View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1032_high_1 (Length: 508)
Name: NF1032_high_1
Description: NF1032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1032_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 29 - 303
Target Start/End: Complemental strand, 1433367 - 1433092
Alignment:
| Q |
29 |
aatatcaatacaaattataaatatatatgcattgactcatatctcttcatctaaattcatttttaacataacatatacaaaaattataaacaaccttgta |
128 |
Q |
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| T |
1433367 |
aatatcaatacaaattatacatatatatgcattgactcatatctcttcatctaaattcatttttaacataacatatacaaaaattataaacaaccttgta |
1433268 |
T |
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| Q |
129 |
aagttttgagtttcattctttggagaacactagtaaaaggtaacatttattgtctttcttatgttgtttctgttattatgattatgtttcagttcatg-n |
227 |
Q |
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| T |
1433267 |
aagttttgagtttcattctttggagaacactagtaaaaggtaacatttattgtctttcttatgttgtttctgttattatgattatgtttcagttcatgtt |
1433168 |
T |
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| Q |
228 |
nnnnnnnagttcagtttcatttgtttcatgttcattatgagtttatgtcttcattgattttcttgtgttcacattg |
303 |
Q |
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| T |
1433167 |
tttttttagttcagtttcatttgtttcatgttctttatgaatttatgtcttcattgattttcttgtgttcacattg |
1433092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 330 - 446
Target Start/End: Complemental strand, 1432920 - 1432804
Alignment:
| Q |
330 |
atgagtttgatcactgacaaaaatggaatttcagaagaaaagnnnnnnngtgttgtgtaataggaaagatagaatctgtgtagaagctatgtcaagcaat |
429 |
Q |
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| T |
1432920 |
atgagtttgatcactgacaaaaatggaatttcagaagaaaagtttttttgtgttgtgtaataggaaagatagaatctgtgaagaagctatgtcaagcaat |
1432821 |
T |
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| Q |
430 |
caaaccaggtggaataa |
446 |
Q |
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| T |
1432820 |
caaaccaggtggaataa |
1432804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 508
Target Start/End: Complemental strand, 1432773 - 1432742
Alignment:
| Q |
477 |
ctgtgatgagttataaagtttgattcatttct |
508 |
Q |
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| T |
1432773 |
ctgtgatgagttataaagtttgattcatttct |
1432742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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