaattgcgttactgcgtgttgtcaccataatt 35946645  T
Q  111 ttacttcctactgcaccaactttgatcaaatcttccaactcaatccattttgcacgatcatcattccatacatcatctagcacgaggataaacttttggc 210  Q
    || ||||||  |||||||||||| |||||||||| ||| |||| ||| ||||||||||||||||||||||| ||||||| |||||  | ||||||||| |    
T  35946646 ttgcttcctggtgcaccaacttttatcaaatctttcaattcaagccactttgcacgatcatcattccatacgtcatctaacacgactaaaaacttttgac 35946745  T
Q  211 cagatagtttacgtcttaga 230  Q
    |||| |||||  ||||||||    
T  35946746 cagaaagtttttgtcttaga 35946765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 315 - 510
Target Start/End: Original strand, 35939415 - 35939610
Alignment:
Q  315 gagttgataattttgataacgatctgtcttatatcaaaatcaacagagacacatgcccacatcttcaattgaaaaacttcatctatcctcttatcattgt 414  Q
    |||||||| ||||| ||||  ||||| || |||||||| |||   ||||||||   ||||||||||||||| |||| || ||  | |||||||||||||     
T  35939415 gagttgattattttaataattatctgcctgatatcaaactcattggagacacacaaccacatcttcaattggaaaagttgattcaccctcttatcattga 35939514  T
Q  415 acaccaattttgcaagtgtggtcttccccaatcctccaattcccactatgggaataacacataaacttctatgaccatttccataaccttgaggat 510  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||| |||||  |||| ||| |||||||    
T  35939515 acaccaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatcaccatcaccatcaccgtgaggat 35939610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 345 - 492
Target Start/End: Original strand, 35982126 - 35982273
Alignment:
Q  345 atatcaaaatcaacagagacacatgcccacatcttcaattgaaaaacttcatctatcctcttatcattgtacaccaattttgcaagtgtggtcttcccca 444  Q
    |||||||||||| ||||||| ||  |||||||| |||| | ||||  ||  || ||||||| ||||||| | ||||||||||||||||| ||||| ||||    
T  35982126 atatcaaaatcatcagagacgcacacccacatcctcaacttaaaagattggtccatcctctcatcattgaaaaccaattttgcaagtgtagtctttccca 35982225  T
Q  445 atcctccaattcccactatgggaataacacataaacttctatgaccat 492  Q
    | |||||||||||||| ||||||||||||||||| ||| ||| |||||    
T  35982226 aacctccaattcccacaatgggaataacacataagcttttatcaccat 35982273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 345 - 492
Target Start/End: Original strand, 36003538 - 36003685
Alignment:
Q  345 atatcaaaatcaacagagacacatgcccacatcttcaattgaaaaacttcatctatcctcttatcattgtacaccaattttgcaagtgtggtcttcccca 444  Q
    |||||||||||| ||||||| ||  |||||||| |||| | ||||  ||  || ||||||| ||||||| | ||||||||||||||||| ||||| ||||    
T  36003538 atatcaaaatcatcagagacgcacacccacatcctcaacttaaaagattggtccatcctctcatcattgaaaaccaattttgcaagtgtagtctttccca 36003637  T
Q  445 atcctccaattcccactatgggaataacacataaacttctatgaccat 492  Q
    | |||||||||||||| ||||||||||||||||| ||| ||| |||||    
T  36003638 aacctccaattcccacaatgggaataacacataagcttttatcaccat 36003685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 351 - 475
Target Start/End: Original strand, 35977564 - 35977688
Alignment:
Q  351 aaatcaacagagacacatgcccacatcttcaattgaaaaacttcatctatcctcttatcattgtacaccaattttgcaagtgtggtcttccccaatcctc 450  Q
    |||||| |||||| |||  ||||||||||||| || |||| || ||| ||||||||||||||| ||||| | |||||||  |||||||||||||| ||||    
T  35977564 aaatcatcagagatacacacccacatcttcaactggaaaagttgatccatcctcttatcattgaacaccgactttgcaatggtggtcttccccaaacctc 35977663  T
Q  451 caattcccactatgggaataacaca 475  Q
    ||||||||||||| ||||| |||||    
T  35977664 caattcccactattggaatgacaca 35977688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 351 - 475
Target Start/End: Original strand, 35998976 - 35999100
Alignment:
Q  351 aaatcaacagagacacatgcccacatcttcaattgaaaaacttcatctatcctcttatcattgtacaccaattttgcaagtgtggtcttccccaatcctc 450  Q
    |||||| |||||| |||  ||||||||||||| || |||| || ||| ||||||||||||||| ||||| | |||||||  |||||||||||||| ||||    
T  35998976 aaatcatcagagatacacacccacatcttcaactggaaaagttgatccatcctcttatcattgaacaccgactttgcaatggtggtcttccccaaacctc 35999075  T
Q  451 caattcccactatgggaataacaca 475  Q
    ||||||||||||| ||||| |||||    
T  35999076 caattcccactattggaatgacaca 35999100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 65 - 220
Target Start/End: Original strand, 35957808 - 35957963
Alignment:
Q  65 acccatcatggaagcaactgagttgctacgtgtggtcactataattttacttcctactgcaccaactttgatcaaatcttccaactcaatccattttgca 164  Q
    ||||||||| ||||||| |||||| || ||||| ||||| |||||||| ||||||  |||||||||||| ||||| ||   ||| |||| ||| ||||||    
T  35957808 acccatcattgaagcaattgagttactgcgtgttgtcacgataattttgcttcctggtgcaccaacttttatcaattcgatcaattcaagccactttgca 35957907  T
Q  165 cgatcatcattccatacatcatctagcacgaggataaacttttggccagatagttt 220  Q
    ||||||||||||||||| ||||||| ||| |  | ||||||||| ||||| |||||    
T  35957908 cgatcatcattccatacgtcatctaacacaactaaaaacttttgaccagaaagttt 35957963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 370 - 475
Target Start/End: Original strand, 35946923 - 35947028
Alignment:
Q  370 cccacatcttcaattgaaaaacttcatctatcctcttatcattgtacaccaattttgcaagtgtggtcttccccaatcctccaattcccactatgggaat 469  Q
    ||||||||||||| || |||| || || |||||||||||||||| ||||| | || |||||||||||||||| ||| ||||||||||||||||| |||||    
T  35946923 cccacatcttcaactggaaaagttgatgtatcctcttatcattgaacaccgacttcgcaagtgtggtcttccacaaacctccaattcccactattggaat 35947022  T
Q  470 aacaca 475  Q
     |||||    
T  35947023 gacaca 35947028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 370 - 475
Target Start/End: Original strand, 35958128 - 35958233
Alignment:
Q  370 cccacatcttcaattgaaaaacttcatctatcctcttatcattgtacaccaattttgcaagtgtggtcttccccaatcctccaattcccactatgggaat 469  Q
    ||||||||||||| || |||| || ||| ||||||||||||||| ||||| | ||||||||||| ||||| ||||| ||||||||||||||||| |||||    
T  35958128 cccacatcttcaactggaaaagttgatccatcctcttatcattgaacaccgactttgcaagtgttgtctttcccaaacctccaattcccactattggaat 35958227  T
Q  470 aacaca 475  Q
     |||||    
T  35958228 gacaca 35958233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 50 - 221
Target Start/End: Original strand, 35939131 - 35939306
Alignment:
Q  50 atacgaaggaacagtacccatcatggaagcaactgagttgctacgtgtggtcactataattttacttcctactgcaccaactttgatcaaatcttccaac 149  Q
    |||||| |||||||| ||| |||| |||||||  || || || ||||| ||||| || ||||| | | ||||||  |||||||| |||||||||| ||||    
T  35939131 atacgagggaacagtgcccgtcattgaagcaatcgatttactgcgtgttgtcacaatgattttgcattctactgtgccaacttttatcaaatctttcaac 35939230  T
Q  150 tcaatccattttgcacgat----catcattccatacatcatctagcacgaggataaacttttggccagatagttta 221  Q
    ||||||||||||| |||||    ||||||||||||  ||||||| |||||| | ||||||||| ||||| ||||||    
T  35939231 tcaatccattttgaacgatcatccatcattccatatgtcatctaacacgagtaaaaacttttgaccagaaagttta 35939306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 33 - 169
Target Start/End: Original strand, 35952192 - 35952328
Alignment:
Q  33 gaaagaccttccaaaacatacgaaggaacagtacccatcatggaagcaactgagttgctacgtgtggtcactataattttacttcctactgcaccaactt 132  Q
    |||||||||| |||||||||||| |||||| ||||||||||  |||||| |||  | |||||||| ||||| |||||||| ||| ||  |||||||||||    
T  35952192 gaaagacctttcaaaacatacgagggaacattacccatcatccaagcaattgaactactacgtgttgtcaccataattttgctttctggtgcaccaactt 35952291  T
Q  133 tgatcaaatcttccaactcaatccattttgcacgatc 169  Q
      | ||||| || ||| |||||||| |||||||||||    
T  35952292 ctagcaaatatttcaattcaatccactttgcacgatc 35952328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 370 - 482
Target Start/End: Original strand, 35955177 - 35955289
Alignment:
Q  370 cccacatcttcaattgaaaaacttcatctatcctcttatcattgtacaccaattttgcaagtgtggtcttccccaatcctccaattcccactatgggaat 469  Q
    |||||||||||||||  |||| || ||| | ||| | ||||||| |||| || ||||||||||||||||| |||||||||||||| || | |||||||||    
T  35955177 cccacatcttcaatttgaaaatttgatccaccctttcatcattgaacactaactttgcaagtgtggtctttcccaatcctccaatacctattatgggaat 35955276  T
Q  470 aacacataaactt 482  Q
    |||||| ||||||    
T  35955277 aacacacaaactt 35955289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 403 - 472
Target Start/End: Original strand, 35965669 - 35965738
Alignment:
Q  403 tcttatcattgtacaccaattttgcaagtgtggtcttccccaatcctccaattcccactatgggaataac 472  Q
    ||||||||||| ||||||| ||||||||||||||||||||||| || |||||||| | ||||||||||||    
T  35965669 tcttatcattgaacaccaagtttgcaagtgtggtcttccccaagccaccaattcctagtatgggaataac 35965738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 348 - 491
Target Start/End: Original strand, 29602862 - 29603005
Alignment:
Q  348 tcaaaatcaacagagacacatgcccacatcttcaattgaaaaacttcatctatcctcttatcattgtacaccaattttgcaagtgtggtcttccccaatc 447  Q
    ||||||||| | ||||||||  |||||||||| ||| | |||   || ||||  |||||||||||| |||||   ||||||||||| ||||| ||||| |    
T  29602862 tcaaaatcatcggagacacacacccacatctttaatgggaaagtctcgtctaaactcttatcattgaacaccgtctttgcaagtgtagtctttcccaagc 29602961  T
Q  448 ctccaattcccactatgggaataacacataaacttctatgacca 491  Q
    |||||||||| || || ||||||||| | | |||| ||||||||    
T  29602962 ctccaattccaacaataggaataacagagagacttttatgacca 29603005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 348 - 491
Target Start/End: Complemental strand, 29750432 - 29750289
Alignment:
Q  348 tcaaaatcaacagagacacatgcccacatcttcaattgaaaaacttcatctatcctcttatcattgtacaccaattttgcaagtgtggtcttccccaatc 447  Q
    ||||||||| | ||||||||  |||||||||| ||| ||||    || ||||  |||||||||||| |||||   ||||||||||| ||||| ||||| |    
T  29750432 tcaaaatcatcggagacacacacccacatctttaatggaaatgtctcgtctaaactcttatcattgaacaccgtctttgcaagtgtagtctttcccaagc 29750333  T
Q  448 ctccaattcccactatgggaataacacataaacttctatgacca 491  Q
    |||||||||| || || ||||||||| | | |||| ||||||||    
T  29750332 ctccaattccaacaataggaataacagagagacttttatgacca 29750289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 467 - 588
Target Start/End: Original strand, 35973540 - 35973661
Alignment:
Q  467 aataacacataaacttctatgaccatttccataaccttgaggatcggaatccatcaaaagctcgataattgcttccttgtcattctcccttcctataaca 566  Q
    ||||||||| |||||| ||| ||| | ||||| ||||||||||   |  | ||||| ||||| ||||||| ||||| | ||||||||||| || ||||||    
T  35973540 aataacacacaaacttttatcaccgtctccatcaccttgaggacgtggttgcatcagaagcttgataatttcttccctatcattctccctcccaataaca 35973639  T
Q  567 cttgaaacatcaatatgggaat 588  Q
    |||||| |||| | ||||||||    
T  35973640 cttgaagcatcgacatgggaat 35973661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 467 - 588
Target Start/End: Original strand, 35994952 - 35995073
Alignment:
Q  467 aataacacataaacttctatgaccatttccataaccttgaggatcggaatccatcaaaagctcgataattgcttccttgtcattctcccttcctataaca 566  Q
    ||||||||| |||||| ||| ||| | ||||| ||||||||||   |  | ||||| ||||| ||||||| ||||| | ||||||||||| || ||||||    
T  35994952 aataacacacaaacttttatcaccgtctccatcaccttgaggacgtggttgcatcagaagcttgataatttcttccctatcattctccctcccaataaca 35995051  T
Q  567 cttgaaacatcaatatgggaat 588  Q
    |||||| |||| | ||||||||    
T  35995052 cttgaagcatcgacatgggaat 35995073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 473
Target Start/End: Complemental strand, 29743395 - 29743270
Alignment:
Q  348 tcaaaatcaacagagacacatgcccacatcttcaattgaaaaacttcatctatcctcttatcattgtacaccaattttgcaagtgtggtcttccccaatc 447  Q
    ||||||||| | ||||||||  |||||||||| ||| |||||   || ||||  |||||||||||| ||||    |||||||| || ||||| ||||| |    
T  29743395 tcaaaatcatcggagacacacacccacatctttaatggaaaagtctcgtctaaactcttatcattgaacactgtctttgcaagcgtagtctttcccaagc 29743296  T
Q  448 ctccaattcccactatgggaataaca 473  Q
    |||||||||| || || |||||||||    
T  29743295 ctccaattccaacaataggaataaca 29743270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 12 - 208
Target Start/End: Original strand, 18125475 - 18125671
Alignment:
Q  12 agagacaaacaatcctctaacgaaagaccttccaaaacatacgaaggaacagtacccatcatggaagcaactgagttgctacgtgtggtcactataattt 111  Q
    ||||| ||||||||||  || |||||||||| ||||||||| || |||||| |||||||||| ||||||| ||||||  ||||||| ||||| |||||||    
T  18125475 agagataaacaatccttcaaagaaagaccttgcaaaacatatgagggaacattacccatcatcgaagcaattgagttattacgtgttgtcaccataattt 18125574  T
Q  112 tacttcctactgcaccaactttgatcaaatcttccaactcaatccattttgcacgatcatcattccatacatcatctagcacgaggataaacttttg 208  Q
    | ||||||  ||  |||||||| |||||||||| |||||| ||||| ||||||||||||||||||||||||||||||| ||| || | |||||||||    
T  18125575 tgcttcctcttgtgccaacttttatcaaatctttcaactcgatccactttgcacgatcatcattccatacatcatctaacacaagtaaaaacttttg 18125671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 45 - 250
Target Start/End: Original strand, 18117855 - 18118060
Alignment:
Q  45 aaaacatacgaaggaacagtacccatcatggaagcaactgagttgctacgtgtggtcactataattttacttcctactgcaccaactttgatcaaatctt 144  Q
    |||||||| || ||||||||||||||||| || |||| ||||||||| ||||| ||| | || | ||| ||||||||||  |||||||| ||||||||||    
T  18117855 aaaacataggagggaacagtacccatcatcgatgcaattgagttgctgcgtgttgtcgccatgactttgcttcctactgtgccaactttaatcaaatctt 18117954  T
Q  145 ccaactcaatccattttgcacgatcatcattccatacatcatctagcacgaggataaacttttggccagatagtttacgtcttagatgaatttgtagttg 244  Q
     |||||| ||||||||| ||| |||||||||||||| |||||||| ||| || | |||| |||  ||| | ||||||||||| ||| || ||||||| ||    
T  18117955 tcaactcgatccattttacacaatcatcattccatatatcatctaacacaagtaaaaaccttttaccataaagtttacgtctcagacgactttgtagctg 18118054  T
Q  245 ctcaat 250  Q
    ||||||    
T  18118055 ctcaat 18118060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 348 - 568
Target Start/End: Original strand, 18125814 - 18126034
Alignment:
Q  348 tcaaaatcaacagagacacatgcccacatcttcaattgaaaaacttcatctatcctcttatcattgtacaccaattttgcaagtgtggtcttccccaatc 447  Q
    ||||||| | ||||||||||  ||||||||||||||||||| | ||||||||| |||||||||||| | || |  ||||| | ||||||||||||||| |    
T  18125814 tcaaaattatcagagacacacacccacatcttcaattgaaagagttcatctattctcttatcattgaaaacaagctttgccaatgtggtcttccccaagc 18125913  T
Q  448 ctccaattcccactatgggaataacacataaacttctatgaccatttccataaccttgaggatcggaatccatcaaaagctcgataattgcttccttgtc 547  Q
    | ||||||||||| |||||||||||| ||| |||| ||| |||||  |||| ||| |||||||  |  | ||||||||||| ||||||  ||||| | ||    
T  18125914 caccaattcccaccatgggaataacagatagacttttatcaccatcaccatcaccatgaggatgtgcttgcatcaaaagcttgataatctcttccctatc 18126013  T
Q  548 attctcccttcctataacact 568  Q
    | |||| |||||||| |||||    
T  18126014 actctctcttcctattacact 18126034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 372 - 453
Target Start/End: Original strand, 18118194 - 18118275
Alignment:
Q  372 cacatcttcaattgaaaaacttcatctatcctcttatcattgtacaccaattttgcaagtgtggtcttccccaatcctccaa 453  Q
    ||||||||||||||||||| |||||| ||||||||||| ||| | ||||| |||||||||||||||||||||||||||||||    
T  18118194 cacatcttcaattgaaaaaattcatcgatcctcttatcgttgaataccaactttgcaagtgtggtcttccccaatcctccaa 18118275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 12 - 207
Target Start/End: Complemental strand, 26328949 - 26328754
Alignment:
Q  12 agagacaaacaatcctctaacgaaagaccttccaaaacatacgaaggaacagtacccatcatggaagcaactgagttgctacgtgtggtcactataattt 111  Q
    |||||||||||||  || || ||||||||||  |||  ||||   ||||| || |||||||| |||||||   |||| |||||||| |||||||  ||||    
T  26328949 agagacaaacaattatccaaagaaagaccttttaaagtatacatgggaaccgttcccatcatcgaagcaatcaagttactacgtgttgtcactaagattt 26328850  T
Q  112 tacttcctactgcaccaactttgatcaaatcttccaactcaatccattttgcacgatcatcattccatacatcatctagcacgaggataaactttt 207  Q
    | ||| |||||||||||||||| |||| ||||| ||||||||||||||||| ||| | ||||| ||||| ||||||||  ||||| | ||||||||    
T  26328849 tgctttctactgcaccaacttttatcagatctttcaactcaatccattttgaacggttatcatcccatatatcatctaagacgagtacaaactttt 26328754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 473
Target Start/End: Complemental strand, 49340670 - 49340545
Alignment:
Q  348 tcaaaatcaacagagacacatgcccacatcttcaattgaaaaacttcatctatcctcttatcattgtacaccaattttgcaagtgtggtcttccccaatc 447  Q
    ||||||||| ||||||||||  |||||||||||||| |||||   |||||||  |||||||||||  |||| |  ||||||||||| || || || ||||    
T  49340670 tcaaaatcatcagagacacacacccacatcttcaatggaaaagtctcatctaaactcttatcattaaacacgacctttgcaagtgtagtttttcctaatc 49340571  T
Q  448 ctccaattcccactatgggaataaca 473  Q
    |||||||||| || || |||||||||    
T  49340570 ctccaattccaacaataggaataaca 49340545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 348 - 457
Target Start/End: Complemental strand, 49352034 - 49351925
Alignment:
Q  348 tcaaaatcaacagagacacatgcccacatcttcaattgaaaaacttcatctatcctcttatcattgtacaccaattttgcaagtgtggtcttccccaatc 447  Q
    ||||||||| ||||||||||  |||||||||||||| |||||   |||||||  |||||||||||  ||||    ||||||||||| ||||| || ||||    
T  49352034 tcaaaatcatcagagacacacacccacatcttcaatggaaaagtctcatctaaactcttatcattaaacactgcctttgcaagtgtagtctttcctaatc 49351935  T
Q  448 ctccaattcc 457  Q
    ||||||||||    
T  49351934 ctccaattcc 49351925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 473
Target Start/End: Original strand, 32784242 - 32784366
Alignment:
Q  349 caaaatcaacagagacacatgcccacatcttcaattgaaaaact-tcatctatcctcttatcattgtacaccaattttgcaagtgtggtcttccccaatc 447  Q
    |||||||| ||||||||||  ||||||||||||| ||||||| | |||||||  |||||||||||  ||||    |||| |||||| || || || ||||    
T  32784242 caaaatcatcagagacacaaacccacatcttcaa-tgaaaaagtctcatctaaactcttatcattaaacactgcctttgaaagtgtagtttttcctaatc 32784340  T
Q  448 ctccaattcccactatgggaataaca 473  Q
    |||||||||| || || |||||||||    
T  32784341 ctccaattccaacaataggaataaca 32784366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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