View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10329_low_6 (Length: 284)
Name: NF10329_low_6
Description: NF10329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10329_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 271
Target Start/End: Original strand, 34136088 - 34136352
Alignment:
| Q |
8 |
gcctatatcaattcaatatttgaagatcaaacataatgaacggtaataactaaattttcttttattccgagataaaattcttacataatgcacactagta |
107 |
Q |
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| T |
34136088 |
gcctatatcaattcaatatttga-gatcaaacataatgaacggtaataactaaattttcttttattctgagataaaattcttacataatgcacactagta |
34136186 |
T |
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| Q |
108 |
atttcaatactagtaaatttgattgcagccactcactcatttcagaaacactgatcaatctttggttgtgt--atgagctaagtgatacatttattaaac |
205 |
Q |
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| T |
34136187 |
atttcaatactagcaaatttgattgcagccactcactcatttcagaaacactgatcaatctttggttgtgtaaatgagctaagtgatacatttattaaac |
34136286 |
T |
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| Q |
206 |
tatctttctctactgtagcttataatgataaatttgaagattctcctcatcttgtttcttgaaatt |
271 |
Q |
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| T |
34136287 |
tatctttctctactgtagcttataatgataaatttgaagattctcctcatcttgtttcttgaaatt |
34136352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 34139049 - 34139301
Alignment:
| Q |
14 |
atcaattcaatatttgaagatcaaacataatgaacggtaataactaaattttcttttattccgagataaaattcttacataatgcacactagtaatttca |
113 |
Q |
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| T |
34139049 |
atcaaatcaatttttga-gatcaaacataatgaacggtattaactttattgtcttttattatgagataaattgcatacataatgcaccc-agtaattcta |
34139146 |
T |
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| Q |
114 |
atactagtaaatttgattgcagccactcactcatttcagaaacactgatcaatctttggttgtgta--tgagctaagtgatacatttattaaactatctt |
211 |
Q |
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| T |
34139147 |
atac----aaatttgattgtagccagttgctcattttagaaacaccgatcaatctttggttgtttacatgagctaagtcatacatttattaaaatatctt |
34139242 |
T |
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| Q |
212 |
tctctactgtagcttata--atgataaatttgaagattctcctcatcttgtttcttgaa |
268 |
Q |
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| T |
34139243 |
tctctaaggtagcttatataatgataaatttgaagattctcctcttcttgtttcttgaa |
34139301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 34141933 - 34141985
Alignment:
| Q |
220 |
gtagcttataatgataaatttgaagattctcctcatcttgtttcttgaaattg |
272 |
Q |
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| T |
34141933 |
gtagcttataatgataaatttgaagattctccacatcttgtttcttgatattg |
34141985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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