View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10329_low_3 (Length: 455)
Name: NF10329_low_3
Description: NF10329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10329_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 227 - 312
Target Start/End: Complemental strand, 487676 - 487591
Alignment:
| Q |
227 |
tttcaaacaaatatattaagataacgtaagaaggaagccaaaaacatttttctaacaccttattttatcattcagctaaatacgaa |
312 |
Q |
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| T |
487676 |
tttcaaacaaatatattaagataacgtaagaaggaagtcaaaaacatttttctaacaccttattttatcattcagctaaatacgaa |
487591 |
T |
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Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 487940 - 487881
Alignment:
| Q |
26 |
acaatttttgtaatttaaaaaggaacagataacgtgccgaccaaaagagtcaaaataatt |
85 |
Q |
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| T |
487940 |
acaatttttagaatttaaaaagaaacagataacgtgccgaccaaaatagtcaaaataatt |
487881 |
T |
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