View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1032_high_4 (Length: 287)
Name: NF1032_high_4
Description: NF1032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1032_high_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 66 - 287
Target Start/End: Original strand, 44476363 - 44476584
Alignment:
| Q |
66 |
caagggacacactatgaatctttgtatcatcggaaattgttgatgaaaaatcattaatcaccgtttgatcagaagatgcagtaactaaaccatctaaaca |
165 |
Q |
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| T |
44476363 |
caagggacacactatgaatctttgtatcatcggaaattgttgatgaaaaatcattaatcaccgtttgatcagaagatgcagtaactaaaccatctaaaca |
44476462 |
T |
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| Q |
166 |
agtttgttggtttgttaaaacagcactaagcaaggtttgtaattcttcgccttgagaaatgggaagaacattgctagttttattagcagtttgataagtg |
265 |
Q |
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| T |
44476463 |
agtttgttggtttgttaaaacagcactaagcaaggtttgtaattcttcgccttgagaaatgggaagaacattgctagttttattagcagtttgatgagtg |
44476562 |
T |
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| Q |
266 |
tttgataggaattcgaaatttt |
287 |
Q |
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| T |
44476563 |
tttgataagaattcgaaatttt |
44476584 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 37166625 - 37166677
Alignment:
| Q |
152 |
aaaccatctaaacaagtttgttggtttgttaaaacagcactaagcaaggtttg |
204 |
Q |
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| T |
37166625 |
aaaccatctaaacatgtttgatgattagttaaaacagcactaagcaatgtttg |
37166677 |
T |
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