View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1032_high_2 (Length: 394)

Name: NF1032_high_2
Description: NF1032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1032_high_2
NF1032_high_2
[»] chr8 (8 HSPs)
chr8 (1-366)||(5842289-5842657)
chr8 (1-366)||(5848999-5849367)
chr8 (7-366)||(5886590-5886949)
chr8 (7-351)||(5983558-5983911)
chr8 (7-142)||(5948163-5948298)
chr8 (4-351)||(5920371-5920730)
chr8 (7-348)||(5959043-5959393)
chr8 (185-351)||(5947957-5948129)
[»] chr2 (1 HSPs)
chr2 (8-120)||(42788723-42788835)
[»] chr3 (1 HSPs)
chr3 (41-84)||(34626445-34626488)


Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 5842657 - 5842289
Alignment:
Q  1 aacttgtttggacagatgggcacaaattgccaagtacttgccaggaagaacggataatgaggtgaaaaacttttggaattcaagcataaagaaaaaactc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5842657 aacttgtttggacagatgggcacaaattgccaagtacttgccaggaagaaccgataatgaggtgaaaaacttttggaattcaagcataaagaaaaaactc 5842558  T
Q  101 ctttctgatgatattgttccatccttcaccccattttatgat---attcacctcccctacagtgctggttttaaggaaagtatttttcctttaaatgcaa 197  Q
    ||||||||||||||||||||||||||||||||||||||||||   ||||||||| ||||||||| |||||||||||||| | ||||||||||||||||||    
T  5842557 ctttctgatgatattgttccatccttcaccccattttatgatgatattcacctctcctacagtgatggttttaaggaaactttttttcctttaaatgcaa 5842458  T
Q  198 accctaatgtgatgctaaacttcaatcctcaccatcaagatcacctatacctttcaaactcgtctccaaatatgcaatgttttcaccaaactggtacaat 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5842457 accctaatgtgatgctaaacttcaatcctcaccatcaagatcacctatacctttcaaactcgtctccaaatatgcaatgttttcaccaaactggtacaat 5842358  T
Q  298 ggtagacatcaataaccatttcaatgccagattcctacccaatcaaaatccaattatacctgaaatagt 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5842357 ggtagacatcaataaccatttcaatgccagattcctacccaatcaaaatccaattatacctgaaatagt 5842289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 5849367 - 5848999
Alignment:
Q  1 aacttgtttggacagatgggcacaaattgccaagtacttgccaggaagaacggataatgaggtgaaaaacttttggaattcaagcataaagaaaaaactc 100  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5849367 aacttgtttggacagatgggcacaaattaccaagcacttgccaggaagaacggataatgaggtgaaaaacttttggaattcaagcataaagaaaaaactc 5849268  T
Q  101 ctttctgatgatattgttccatccttcaccccattttatgat---attcacctcccctacagtgctggttttaaggaaagtatttttcctttaaatgcaa 197  Q
    ||||||||||||||||||||||||||||||||||||||||||   ||||||||| ||||||||| |||||||||||||| | ||||||||||||||||||    
T  5849267 ctttctgatgatattgttccatccttcaccccattttatgatgatattcacctctcctacagtgatggttttaaggaaactttttttcctttaaatgcaa 5849168  T
Q  198 accctaatgtgatgctaaacttcaatcctcaccatcaagatcacctatacctttcaaactcgtctccaaatatgcaatgttttcaccaaactggtacaat 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5849167 accctaatgtgatgctaaacttcaatcctcaccatcaagatcacctatacctttcaaactcgtctccaaatatgcaatgttttcaccaaactggtacaat 5849068  T
Q  298 ggtagacatcaataaccatttcaatgccagattcctacccaatcaaaatccaattatacctgaaatagt 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5849067 ggtagacatcaataaccatttcaatgccagattcctacccaatcaaaatccaattatacctgaaatagt 5848999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 7 - 366
Target Start/End: Complemental strand, 5886949 - 5886590
Alignment:
Q  7 tttggacagatgggcacaaattgccaagtacttgccaggaagaacggataatgaggtgaaaaacttttggaattcaagcataaagaaaaaactcctttct 106  Q
    |||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  5886949 tttggacagatgggcacaaattgctaagcacttaccaggaagaacggataatgaggtgaaaaacttttggaattcaagcatgaagaaaaaactcatttct 5886850  T
Q  107 gatgatattgttccatccttcaccccattttatgatattcacctcccctacagtgctggttttaaggaaagtatttttcctttaaatgcaaaccctaatg 206  Q
     |||||| ||||||||| |||||||||||||||||||||||| ||||||||| | | |||| |||| ||||| | |||||||||||||||||||||||||    
T  5886849 tatgataatgttccatctttcaccccattttatgatattcacatcccctacaataccggttctaagaaaagtttctttcctttaaatgcaaaccctaatg 5886750  T
Q  207 tgatgctaaacttcaatcctcaccatcaagatcacctatacctttcaaactcgtctccaaatatgcaatgttttcaccaaactggtacaatggtagacat 306  Q
    |||| ||||||||||||||| |||||||||||| ||||||||||||||| || | ||||||| ||||||||||||| ||| ||| ||||| |||||||||    
T  5886749 tgatcctaaacttcaatccttaccatcaagatctcctatacctttcaaattcatttccaaatctgcaatgttttcaacaacctgatacaaaggtagacat 5886650  T
Q  307 caataaccatttcaatgccagattcctacccaatcaaaatccaattatacctgaaatagt 366  Q
    ||||||| ||||||||||||  |||| |||||||||||||||||||||||||||||||||    
T  5886649 caataacaatttcaatgccaagttcccacccaatcaaaatccaattatacctgaaatagt 5886590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 7 - 351
Target Start/End: Complemental strand, 5983911 - 5983558
Alignment:
Q  7 tttggacagatgggcacaaattgccaagtacttgccaggaagaacggataatgaggtgaaaaacttttggaattcaagcataaagaaaaaactcctttct 106  Q
    ||||||||||||||| || ||||| ||  |||| || |||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| |||||| |    
T  5983911 tttggacagatgggctcagattgcaaaacacttacctggaagaacagataatgaggtgaaaaacttttggaattcaaccataaagaagaaaatcctttgt 5983812  T
Q  107 gatgatattgttccatccttcaccccattttatgatattcacctcccctac---agtgctggttttaaggaaagtatttttcctttaaatgcaaacccta 203  Q
     |||||||| ||||||| |||||| |||||| ||| ||||||  |||||||   | |  |||||  | |||||     || |||||||||||||||||||    
T  5983811 catgatattattccatctttcaccacattttctgaaattcacaccccctaccataatattggttcaatggaaaactcattccctttaaatgcaaacccta 5983712  T
Q  204 atgtgatgctaaacttcaatc---ctcaccatcaagatcacctatacctttcaaactcgtctccaaatatgcaatg---ttttcaccaaactggtacaat 297  Q
    ||||||| || ||||||||||    | ||||||||||| ||||||||| ||||| ||| ||||||||| | ||| |   |||||| |||| || |||||     
T  5983711 atgtgatcctcaacttcaatcattataaccatcaagattacctataccattcaacctcatctccaaatctacaaggtaattttcatcaaattgatacaaa 5983612  T
Q  298 ggtagacatcaataaccatttcaatgccagattcctacccaatcaaaatccaat 351  Q
    ||||||||||||| ||||||  |||||||  ||||  | || ||||||||||||    
T  5983611 ggtagacatcaatgaccattataatgccaatttccctcacattcaaaatccaat 5983558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 7 - 142
Target Start/End: Complemental strand, 5948298 - 5948163
Alignment:
Q  7 tttggacagatgggcacaaattgccaagtacttgccaggaagaacggataatgaggtgaaaaacttttggaattcaagcataaagaaaaaactcctttct 106  Q
    ||||||||||||||| |||||||| ||| |||| || |||||||| ||||||||| | ||||||||||||||||||| ||||||||||||| ||||||||    
T  5948298 tttggacagatgggctcaaattgcaaagcacttacctggaagaacagataatgagataaaaaacttttggaattcaaccataaagaaaaaaatcctttct 5948199  T
Q  107 gatgatattgttccatccttcaccccattttatgat 142  Q
     ||| |||| ||||||| |||||| |||||| ||||    
T  5948198 catggtattattccatctttcaccacattttctgat 5948163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 4 - 351
Target Start/End: Complemental strand, 5920730 - 5920371
Alignment:
Q  4 ttgtttggacagatgggcacaaattgccaagtacttgccaggaagaacggataatgaggtgaaaaacttttggaattcaagcataaagaaaaaactcctt 103  Q
    |||||||||||| ||||| || ||||| ||| |||| || |||||||| ||||||||||||||||||||||||||||||| ||| ||||| ||| ||| |    
T  5920730 ttgtttggacaggtgggctcagattgcgaagcacttacctggaagaacagataatgaggtgaaaaacttttggaattcaaccatgaagaagaaaatccct 5920631  T
Q  104 tctgatgatattgttccatccttcaccccattttatgatattcacctcccctac------agtgctggttttaaggaaagtatttttcctttaaatgcaa 197  Q
    ||| ||| |||  ||||||| ||| || |||||| | ||||||||  |||||||      | |  ||||| || ||||||| |  | ||| |||||||||    
T  5920630 tctcatggtatctttccatctttccccacattttctaatattcacaccccctacaataaaaatattggttctatggaaagtttactccctataaatgcaa 5920531  T
Q  198 accctaatgtgatgctaaacttcaatcctcaccatcaagatcacctatacctttcaaactcgtctccaaatatgcaatg---ttttcaccaaactggtac 294  Q
    ||||||||||||| ||||| ||||| | ||||||| ||||||| |||| |  | ||| ||| ||||||||| | ||| |   ||||||||||| || |||    
T  5920530 accctaatgtgattctaaatttcaaccatcaccatgaagatcaactatgctatccaacctcatctccaaatctacaaggtaattttcaccaaattgatac 5920431  T
Q  295 aatggtagac---atcaataaccatttcaatgccagattcctacccaatcaaaatccaat 351  Q
    || |||||||   |||||||||||||  |||| ||  ||||| | || ||||||||||||    
T  5920430 aaaggtagacatgatcaataaccattataatggcaatttccttcacattcaaaatccaat 5920371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 7 - 348
Target Start/End: Complemental strand, 5959393 - 5959043
Alignment:
Q  7 tttggacagatgggcacaaattgccaagtacttgccaggaagaacggataatgaggtgaaaaacttttggaattcaagcataaagaaaaaactcctttct 106  Q
    ||||||||||||||| || ||||| ||  ||||  | |||||||| ||||||||||||||||||||||||||||| | ||||||||| ||| | | ||||    
T  5959393 tttggacagatgggctcagattgcaaaacacttaactggaagaacagataatgaggtgaaaaacttttggaattctaccataaagaagaaaattcattct 5959294  T
Q  107 gatgatattgttccatccttcaccccattttatgatattcacctcccctac---agtgctggttttaaggaaagtatttttcctttaaatgcaaacccta 203  Q
     | ||||||  |||||| |||| | |||||| |||| |||||  ||| |||   | | ||||||  | |||||     || ||||||||||||||||| |    
T  5959293 cacgatattactccatctttcatcacattttctgatgttcacaccccataccataatactggttcaatggaaaactccttccctttaaatgcaaacccga 5959194  T
Q  204 atgtgatgctaaacttcaatcctca---ccatcaagatcacctatacctttcaaactcgtctccaaatatgcaatg---ttttcaccaaactggtacaat 297  Q
    ||||||  || |||||||||| |||   |||||||||| ||||||||| ||||| ||| |||||||||  |||| |   |||||| |||| || |||||     
T  5959193 atgtgaccctcaacttcaatcatcatcaccatcaagattacctataccattcaacctcatctccaaatcagcaaagtaattttcatcaaattgatacaaa 5959094  T
Q  298 ggtagacatcaataaccatttcaatgccagattcctacccaatcaaaatcc 348  Q
    ||||||||||||| ||||||  |||||||  ||||| | || |||||||||    
T  5959093 ggtagacatcaatgaccattataatgccaatttccttcacattcaaaatcc 5959043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 185 - 351
Target Start/End: Complemental strand, 5948129 - 5947957
Alignment:
Q  185 cctttaaatgcaaaccctaatgtgatgctaaacttcaatc---ctcaccatcaagatcacctatacctttcaaactcgtctccaaatatgcaatg---tt 278  Q
    |||||||||||||||||||||||||| || ||||||||||    | ||||||||||| ||||||||| ||||| ||| ||||||||| | ||| |   ||    
T  5948129 cctttaaatgcaaaccctaatgtgatcctcaacttcaatcattataaccatcaagattacctataccattcaacctcatctccaaatctacaaggtaatt 5948030  T
Q  279 ttcaccaaactggtacaatggtagacatcaataaccatttcaatgccagattcctacccaatcaaaatccaat 351  Q
    |||| |||| || ||||| ||||||||||||| ||||||  |||||||  ||||  | || ||||||||||||    
T  5948029 ttcatcaaattgatacaaaggtagacatcaatgaccattataatgccaatttccctctcattcaaaatccaat 5947957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 42788835 - 42788723
Alignment:
Q  8 ttggacagatgggcacaaattgccaagtacttgccaggaagaacggataatgaggtgaaaaacttttggaattcaagcataaagaaaaaactcctttctg 107  Q
    |||||||| ||||| || || || ||| | || ||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| |||||      
T  42788835 ttggacaggtgggctcagatagcaaagcatttaccaggaagaacagataatgaggtgaagaacttttggaattcaagcataaagaagaaactactttcac 42788736  T
Q  108 atgatattgttcc 120  Q
    ||||| |||||||    
T  42788735 atgattttgttcc 42788723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 34626488 - 34626445
Alignment:
Q  41 ccaggaagaacggataatgaggtgaaaaacttttggaattcaag 84  Q
    ||||| ||||||||||||||| | ||||||||||||||||||||    
T  34626488 ccaggtagaacggataatgagattaaaaacttttggaattcaag 34626445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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