View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1032_low_1 (Length: 594)
Name: NF1032_low_1
Description: NF1032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1032_low_1 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 362 - 594
Target Start/End: Complemental strand, 25870419 - 25870175
Alignment:
| Q |
362 |
tcattgggtgatggttgtcatcgtgagttgtattggcggcgaaacagcccttgacattcttgtgactagccctgtgtcctccaagtgcctgatgggatcc |
461 |
Q |
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| T |
25870419 |
tcattgggtgatggttgtcatcgtgagttgtattggcggcgaaacagcccttgacattcttgtgactagccctgtgtcctccaagtgcctgatgggatcc |
25870320 |
T |
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| Q |
462 |
aaatactttgttgcaacacgaacacacaaactcatcctcatcatccaccaccgttgttgttgttttcttgttcttgt------------tctttggattt |
549 |
Q |
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| T |
25870319 |
aaatactttgttgcaacacgaacacacaaactgatcctcatcatccaccaccgttgttgttgttttcttgttcttgttcttgttcttgttctttggattt |
25870220 |
T |
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| Q |
550 |
gaattggcaagtaaaagcaaagaagcagcaccttcctgttcttct |
594 |
Q |
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| T |
25870219 |
gaattagcaagtaaaagcaaagaagcagcaccttcctgttcttct |
25870175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 201 - 362
Target Start/End: Complemental strand, 25870613 - 25870455
Alignment:
| Q |
201 |
tggaaaagggaaattcaaatcaaatggtagtgttggtgtcgtcgtgggttcccctttatcccaatgacacctcttatgaccaccgagtgcttgtccagtg |
300 |
Q |
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| T |
25870613 |
tggaaaagggaaattcaaatcaaatggtagtgttggtgtcgt---gggttcccctttatcccaatgacacctcttatgaccaccgagtgcttgtccagtg |
25870517 |
T |
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| Q |
301 |
ctaaataccctcaaacatatgctacacttgtgtccgatgatgcagtcattattattattatt |
362 |
Q |
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| T |
25870516 |
ctaaataccctcaaacatatgctacacttgtgtccgatgatgcagtcattattattattatt |
25870455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 399 - 594
Target Start/End: Complemental strand, 43383652 - 43383451
Alignment:
| Q |
399 |
ggcgaaacagcccttgacattcttgtgactagccctgtgtcctccaagtgcctgatgggatccaaatactttgttgcaacacgaacacacaaactcatcc |
498 |
Q |
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| T |
43383652 |
ggcgaaacagcccttgacattcttgtgactagccctgtgtcctccaagtgcctgatgggatccaaatactttgttacaacacgaacacacaaactgatca |
43383553 |
T |
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| Q |
499 |
tcatcatccaccaccgttgttgttg--ttttctt----gttcttgttctttggatttgaattggcaagtaaaagcaaagaagcagcaccttcctgttctt |
592 |
Q |
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| T |
43383552 |
tcctcatcgaccaccgttgttgttgcttttgcttttgctttcttgttctttggatttgaattagaaagtaagagcaaagaagcagcaccttcctgttctt |
43383453 |
T |
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| Q |
593 |
ct |
594 |
Q |
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|| |
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| T |
43383452 |
ct |
43383451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 201 - 346
Target Start/End: Complemental strand, 43383943 - 43383789
Alignment:
| Q |
201 |
tggaaaagggaaattcaaatcaaatggtagtgttggtgtcgtcgt---------gggttcccctttatcccaatgacacctcttatgaccaccgagtgct |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||| | || ||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
43383943 |
tggaaaagggaaattcaaatcaaatggtagtgttggtgttggtgttggtgttttgggttccactttttcccaatgacacctcttatgaccaccgagtgct |
43383844 |
T |
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| Q |
292 |
tgtccagtgctaaataccctcaaacatatgctacacttgtgtccgatgatgcagt |
346 |
Q |
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| T |
43383843 |
tgtccagtgctaaataccctcaaacatatgctacacttgtgtccgatgatgcagt |
43383789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 25870743 - 25870699
Alignment:
| Q |
76 |
ggggtaattacaattagggttgcaaatcaaacatacatgtgcact |
120 |
Q |
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| T |
25870743 |
ggggtaattacaactagggttgcaaatcaaacatacatgagcact |
25870699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 149 - 177
Target Start/End: Complemental strand, 43384012 - 43383984
Alignment:
| Q |
149 |
ttaaagtcccaacctcaaatcaagagtga |
177 |
Q |
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| T |
43384012 |
ttaaagtcccaacctcaaatcaagagtga |
43383984 |
T |
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