View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10329_low_9 (Length: 238)

Name: NF10329_low_9
Description: NF10329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10329_low_9
NF10329_low_9
[»] chr7 (9 HSPs)
chr7 (1-223)||(36217105-36217327)
chr7 (24-223)||(35982399-35982598)
chr7 (24-223)||(36003811-36004010)
chr7 (56-223)||(35977863-35978030)
chr7 (56-223)||(35999275-35999442)
chr7 (33-223)||(36221089-36221280)
chr7 (56-223)||(35947203-35947370)
chr7 (56-223)||(35958408-35958575)
chr7 (40-223)||(36226294-36226477)
[»] chr1 (1 HSPs)
chr1 (40-165)||(18126106-18126231)
[»] chr2 (1 HSPs)
chr2 (33-90)||(26328349-26328406)


Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 36217327 - 36217105
Alignment:
Q  1 tattgtgcacagaaattccgggctcaacatgaattctcacaagtccaaacttggtcccatcagctgccactttatccaatctatctctaatctctttgat 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36217327 tattgtgcacagaaagtccgggctcaacatgaattctcacaagtccaaacttggtcccatcagctgccactttatccaatctatctctaatctctttgat 36217228  T
Q  101 ttgacgtgacatcctaaaacggaaagcaagcggattagaggaagaaaagaagtggcataccttcaaccgtgtgcttccagaagcttcaacaaattgcttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36217227 ttgacgtgacatcctaaaacggaaagcaagcggattagaggaagaaaagaagtggcataccttcaaccgtgtgcttccagaagcttcaacaaattgcttt 36217128  T
Q  201 ctcctgtcttgcaactcaaatcc 223  Q
    |||||||||||||||||||||||    
T  36217127 ctcctgtcttgcaactcaaatcc 36217105  T

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Target: chr7; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 24 - 223
Target Start/End: Original strand, 35982399 - 35982598
Alignment:
Q  24 tcaacatgaattctcacaagtccaaacttggtcccatcagctgccactttatccaatctatctctaatctctttgatttgacgtgacatcctaaaacgga 123  Q
    ||||||| |||||||| |||||||||||| ||||||||||||||||| ||||| |||||||  ||||| ||||||||| || ||| |||||||| ||| |    
T  35982399 tcaacatcaattctcataagtccaaacttagtcccatcagctgccaccttatctaatctattcctaatttctttgattcgatgtgccatcctaagacgaa 35982498  T
Q  124 aagcaagcggattagaggaagaaaagaagtggcataccttcaaccgtgtgcttccagaagcttcaacaaattgctttctcctgtcttgcaactcaaatcc 223  Q
    ||||||| ||||||||||||||||||||||||| |||||||  ||| ||||| |||||||||||||||| ||||||||   ||||||| |||||||||||    
T  35982499 aagcaagtggattagaggaagaaaagaagtggcgtaccttcgtccgagtgctgccagaagcttcaacaacttgctttcgtttgtcttgaaactcaaatcc 35982598  T

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Target: chr7; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 24 - 223
Target Start/End: Original strand, 36003811 - 36004010
Alignment:
Q  24 tcaacatgaattctcacaagtccaaacttggtcccatcagctgccactttatccaatctatctctaatctctttgatttgacgtgacatcctaaaacgga 123  Q
    ||||||| |||||||| |||||||||||| ||||||||||||||||| ||||| |||||||  ||||| ||||||||| || ||| |||||||| ||| |    
T  36003811 tcaacatcaattctcataagtccaaacttagtcccatcagctgccaccttatctaatctattcctaatttctttgattcgatgtgccatcctaagacgaa 36003910  T
Q  124 aagcaagcggattagaggaagaaaagaagtggcataccttcaaccgtgtgcttccagaagcttcaacaaattgctttctcctgtcttgcaactcaaatcc 223  Q
    ||||||| ||||||||||||||||||||||||| |||||||  ||| ||||| |||||||||||||||| ||||||||   ||||||| |||||||||||    
T  36003911 aagcaagtggattagaggaagaaaagaagtggcgtaccttcgtccgagtgctgccagaagcttcaacaacttgctttcgtttgtcttgaaactcaaatcc 36004010  T

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Target: chr7; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 56 - 223
Target Start/End: Original strand, 35977863 - 35978030
Alignment:
Q  56 cccatcagctgccactttatccaatctatctctaatctctttgatttgacgtgacatcctaaaacggaaagcaagcggattagaggaagaaaagaagtgg 155  Q
    ||||||||||||||| ||||||| |||||| |||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||    
T  35977863 cccatcagctgccaccttatccattctatccctaatctctttgatttgacgtgccatcctaaaacggaaaacaagtggattagaggaagaaaagaagtgg 35977962  T
Q  156 cataccttcaaccgtgtgcttccagaagcttcaacaaattgctttctcctgtcttgcaactcaaatcc 223  Q
    | |||||||| |||| |||||| ||||||||  |||| |||||||| | |||||||||| | ||||||    
T  35977963 cgtaccttcacccgtctgcttcgagaagctttcacaacttgctttcgcttgtcttgcaagttaaatcc 35978030  T

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Target: chr7; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 56 - 223
Target Start/End: Original strand, 35999275 - 35999442
Alignment:
Q  56 cccatcagctgccactttatccaatctatctctaatctctttgatttgacgtgacatcctaaaacggaaagcaagcggattagaggaagaaaagaagtgg 155  Q
    ||||||||||||||| ||||||| |||||| |||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||    
T  35999275 cccatcagctgccaccttatccattctatccctaatctctttgatttgacgtgccatcctaaaacggaaaacaagtggattagaggaagaaaagaagtgg 35999374  T
Q  156 cataccttcaaccgtgtgcttccagaagcttcaacaaattgctttctcctgtcttgcaactcaaatcc 223  Q
    | |||||||| |||| |||||| ||||||||  |||| |||||||| | |||||||||| | ||||||    
T  35999375 cgtaccttcacccgtctgcttcgagaagctttcacaacttgctttcgcttgtcttgcaagttaaatcc 35999442  T

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Target: chr7; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 33 - 223
Target Start/End: Complemental strand, 36221280 - 36221089
Alignment:
Q  33 attctcacaagtccaaacttggtcccatcagctgccactttatccaatctatctctaatctctttgatttgacgtgacatcctaaaacggaaagcaagcg 132  Q
    |||||||||||||||||| | ||||| ||||||||||| |||| |||||||||||||||||||||||||| | |||||||||||||||||||||| || |    
T  36221280 attctcacaagtccaaaccttgtcccgtcagctgccaccttattcaatctatctctaatctctttgattttatgtgacatcctaaaacggaaagctagtg 36221181  T
Q  133 gattagaggaagaaaagaagtggcataccttcaaccgtgtgcttccagaagcttcaacaa-attgctttctcctgtcttgcaactcaaatcc 223  Q
    |||| ||||||||||| ||||||||||||||||  || ||||| ||||||||||  ||||  ||  ||| || |||||||||||||||||||    
T  36221180 gatttgaggaagaaaacaagtggcataccttcattcgagtgctgccagaagctttcacaattttattttttcttgtcttgcaactcaaatcc 36221089  T

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Target: chr7; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 56 - 223
Target Start/End: Original strand, 35947203 - 35947370
Alignment:
Q  56 cccatcagctgccactttatccaatctatctctaatctctttgatttgacgtgacatcctaaaacggaaagcaagcggattagaggaagaaaagaagtgg 155  Q
    ||||||||||||||| ||||||| |||||| |||||||||||||||||||||| |||||||||||| ||| |||| ||||||||||||||||||||||||    
T  35947203 cccatcagctgccaccttatccattctatccctaatctctttgatttgacgtgccatcctaaaacgaaaaacaagtggattagaggaagaaaagaagtgg 35947302  T
Q  156 cataccttcaaccgtgtgcttccagaagcttcaacaaattgctttctcctgtcttgcaactcaaatcc 223  Q
      || ||||| ||||||||||| ||||||||  |||| |||||||| | |||||||||| | ||||||    
T  35947303 actaacttcacccgtgtgcttcgagaagctttcacaacttgctttcgcttgtcttgcaagttaaatcc 35947370  T

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Target: chr7; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 56 - 223
Target Start/End: Original strand, 35958408 - 35958575
Alignment:
Q  56 cccatcagctgccactttatccaatctatctctaatctctttgatttgacgtgacatcctaaaacggaaagcaagcggattagaggaagaaaagaagtgg 155  Q
    |||||| |||||||| |||||||||||||| |||||||||||||||||  | | |||  |||||||||||||||| | ||||||||||||||| ||||||    
T  35958408 cccatccgctgccaccttatccaatctatccctaatctctttgatttggtgcgccattttaaaacggaaagcaagtgaattagaggaagaaaacaagtgg 35958507  T
Q  156 cataccttcaaccgtgtgcttccagaagcttcaacaaattgctttctcctgtcttgcaactcaaatcc 223  Q
    | |||||||| ||||||||||||||||||||| |||| ||| |||| | |||||||||| ||||||||    
T  35958508 cgtaccttcacccgtgtgcttccagaagcttccacaacttgttttcgcttgtcttgcaagtcaaatcc 35958575  T

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Target: chr7; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 40 - 223
Target Start/End: Original strand, 36226294 - 36226477
Alignment:
Q  40 caagtccaaacttggtcccatcagctgccactttatccaatctatctctaatctctttgatttgacgtgacatcctaaaacggaaagcaagcggattaga 139  Q
    ||||||||||| | ||||||||||||||||| |||| ||||||||| ||||||||||||||| ||| || |||| |||||||||||||||| ||| ||||    
T  36226294 caagtccaaacctagtcccatcagctgccaccttattcaatctatccctaatctctttgattcgacatgccatcttaaaacggaaagcaagtggactaga 36226393  T
Q  140 ggaagaaaagaagtggcataccttcaaccgtgtgcttccagaagcttcaacaaattgctttctcctgtcttgcaactcaaatcc 223  Q
    ||||||||| || |||| |||||||| ||  ||||| |  |||||||| |||| ||||||||   ||||||| || ||||||||    
T  36226394 ggaagaaaaaaattggcgtaccttcatcctagtgctgcatgaagcttccacaacttgctttcgtttgtcttgaaattcaaatcc 36226477  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 165
Target Start/End: Original strand, 18126106 - 18126231
Alignment:
Q  40 caagtccaaacttggtcccatcagctgccactttatccaatctatctctaatctctttgatttgacgtgacatcctaaaacggaaagcaagcggattaga 139  Q
    ||||||||||||| |||||||| | ||| || |||||||||||||| ||||| ||||| |||||   || |||||||| ||| |||||||| | ||| ||    
T  18126106 caagtccaaacttagtcccatcggttgctaccttatccaatctatccctaatatctttaatttgttttgccatcctaagacgaaaagcaagtgaattgga 18126205  T
Q  140 ggaagaaaagaagtggcataccttca 165  Q
    |||| | |||||||||| ||||||||    
T  18126206 ggaacagaagaagtggcgtaccttca 18126231  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 26328406 - 26328349
Alignment:
Q  33 attctcacaagtccaaacttggtcccatcagctgccactttatccaatctatctctaa 90  Q
    |||||| |||| ||||||||  ||||||||||| | || |||||||||||||||||||    
T  26328406 attctctcaagaccaaacttattcccatcagctactaccttatccaatctatctctaa 26328349  T

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