View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10330_high_1 (Length: 687)

Name: NF10330_high_1
Description: NF10330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10330_high_1
NF10330_high_1
[»] chr1 (34 HSPs)
chr1 (18-679)||(47254564-47255225)
chr1 (18-111)||(19752939-19753032)
chr1 (18-111)||(13548792-13548888)
chr1 (18-111)||(13546886-13546981)
chr1 (18-106)||(19754749-19754837)
chr1 (31-89)||(42297790-42297848)
chr1 (31-93)||(37876573-37876637)
chr1 (31-83)||(29136544-29136596)
chr1 (31-109)||(37032860-37032940)
chr1 (18-62)||(194801-194845)
chr1 (56-111)||(833970-834024)
chr1 (56-111)||(8550584-8550638)
chr1 (60-111)||(28220026-28220077)
chr1 (56-111)||(28223221-28223276)
chr1 (56-111)||(49918664-49918718)
chr1 (66-111)||(4552448-4552493)
chr1 (59-115)||(1833825-1833880)
chr1 (47-111)||(11349013-11349080)
chr1 (59-111)||(37503362-37503413)
chr1 (56-111)||(196710-196764)
chr1 (56-111)||(13137780-13137835)
chr1 (56-111)||(37559664-37559719)
chr1 (56-111)||(40122001-40122055)
chr1 (56-111)||(45644158-45644212)
chr1 (56-88)||(20762982-20763014)
chr1 (59-111)||(28265359-28265410)
chr1 (56-111)||(10925536-10925590)
chr1 (59-110)||(30476247-30476298)
chr1 (56-109)||(13659153-13659205)
chr1 (59-111)||(3846921-3846972)
chr1 (59-111)||(31659555-31659606)
chr1 (59-111)||(44455477-44455528)
chr1 (56-88)||(50167002-50167034)
chr1 (56-88)||(50169037-50169069)
[»] scaffold0466 (1 HSPs)
scaffold0466 (18-97)||(7608-7687)
[»] chr4 (31 HSPs)
chr4 (18-111)||(41639707-41639801)
chr4 (31-111)||(50262487-50262567)
chr4 (31-98)||(2210015-2210082)
chr4 (31-120)||(40632742-40632834)
chr4 (31-111)||(6656222-6656305)
chr4 (56-111)||(26175436-26175491)
chr4 (35-97)||(21688543-21688605)
chr4 (31-111)||(50673638-50673719)
chr4 (59-111)||(12739353-12739405)
chr4 (57-113)||(37740940-37740996)
chr4 (56-111)||(12743728-12743783)
chr4 (56-111)||(45686987-45687041)
chr4 (56-111)||(48893443-48893497)
chr4 (56-109)||(52467159-52467212)
chr4 (56-109)||(56178438-56178490)
chr4 (56-111)||(9927258-9927313)
chr4 (64-111)||(36994851-36994898)
chr4 (56-111)||(46147195-46147250)
chr4 (56-114)||(54199705-54199762)
chr4 (18-64)||(54881583-54881629)
chr4 (56-88)||(29999651-29999683)
chr4 (59-111)||(36463196-36463247)
chr4 (56-88)||(48143362-48143394)
chr4 (18-65)||(35662720-35662767)
chr4 (60-111)||(52082463-52082513)
chr4 (60-111)||(52095162-52095212)
chr4 (59-88)||(5369904-5369933)
chr4 (56-111)||(31474460-31474512)
chr4 (56-88)||(29254806-29254838)
chr4 (56-88)||(34570236-34570268)
chr4 (60-88)||(47038238-47038266)
[»] chr7 (32 HSPs)
chr7 (18-109)||(2360774-2360865)
chr7 (18-111)||(22270228-22270321)
chr7 (18-111)||(30814677-30814770)
chr7 (31-111)||(4510339-4510419)
chr7 (31-111)||(4512181-4512261)
chr7 (18-94)||(6359762-6359838)
chr7 (18-111)||(32357848-32357943)
chr7 (46-111)||(6430431-6430496)
chr7 (31-109)||(4508499-4508577)
chr7 (56-113)||(19502492-19502549)
chr7 (56-111)||(14069633-14069688)
chr7 (56-111)||(14379661-14379716)
chr7 (56-111)||(23555355-23555410)
chr7 (56-113)||(31732766-31732823)
chr7 (59-111)||(18126963-18127015)
chr7 (56-112)||(41317237-41317293)
chr7 (56-111)||(4586475-4586530)
chr7 (56-111)||(38671025-38671079)
chr7 (56-111)||(41648814-41648868)
chr7 (56-111)||(47675936-47675991)
chr7 (59-111)||(26417633-26417685)
chr7 (59-107)||(43864561-43864609)
chr7 (56-111)||(1113966-1114021)
chr7 (56-111)||(36146212-36146266)
chr7 (56-110)||(48489745-48489798)
chr7 (56-88)||(4179087-4179119)
chr7 (56-88)||(29991367-29991399)
chr7 (56-111)||(27348131-27348185)
chr7 (56-114)||(35854230-35854288)
chr7 (60-111)||(47673744-47673795)
chr7 (31-72)||(34310544-34310585)
chr7 (56-88)||(25616169-25616201)
[»] chr6 (21 HSPs)
chr6 (18-111)||(602903-602996)
chr6 (31-111)||(17758321-17758402)
chr6 (31-111)||(21589227-21589308)
chr6 (31-111)||(17763288-17763369)
chr6 (31-106)||(22424620-22424695)
chr6 (31-111)||(5043925-5044006)
chr6 (31-96)||(26829925-26829992)
chr6 (39-88)||(3808518-3808567)
chr6 (56-111)||(26954091-26954145)
chr6 (58-111)||(22963508-22963561)
chr6 (58-111)||(23824832-23824885)
chr6 (56-88)||(5408892-5408924)
chr6 (56-88)||(5413217-5413249)
chr6 (56-111)||(14521478-14521532)
chr6 (56-111)||(28137211-28137265)
chr6 (59-88)||(5406025-5406054)
chr6 (59-88)||(5410350-5410379)
chr6 (59-108)||(33211005-33211053)
chr6 (56-88)||(2171349-2171381)
chr6 (56-84)||(9182857-9182885)
chr6 (56-84)||(33160177-33160205)
[»] chr3 (38 HSPs)
chr3 (18-111)||(40913553-40913646)
chr3 (18-108)||(34491467-34491557)
chr3 (39-111)||(6095390-6095463)
chr3 (18-111)||(31340018-31340110)
chr3 (31-111)||(43403530-43403611)
chr3 (18-88)||(47304537-47304607)
chr3 (31-98)||(43401601-43401668)
chr3 (56-111)||(29196189-29196244)
chr3 (31-111)||(49199254-49199336)
chr3 (18-66)||(46173640-46173688)
chr3 (56-111)||(29813375-29813430)
chr3 (31-111)||(30236423-30236504)
chr3 (56-111)||(761158-761211)
chr3 (31-111)||(54594003-54594086)
chr3 (31-111)||(55301758-55301841)
chr3 (56-111)||(22834807-22834861)
chr3 (59-111)||(5236257-5236308)
chr3 (56-111)||(9666270-9666324)
chr3 (56-114)||(29682670-29682729)
chr3 (56-111)||(39153164-39153219)
chr3 (56-111)||(40734811-40734865)
chr3 (65-111)||(4160059-4160105)
chr3 (59-116)||(23391707-23391764)
chr3 (56-88)||(9635946-9635978)
chr3 (60-111)||(23410131-23410182)
chr3 (56-111)||(29811182-29811237)
chr3 (56-111)||(31314754-31314808)
chr3 (56-115)||(37408773-37408831)
chr3 (18-64)||(41819363-41819410)
chr3 (56-111)||(51399128-51399182)
chr3 (54-112)||(4570210-4570273)
chr3 (56-86)||(7762580-7762610)
chr3 (31-69)||(50432478-50432516)
chr3 (56-112)||(2074882-2074936)
chr3 (56-88)||(5257966-5257998)
chr3 (56-88)||(19683710-19683742)
chr3 (56-111)||(27305519-27305571)
chr3 (56-88)||(40735696-40735728)
[»] chr5 (26 HSPs)
chr5 (37-113)||(38747279-38747355)
chr5 (18-111)||(40147517-40147610)
chr5 (18-98)||(28278571-28278651)
chr5 (31-97)||(5058342-5058408)
chr5 (18-94)||(27015802-27015878)
chr5 (18-111)||(40751256-40751351)
chr5 (56-109)||(538334-538387)
chr5 (59-111)||(13488517-13488569)
chr5 (56-111)||(534072-534127)
chr5 (56-111)||(3075549-3075604)
chr5 (56-111)||(30682722-30682777)
chr5 (18-111)||(40763261-40763356)
chr5 (59-115)||(32637140-32637196)
chr5 (56-112)||(33831992-33832047)
chr5 (56-112)||(39468347-39468403)
chr5 (56-111)||(5887235-5887289)
chr5 (56-111)||(28750455-28750510)
chr5 (56-111)||(31183287-31183341)
chr5 (56-111)||(42426035-42426090)
chr5 (56-97)||(42428244-42428285)
chr5 (56-111)||(16649635-16649689)
chr5 (56-87)||(36073866-36073897)
chr5 (56-88)||(16409793-16409825)
chr5 (56-111)||(19806676-19806729)
chr5 (56-88)||(25413074-25413106)
chr5 (56-88)||(30182902-30182934)
[»] chr2 (21 HSPs)
chr2 (31-110)||(45727224-45727305)
chr2 (21-111)||(35446677-35446769)
chr2 (56-111)||(29868182-29868237)
chr2 (56-118)||(2334211-2334272)
chr2 (56-111)||(11690801-11690856)
chr2 (56-111)||(723547-723601)
chr2 (31-95)||(1631538-1631604)
chr2 (56-111)||(34139573-34139627)
chr2 (56-111)||(36987875-36987929)
chr2 (56-111)||(42362659-42362713)
chr2 (56-113)||(11151393-11151450)
chr2 (56-111)||(6594804-6594858)
chr2 (56-111)||(14633628-14633682)
chr2 (56-111)||(24885899-24885953)
chr2 (56-111)||(33162254-33162308)
chr2 (56-111)||(36773872-36773926)
chr2 (56-88)||(5723078-5723110)
chr2 (56-116)||(17057164-17057223)
chr2 (56-116)||(17085147-17085206)
chr2 (56-88)||(36205487-36205519)
chr2 (63-111)||(36317813-36317861)
[»] chr8 (22 HSPs)
chr8 (31-97)||(42434794-42434862)
chr8 (56-107)||(3303474-3303525)
chr8 (56-111)||(4743027-4743082)
chr8 (56-111)||(15213100-15213155)
chr8 (56-111)||(30143654-30143708)
chr8 (56-111)||(5689581-5689635)
chr8 (56-109)||(41366420-41366472)
chr8 (56-116)||(6599279-6599338)
chr8 (56-116)||(6674732-6674791)
chr8 (56-111)||(12702431-12702485)
chr8 (56-111)||(17982967-17983021)
chr8 (56-111)||(4731972-4732026)
chr8 (56-111)||(18105876-18105930)
chr8 (56-87)||(34254154-34254185)
chr8 (56-87)||(34256330-34256361)
chr8 (60-111)||(4283819-4283872)
chr8 (56-115)||(4734020-4734079)
chr8 (55-115)||(8965488-8965546)
chr8 (56-88)||(19945181-19945213)
chr8 (56-88)||(31218571-31218603)
chr8 (56-88)||(42498509-42498541)
chr8 (56-88)||(44304169-44304201)
[»] scaffold0176 (1 HSPs)
scaffold0176 (39-98)||(17807-17866)
[»] scaffold0066 (1 HSPs)
scaffold0066 (56-111)||(20216-20269)
[»] scaffold1668 (1 HSPs)
scaffold1668 (56-111)||(1301-1356)
[»] scaffold0006 (1 HSPs)
scaffold0006 (56-109)||(148914-148966)
[»] scaffold0286 (1 HSPs)
scaffold0286 (56-88)||(11880-11912)
[»] scaffold0002 (1 HSPs)
scaffold0002 (56-88)||(434848-434880)


Alignment Details
Target: chr1 (Bit Score: 571; Significance: 0; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 18 - 679
Target Start/End: Complemental strand, 47255225 - 47254564
Alignment:
Q  18 gcttgtggtttactttggttgttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacagttata 117  Q
    |||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||  | ||||||||||||||||||    
T  47255225 gcttatggtttactttggttgttggttgccattgatacctgctccacacatcatagtttatattggtgtgaaatttgaacc-gaattcacaacagttata 47255127  T
Q  118 aagcagtaagagataggtagagttaaaacaaagtcctaaaacataaatttgaaatgtcaaaagaaaatagtttggttaaaaatatataacaaacattgaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47255126 aagcagtaagagataggtagagttaaaacaaagtcctaaaacataaatttgaaatgtcaaaagaaaatagtttggttaaaaatatataacaaacattgaa 47255027  T
Q  218 tcctctcaactgcttaagcttaagtagtnnnnnnnnnn--gactacagataaagtcaattttattttaacattatggagatcaagtgaatgtatatatgc 315  Q
    ||||||||||||||||||||||||||||            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47255026 tcctctcaactgcttaagcttaagtagtaaaaaaaaaaaagactacagacaaagtcaattttattttaacattatggagatcaagtgaatgtatatatgc 47254927  T
Q  316 ctttctgtctaaagatcgcttagaaaggattcaatggtctgtgcattaaagaagtacacacatcacaaaagacaaggagattacgttatattaaaccata 415  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47254926 ctttctgtctaa-gatcgcttagaaagtattcaatggtctgtgcattaaagaagtacacacatcacaaaagacaaggagattacgttatattaaaccata 47254828  T
Q  416 attaacaaataagcttaattaggattccctttctcttgcttagtcaaaggacaggaataagattgttaatatgactccccctgcatgcagggatttaaca 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47254827 attaacaaataagcttaattaggattccctttctcttgcttagtcaaaggacaggaataagattgttaatatgactccccctgcatgcagggatttaaca 47254728  T
Q  516 tggagaagtcctaagcatgtggccacatgatcataatttctaaccatgtgacaactgaggttaaagattggagatatttatgaaatgaccaaaacatcct 615  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47254727 tggagaagtcctaagcatgtggccacatgaccataatttctaaccatgtgacaactgaggttaaagattggagatatttatgaaatgaccaaaacatcct 47254628  T
Q  616 ctatagaagttggtcacattgttctaaacaaagaaaaaccagttgtgtgtatcatgttcatctc 679  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47254627 ctatagaagttggtcacattgttctaaacaaagaaaaaccagttgtgtgtatcatgttcatctc 47254564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 19752939 - 19753032
Alignment:
Q  18 gcttgtggtttactttggttgttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||| | ||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19752939 gcttgtggttaattttggttgttggttgccattgatacttgcttcgcacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 19753032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 13548888 - 13548792
Alignment:
Q  18 gcttgtggtttactttggttgttggttgccattggtacttgctccacacatc--atagtttgtattggtgtgaaatttgag-tctgaattcacaaca 111  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||  ||||||||||||||||||||||||||| || ||||||||||||    
T  13548888 gcttgtggtttactttggttgttggttgtcattgatacttgctccacacatcatatagtttgtattggtgtgaaatttgagttcagaattcacaaca 13548792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 13546981 - 13546886
Alignment:
Q  18 gcttgtggtttactttggttgttggttgccattggtacttgctccacacat--catagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||   |||||||||||||||| |||||||||| | ||||||||||||    
T  13546981 gcttgtggtttactttggttgttggttgccattgatacttgctccacacattatatagtttgtattggtgagaaatttgagaccgaattcacaaca 13546886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 19754749 - 19754837
Alignment:
Q  18 gcttgtggtttactttggttgttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattca 106  Q
    |||||||||| | ||| ||||  ||||| ||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  19754749 gcttgtggttaattttagttggaggttgtcattgatacttgctccacacatcatagtttctattggtgtgaaatttgaatctgaattca 19754837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 31 - 89
Target Start/End: Complemental strand, 42297848 - 42297790
Alignment:
Q  31 tttggttgttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaa 89  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||    
T  42297848 tttggttgttggttgccattgatactttctccacacatcatagtttggattggtgtgaa 42297790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 37876637 - 37876573
Alignment:
Q  31 tttggttgttggttgccattggtacttgctccacacatc--atagtttgtattggtgtgaaattt 93  Q
    ||||||| ||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||    
T  37876637 tttggttattggttgccattgatacttgctccacacatcatatagtttgtattggtgtgaaattt 37876573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 29136544 - 29136596
Alignment:
Q  31 tttggttgttggttgccattggtacttgctccacacatcatagtttgtattgg 83  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  29136544 tttggttattggttgtcattggtacttgctccacacatcatagtttgtattgg 29136596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 37032940 - 37032860
Alignment:
Q  31 tttggttgttggttgccattggtacttgctccacacatc--atagtttgtattggtgtgaaatttgagtctgaattcacaa 109  Q
    ||||||| ||||||||||||| || ||||||||||||||  ||||||||||||| |||||||||||||   ||||||||||    
T  37032940 tttggttattggttgccattgatatttgctccacacatcatatagtttgtattgttgtgaaatttgagatcgaattcacaa 37032860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 194801 - 194845
Alignment:
Q  18 gcttgtggtttactttggttgttggttgccattggtacttgctcc 62  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  194801 gcttgtggtttactttggttgttggttgccattgatacttgctcc 194845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 834024 - 833970
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  834024 ttgctccacacatcatagtttgtattggtgtg-attttgagtccgaattcacaaca 833970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 8550638 - 8550584
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  8550638 ttgctccacacatcatagtttgtattggtgtg-attttgagtccgaattcacaaca 8550584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 28220077 - 28220026
Alignment:
Q  60 tccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  28220077 tccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 28220026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 28223276 - 28223221
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||||||||||||||||||||||||| |||  |||||||| ||||||||||||    
T  28223276 ttgctccacacatcatagtttgtattggtctgagttttgagtccgaattcacaaca 28223221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 49918664 - 49918718
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||| ||||||    
T  49918664 ttgctccacacatcatagtttgtattggtgtg-attttgagtctgaatttacaaca 49918718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 4552493 - 4552448
Alignment:
Q  66 catcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||    
T  4552493 catcatagtttgtattggtgtgaaatttgagtccgaattcgcaaca 4552448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 1833825 - 1833880
Alignment:
Q  59 ctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacagtta 115  Q
    ||||||| |||||||||||||||||||||| | ||||||| ||||||||||||||||    
T  1833825 ctccacagatcatagtttgtattggtgtgata-ttgagtccgaattcacaacagtta 1833880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 11349013 - 11349080
Alignment:
Q  47 cattggtacttgctccacacatcata--gtttgtattggtgtgaaatttgagt-ctgaattcacaaca 111  Q
    ||||| ||||||||||||||||||||  |||||||||||||| |||||||||| | ||||||||||||    
T  11349013 cattgatacttgctccacacatcatatagtttgtattggtgtaaaatttgagtcccgaattcacaaca 11349080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 37503413 - 37503362
Alignment:
Q  59 ctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  37503413 ctccacacatcatagtttgtattggtgtg-attttgagtccgaattcacaaca 37503362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 196764 - 196710
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||||||||||||| |||||||||||||| |||||||||  ||||||||||||    
T  196764 ttgctccacacatcataatttgtattggtgtg-aatttgagtacgaattcacaaca 196710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 13137835 - 13137780
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||||||||||||| |||||||||||||||  |||||||| ||||| ||||||    
T  13137835 ttgctccacacatcataatttgtattggtgtgagttttgagtccgaatttacaaca 13137780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 37559719 - 37559664
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||| |||||||||||| |||||||||||  |||||||| ||||||||||||    
T  37559719 ttgctccagacatcatagtttatattggtgtgagttttgagtccgaattcacaaca 37559664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 40122055 - 40122001
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||||| |||||||||||||||||||||| | |||||||| ||||||||||||    
T  40122055 ttgctccacgcatcatagtttgtattggtgtg-attttgagtccgaattcacaaca 40122001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 45644212 - 45644158
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||| ||||| | |||||||| ||||||||||||    
T  45644212 ttgctccacacatcatagtttgtatttgtgtg-attttgagtccgaattcacaaca 45644158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 20762982 - 20763014
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtga 88  Q
    |||||||||||||||||||||||||||||||||    
T  20762982 ttgctccacacatcatagtttgtattggtgtga 20763014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 28265410 - 28265359
Alignment:
Q  59 ctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||||||||||||||||||||||||| | |||||||| |||||| |||||    
T  28265410 ctccacacatcatagtttgtattggtgtg-attttgagtccgaattcccaaca 28265359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 10925536 - 10925590
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||| |||||||||||||| |||| | |||||||| ||||||||||||    
T  10925536 ttgctccacacaacatagtttgtattgttgtg-attttgagtccgaattcacaaca 10925590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 30476298 - 30476247
Alignment:
Q  59 ctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaac 110  Q
    |||||||||| |||||||||||||||||||  |||||||  |||||||||||    
T  30476298 ctccacacattatagtttgtattggtgtgagttttgagttcgaattcacaac 30476247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 13659205 - 13659153
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaa 109  Q
    ||||||||||||| ||||||||||||| |||| | |||||||| ||||||||||    
T  13659205 ttgctccacacattatagtttgtattgatgtg-attttgagtccgaattcacaa 13659153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 3846972 - 3846921
Alignment:
Q  59 ctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||||||||||||||||||| || || | |||||||| ||||||||||||    
T  3846972 ctccacacatcatagtttgtattagtatg-attttgagtccgaattcacaaca 3846921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 31659555 - 31659606
Alignment:
Q  59 ctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||| ||| |||||||||| | |||||||| ||||||||||||    
T  31659555 ctccacacatcatattttatattggtgtg-attttgagtccgaattcacaaca 31659606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 44455477 - 44455528
Alignment:
Q  59 ctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||| ||||||||||||||||||||| | |||||||  ||||||||||||    
T  44455477 ctccacatatcatagtttgtattggtgtg-attttgagtacgaattcacaaca 44455528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 50167034 - 50167002
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtga 88  Q
    ||||||||||||||||||||||| |||||||||    
T  50167034 ttgctccacacatcatagtttgttttggtgtga 50167002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 50169069 - 50169037
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtga 88  Q
    ||||| |||||||||||||||||||||||||||    
T  50169069 ttgcttcacacatcatagtttgtattggtgtga 50169037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 76; Significance: 9e-35; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 7608 - 7687
Alignment:
Q  18 gcttgtggtttactttggttgttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttgagt 97  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7608 gcttgtggtttactttggttgttggttgccattgatacttgctccacacatcatagtttgtattggtgtgaaatttgagt 7687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 41639707 - 41639801
Alignment:
Q  18 gcttgtggtttac-tttggttgttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  41639707 gcttgtggtttacatttggttattggttgccattgatacttgctccacacatcatagtttgtattgatgtgaaatttgagtctgaattcacaaca 41639801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 50262567 - 50262487
Alignment:
Q  31 tttggttgttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50262567 tttgcttgttggttgtcattgatacttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 50262487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 2210015 - 2210082
Alignment:
Q  31 tttggttgttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttgagtc 98  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2210015 tttggttattggttgccattgatacttgctccacacatcatagtttgtattggtgtgaaatttgagtc 2210082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 40632742 - 40632834
Alignment:
Q  31 tttggttgttggttgccattggtacttgctccacacatc--atagtttgtattggtgtgaaatttgagt-ctgaattcacaacagttataaag 120  Q
    ||||||| ||||||||||||| ||||||||| |||||||  |||||||||||||||||| ||||||||| | |||||||||||| | ||||||    
T  40632742 tttggttattggttgccattgatacttgctctacacatcatatagtttgtattggtgtgtaatttgagtccggaattcacaacactaataaag 40632834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 6656222 - 6656305
Alignment:
Q  31 tttggttgttggttgccattggtacttgctccacacatcatagtttg--tattggtgtgaaatttgagt-ctgaattcacaaca 111  Q
    |||||||||||| || ||||| |||||||||||||||||||||||||  ||||| |||||||||||||| | ||||||||||||    
T  6656222 tttggttgttggatgtcattgatacttgctccacacatcatagtttgtttattgatgtgaaatttgagtccggaattcacaaca 6656305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 26175491 - 26175436
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  26175491 ttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 26175436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 21688543 - 21688605
Alignment:
Q  35 gttgttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttgagt 97  Q
    ||||||| ||| ||||| ||||||||||||||||||||||||||||| |||| ||||||||||    
T  21688543 gttgttgattgtcattgatacttgctccacacatcatagtttgtattagtgtaaaatttgagt 21688605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 50673719 - 50673638
Alignment:
Q  31 tttggttgttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttgagt-ctgaattcacaaca 111  Q
    ||||||| ||||||| ||||| |||||||||||||||||||| ||||||||  |||| ||||||||| | ||||||||||||    
T  50673719 tttggttattggttgacattgatacttgctccacacatcataatttgtattaatgtgtaatttgagtccggaattcacaaca 50673638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 12739405 - 12739353
Alignment:
Q  59 ctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  12739405 ctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 12739353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 37740940 - 37740996
Alignment:
Q  57 tgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacagt 113  Q
    ||||||||||||||||||||||||||||||||  |||||||| ||||| ||||||||    
T  37740940 tgctccacacatcatagtttgtattggtgtgagttttgagtccgaatttacaacagt 37740996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 12743783 - 12743728
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||| ||||||||||||||||||||  |||||||| ||||||||||||    
T  12743783 ttgctccacacaacatagtttgtattggtgtgagttttgagtccgaattcacaaca 12743728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 45687041 - 45686987
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||| ||||||||||||||||||||||| | |||||||||||||||||||||    
T  45687041 ttgctccatacatcatagtttgtattggtgtg-attttgagtctgaattcacaaca 45686987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 48893497 - 48893443
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  48893497 ttgctccacacatcatagtttgtattggtgtg-attttgagtccgaattcacaaca 48893443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 52467212 - 52467159
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaa 109  Q
    ||||| |||||||||||||||||||||||||||  |||||||| ||||||||||    
T  52467212 ttgcttcacacatcatagtttgtattggtgtgagttttgagtccgaattcacaa 52467159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 56178490 - 56178438
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaa 109  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||||||||||    
T  56178490 ttgctccacacatcatagtttgtattggtgtg-attttgagtccgaattcacaa 56178438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 9927313 - 9927258
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||||||||||||||||| |||||||| ||  |||||||| ||||||||||||    
T  9927313 ttgctccacacatcatagtttatattggtgcgagttttgagtccgaattcacaaca 9927258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 36994851 - 36994898
Alignment:
Q  64 cacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||  |||||||| ||||||||||||    
T  36994851 cacatcatagtttgtattggtgtgagttttgagtcagaattcacaaca 36994898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 46147250 - 46147195
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||| ||||||||||  |||||| | ||||||||||||    
T  46147250 ttgctccacacatcatagtttgcattggtgtgagttttgaggcggaattcacaaca 46147195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 54199762 - 54199705
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacagtt 114  Q
    |||||||| ||||||| ||||||||||||||| | |||||||| |||||||||||||||    
T  54199762 ttgctccatacatcatcgtttgtattggtgtg-attttgagtccgaattcacaacagtt 54199705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 54881583 - 54881629
Alignment:
Q  18 gcttgtggtttactttggttgttggttgccattggtacttgctccac 64  Q
    |||||||||||| ||||||||||||||| ||||| ||||||||||||    
T  54881583 gcttgtggtttattttggttgttggttgtcattgatacttgctccac 54881629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 29999683 - 29999651
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtga 88  Q
    |||||||||||||||||||||||||||||||||    
T  29999683 ttgctccacacatcatagtttgtattggtgtga 29999651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 36463247 - 36463196
Alignment:
Q  59 ctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||||||||||||||||||| ||||| | |||||||| ||||||||||||    
T  36463247 ctccacacatcatagtttgtattagtgtg-attttgagtccgaattcacaaca 36463196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 48143362 - 48143394
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtga 88  Q
    |||||||||||||||||||||||||||||||||    
T  48143362 ttgctccacacatcatagtttgtattggtgtga 48143394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 35662720 - 35662767
Alignment:
Q  18 gcttgtggtttactttggttgttggttgccattggtacttgctccaca 65  Q
    |||| ||||| | ||||||||||||||||||||| |||||||||||||    
T  35662720 gcttatggttaattttggttgttggttgccattgatacttgctccaca 35662767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 52082513 - 52082463
Alignment:
Q  60 tccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||||||||| |||||||||||||| | |||||||| ||||||||||||    
T  52082513 tccacacatcataatttgtattggtgtg-attttgagtccgaattcacaaca 52082463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 52095212 - 52095162
Alignment:
Q  60 tccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||| |||||||||||||||||||| | |||||||| ||||||||||||    
T  52095212 tccacacgtcatagtttgtattggtgtg-attttgagtccgaattcacaaca 52095162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 88
Target Start/End: Complemental strand, 5369933 - 5369904
Alignment:
Q  59 ctccacacatcatagtttgtattggtgtga 88  Q
    ||||||||||||||||||||||||||||||    
T  5369933 ctccacacatcatagtttgtattggtgtga 5369904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 31474460 - 31474512
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||| |||||||||| ||||||||||||||||   ||||||| ||||||||||||    
T  31474460 ttgctacacacatcattgtttgtattggtgtga---ttgagtccgaattcacaaca 31474512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 29254806 - 29254838
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtga 88  Q
    |||||||||||||||||||||||||| ||||||    
T  29254806 ttgctccacacatcatagtttgtattagtgtga 29254838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 34570268 - 34570236
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtga 88  Q
    ||||||||||||||||||||| |||||||||||    
T  34570268 ttgctccacacatcatagtttatattggtgtga 34570236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 60 - 88
Target Start/End: Complemental strand, 47038266 - 47038238
Alignment:
Q  60 tccacacatcatagtttgtattggtgtga 88  Q
    |||||||||||||||||||||||||||||    
T  47038266 tccacacatcatagtttgtattggtgtga 47038238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 2360865 - 2360774
Alignment:
Q  18 gcttgtggtttactttggttgttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaa 109  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||    
T  2360865 gcttgtgatttactttggttgttggttgccattgatacttgctccacacatcatagtttgtattggtgtgaattttgagtccaaattcacaa 2360774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 22270228 - 22270321
Alignment:
Q  18 gcttgtggtttactttggttgttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||    
T  22270228 gcttgtggttaattttggttgttggttgccattgatacttgctccacacatcatagtttgtattgctgtgaaatttgagtccgaattcataaca 22270321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 30814677 - 30814770
Alignment:
Q  18 gcttgtggtttactttggttgttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||| | ||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||    
T  30814677 gcttgtggttaattttggttgttggttgccattgatacttgctccacacatcatattttgtactggtgtgaaatttgagtccgaattcacaaca 30814770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 4510419 - 4510339
Alignment:
Q  31 tttggttgttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4510419 tttggttattggttgccattgatacttgctccacacatcatagtttgtattggtgtgaaatttgagtccgaattcacaaca 4510339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 4512261 - 4512181
Alignment:
Q  31 tttggttgttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4512261 tttggttattggttgccattgatacttgctccacacatcatagtttgtattggtgtgaaatttgagtccgaattcacaaca 4512181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 6359838 - 6359762
Alignment:
Q  18 gcttgtggtttactttggttgttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttg 94  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||| ||||    
T  6359838 gcttgtggtttactttggttgttggttcccattgatacttgctccacacatcatagtttgtattgatgtgaagtttg 6359762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 32357943 - 32357848
Alignment:
Q  18 gcttgtggtttactttggttgttggttgccattggtacttgctccacacatc--atagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||||| ||||| ||||| |||||||||||  ||| ||||||||||||||||||||| ||| ||||||||||||    
T  32357943 gcttgtggtttactttggttgttggttgtcattgatacttactccacacatcatataatttgtattggtgtgaaatttgtgtccgaattcacaaca 32357848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 6430431 - 6430496
Alignment:
Q  46 ccattggtacttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||| ||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  6430431 ccattgatacttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 6430496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 4508577 - 4508499
Alignment:
Q  31 tttggttgttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaa 109  Q
    ||||||| ||||||| ||||| |||||||| || || ||||||||||||||||||||||||||||| | ||||||||||    
T  4508577 tttggttattggttggcattgatacttgcttcatacttcatagtttgtattggtgtgaaatttgagaccgaattcacaa 4508499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 19502492 - 19502549
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacagt 113  Q
    |||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  19502492 ttgctccacacatcatagtttgtattagtgtgagttttgagtctgaattcacaacagt 19502549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 14069688 - 14069633
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  14069688 ttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 14069633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 14379716 - 14379661
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  14379716 ttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 14379661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 23555355 - 23555410
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  23555355 ttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 23555410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 31732823 - 31732766
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacagt 113  Q
    |||||||||||||||||||||||| ||||||||  |||||||| ||||||||||||||    
T  31732823 ttgctccacacatcatagtttgtactggtgtgagttttgagtccgaattcacaacagt 31732766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 18126963 - 18127015
Alignment:
Q  59 ctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  18126963 ctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 18127015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 41317293 - 41317237
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacag 112  Q
    |||||||| |||||||||||||||||||||||| ||||||||  |||||||||||||    
T  41317293 ttgctccaaacatcatagtttgtattggtgtgagatttgagttcgaattcacaacag 41317237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 4586475 - 4586530
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||  |||||||||| ||||||||| ||||||||||||    
T  4586475 ttgctccacacatcatagtttacattggtgtgagatttgagtccgaattcacaaca 4586530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 38671079 - 38671025
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  38671079 ttgctccacacatcatagtttgtattggtgtg-attttgagtccgaattcacaaca 38671025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 41648868 - 41648814
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  41648868 ttgctccacacatcatagtttgtattggtgtg-attttgagtccgaattcacaaca 41648814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 47675991 - 47675936
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||||||||||  |||| ||| ||||||||||||    
T  47675991 ttgctccacacatcatagtttgtattggtgtgagttttgtgtccgaattcacaaca 47675936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 26417633 - 26417685
Alignment:
Q  59 ctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||| ||||||||||||||||||||||  |||||||| ||||||||||||    
T  26417633 ctccacatatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 26417685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 43864561 - 43864609
Alignment:
Q  59 ctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcac 107  Q
    ||||||||||||||||||||||||||||||  |||||||| ||||||||    
T  43864561 ctccacacatcatagtttgtattggtgtgagttttgagtccgaattcac 43864609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 1113966 - 1114021
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||||||||||||||||||||||| |||||  ||||| || ||||||||||||    
T  1113966 ttgctccacacatcatagtttgtattgatgtgagttttgattcggaattcacaaca 1114021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 36146266 - 36146212
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||| |||| || |||||||| ||||||||||||    
T  36146266 ttgctccacacatcatagtttgtatttgtgt-aattttgagtccgaattcacaaca 36146212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 48489745 - 48489798
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaac 110  Q
    |||||||||||||||||||| ||||||||||| | |||||||| |||||||||||    
T  48489745 ttgctccacacatcatagttggtattggtgtg-attttgagtccgaattcacaac 48489798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 4179087 - 4179119
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtga 88  Q
    |||||||||||||||||||||||||||||||||    
T  4179087 ttgctccacacatcatagtttgtattggtgtga 4179119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 29991367 - 29991399
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtga 88  Q
    |||||||||||||||||||||||||||||||||    
T  29991367 ttgctccacacatcatagtttgtattggtgtga 29991399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 27348131 - 27348185
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||||||||||||| |||||||| ||||| | |||||||| ||||||||||||    
T  27348131 ttgctccacacatcataatttgtatttgtgtg-attttgagtccgaattcacaaca 27348185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 35854230 - 35854288
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtct-gaattcacaacagtt 114  Q
    |||||||||||||||||||||||||| ||||| | |||||| || |||||||||||||||    
T  35854230 ttgctccacacatcatagtttgtatttgtgtg-attttgagactggaattcacaacagtt 35854288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 47673795 - 47673744
Alignment:
Q  60 tccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||||||  |||| ||| ||||||| ||||    
T  47673795 tccacacatcatagtttgtattggtgtgagttttgtgtccgaattcataaca 47673744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 34310585 - 34310544
Alignment:
Q  31 tttggttgttggttgccattggtacttgctccacacatcata 72  Q
    ||||||| ||||||| ||||| ||||||||||||||||||||    
T  34310585 tttggttattggttgtcattgatacttgctccacacatcata 34310544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 25616169 - 25616201
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtga 88  Q
    |||||||| ||||||||||||||||||||||||    
T  25616169 ttgctccatacatcatagtttgtattggtgtga 25616201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 3e-31; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 602996 - 602903
Alignment:
Q  18 gcttgtggtttactttggttgttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  602996 gcttgtggtttattttgattgttggttgccattgatacttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 602903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 17758321 - 17758402
Alignment:
Q  31 tttggttgttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttgagt-ctgaattcacaaca 111  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  17758321 tttggttattggttgccattgatacttgctccacacatcatagtttgtattggtgtgaaatttgagtcccgaattcacaaca 17758402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 21589227 - 21589308
Alignment:
Q  31 tttggttgttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttgagt-ctgaattcacaaca 111  Q
    |||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||    
T  21589227 tttggttgttggtttccattgatacttgctccacacatcatagtttatattggtgtgaaatttgagtccagaattcacaaca 21589308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 17763288 - 17763369
Alignment:
Q  31 tttggttgttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttgagt-ctgaattcacaaca 111  Q
    ||||||| ||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||    
T  17763288 tttggttattggttgtcattgatacttgctccacacatcatagtttatattggtgtgaaatttgagtcccgaattcacaaca 17763369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 22424695 - 22424620
Alignment:
Q  31 tttggttgttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattca 106  Q
    ||||||| |||||| |||||| |||||||||||||||||||||||||||||  ||||||||||||||| |||||||    
T  22424695 tttggttattggttaccattgatacttgctccacacatcatagtttgtattaatgtgaaatttgagtccgaattca 22424620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 5043925 - 5044006
Alignment:
Q  31 tttggttgttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttgagtc-tgaattcacaaca 111  Q
    ||||||| ||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||    
T  5043925 tttggttattggttgtcattgatacgtgctccacacatcatagtttgtattggtgtgaaatttaagtcaggaattcacaaca 5044006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 26829992 - 26829925
Alignment:
Q  31 tttggttgttggttgccattggtacttgctccacacatc--atagtttgtattggtgtgaaatttgag 96  Q
    ||||||| |||||| |||||| |||||||||||||||||  |||||||||||||||||||||||||||    
T  26829992 tttggttattggtttccattgatacttgctccacacatcatatagtttgtattggtgtgaaatttgag 26829925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 3808567 - 3808518
Alignment:
Q  39 ttggttgccattggtacttgctccacacatcatagtttgtattggtgtga 88  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  3808567 ttggttgccattgatacttgctccacatatcatagtttgtattggtgtga 3808518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 26954145 - 26954091
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  26954145 ttgctccacacatcatagtttgtattggtgtg-attttgagtccgaattcacaaca 26954091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 22963561 - 22963508
Alignment:
Q  58 gctccacacatcatagtttgtattggtgtgaaatttgagtct-gaattcacaaca 111  Q
    |||||||||||||||||||||||||||||| | ||||||||| ||||||||||||    
T  22963561 gctccacacatcatagtttgtattggtgtg-attttgagtctggaattcacaaca 22963508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 23824832 - 23824885
Alignment:
Q  58 gctccacacatcatagtttgtattggtgtgaaatttgagtct-gaattcacaaca 111  Q
    |||||||||||||||||||||||||||||| | ||||||||| ||||||||||||    
T  23824832 gctccacacatcatagtttgtattggtgtg-attttgagtctggaattcacaaca 23824885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 5408924 - 5408892
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtga 88  Q
    |||||||||||||||||||||||||||||||||    
T  5408924 ttgctccacacatcatagtttgtattggtgtga 5408892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 5413249 - 5413217
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtga 88  Q
    |||||||||||||||||||||||||||||||||    
T  5413249 ttgctccacacatcatagtttgtattggtgtga 5413217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 14521532 - 14521478
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||  ||||||||||  |||||||| ||||||||||||    
T  14521532 ttgctccacacatcatagtttc-attggtgtgagttttgagtccgaattcacaaca 14521478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 28137265 - 28137211
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||||||| |||||||||||||||||||| | |||||| | ||||||||||||    
T  28137265 ttgctccacacgtcatagtttgtattggtgtg-attttgagaccgaattcacaaca 28137211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 88
Target Start/End: Complemental strand, 5406054 - 5406025
Alignment:
Q  59 ctccacacatcatagtttgtattggtgtga 88  Q
    ||||||||||||||||||||||||||||||    
T  5406054 ctccacacatcatagtttgtattggtgtga 5406025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 88
Target Start/End: Complemental strand, 5410379 - 5410350
Alignment:
Q  59 ctccacacatcatagtttgtattggtgtga 88  Q
    ||||||||||||||||||||||||||||||    
T  5410379 ctccacacatcatagtttgtattggtgtga 5410350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 33211053 - 33211005
Alignment:
Q  59 ctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcaca 108  Q
    |||||||||| ||||||| |||||||||||| |||||||| |||||||||    
T  33211053 ctccacacattatagtttatattggtgtgaattttgagtc-gaattcaca 33211005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 2171381 - 2171349
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtga 88  Q
    |||||||||||||||||||| ||||||||||||    
T  2171381 ttgctccacacatcatagttcgtattggtgtga 2171349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 56 - 84
Target Start/End: Complemental strand, 9182885 - 9182857
Alignment:
Q  56 ttgctccacacatcatagtttgtattggt 84  Q
    |||||||||||||||||||||||||||||    
T  9182885 ttgctccacacatcatagtttgtattggt 9182857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 56 - 84
Target Start/End: Complemental strand, 33160205 - 33160177
Alignment:
Q  56 ttgctccacacatcatagtttgtattggt 84  Q
    |||||||||||||||||||||||||||||    
T  33160205 ttgctccacacatcatagtttgtattggt 33160177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 40913553 - 40913646
Alignment:
Q  18 gcttgtggtttactttggttgttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| ||||| || |||||||||||||||||||||||||| ||||||||||||    
T  40913553 gcttgtggtttactttggttgttggtcgccattgatacttgctccgcacattattgtttgtattggtgtgaaatttgagtccgaattcacaaca 40913646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 34491467 - 34491557
Alignment:
Q  18 gcttgtggtttactttggttgttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcaca 108  Q
    |||||||||| | ||||||||||||||||||||  |||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||    
T  34491467 gcttgtggttcattttggttgttggttgccattaatacttgctccacacattatagtttgtattggtgtaaaatttgagtccgaattcaca 34491557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 6095463 - 6095390
Alignment:
Q  39 ttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttgagt-ctgaattcacaaca 111  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  6095463 ttggttgccattgatacttgctccacacatcatagtttgtattggtgtgaaatttgagtcccgaattcacaaca 6095390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 31340110 - 31340018
Alignment:
Q  18 gcttgtggtttactttggttgttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| || |||||||  | ||||||||||    
T  31340110 gcttgtggtttactttggttgttggttgccattgatacatgctccacacattatagtttgtattggtgt-aattttgagtacgcattcacaaca 31340018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 43403611 - 43403530
Alignment:
Q  31 tttggttgttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttgagt-ctgaattcacaaca 111  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||    
T  43403611 tttggttattggttgccattgatacttgctccacacatcatagtttgtattggtgtgaaattttagtccggaattcacaaca 43403530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 47304537 - 47304607
Alignment:
Q  18 gcttgtggtttactttggttgttggttgccattggtacttgctccacacatcatagtttgtattggtgtga 88  Q
    ||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||    
T  47304537 gcttgtgatttactttggttgttggttgtcattgatacttgctccacacatcatagtttgtattgttgtga 47304607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 43401668 - 43401601
Alignment:
Q  31 tttggttgttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttgagtc 98  Q
    ||||||| ||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||    
T  43401668 tttggttattggttgccattgatacttgctccacagatcatagttggtattggtgtgaaatttgagtc 43401601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 29196244 - 29196189
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  29196244 ttgctccacacatcatagtttgtattggtgtgagatttgagtccgaattcacaaca 29196189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 49199336 - 49199254
Alignment:
Q  31 tttggttgttggttgccattggtacttgctccacacatc--atagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||| ||||||||||||| |||||||||||||||||  ||| ||||||||| ||||||||||||| | ||||||||||||    
T  49199336 tttggttattggttgccattgatacttgctccacacatcatataatttgtattgctgtgaaatttgagaccgaattcacaaca 49199254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 46173640 - 46173688
Alignment:
Q  18 gcttgtggtttactttggttgttggttgccattggtacttgctccacac 66  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  46173640 gcttgtggtttactttggttgttggttgccattgatacttgctccacac 46173688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 29813375 - 29813430
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  29813375 ttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 29813430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 30236423 - 30236504
Alignment:
Q  31 tttggttgttggttgccattggtacttgctccacacatcatagtt-tgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||||||||||| ||||| ||||||||||||||||| | ||| | |||||||||||||||||||   ||||||||||||    
T  30236423 tttggttgttggttgacattgatacttgctccacacatctttgttatttattggtgtgaaatttgagatcgaattcacaaca 30236504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 761158 - 761211
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||    
T  761158 ttgctccacacatcatagtttgtattggtgtg--atttgagtccgaattcacaaca 761211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 54594003 - 54594086
Alignment:
Q  31 tttggttgttggttgccattggtacttgctccacacatcata--gtttgtattggtgtgaaatttgagt-ctgaattcacaaca 111  Q
    ||||||| ||||||| ||||| ||||||||| ||| ||||||  ||||||||||||||||||||||||| | ||||||||||||    
T  54594003 tttggttattggttgtcattgatacttgctctacatatcatatagtttgtattggtgtgaaatttgagtcccgaattcacaaca 54594086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 55301841 - 55301758
Alignment:
Q  31 tttggttgttggttgccattggtacttgctccacacatc--atagtttgtattggtgtgaaatttgagt-ctgaattcacaaca 111  Q
    ||||||| ||||||| ||||| |||||||||||||| ||  ||| |||||||||||||||||||||||| | ||||||||||||    
T  55301841 tttggttattggttgtcattgatacttgctccacacctcatataatttgtattggtgtgaaatttgagtccggaattcacaaca 55301758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 22834861 - 22834807
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  22834861 ttgctccacacatcatagtttgtattggtgtg-attttgagtccgaattcacaaca 22834807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 5236308 - 5236257
Alignment:
Q  59 ctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  5236308 ctccacacatcatagtttgtattggtgtg-attttgagtccgaattcacaaca 5236257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 9666324 - 9666270
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||    
T  9666324 ttgctccacagatcatagtttgtattggtgtg-attttgagtccgaattcacaaca 9666270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 29682670 - 29682729
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtga-aatttgagtctgaattcacaacagtt 114  Q
    |||||||||||||||||||||||||||||||||   |||| ||| |||||||||||||||    
T  29682670 ttgctccacacatcatagtttgtattggtgtgattttttgtgtcggaattcacaacagtt 29682729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 39153219 - 39153164
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||||||||||  |||||| | |||||| |||||    
T  39153219 ttgctccacacatcatagtttgtattggtgtgagttttgagcccgaattctcaaca 39153164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 40734811 - 40734865
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||||||||| | |||||| | ||||||||||||    
T  40734811 ttgctccacacatcatagtttgtattggtgtg-attttgagaccgaattcacaaca 40734865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 4160105 - 4160059
Alignment:
Q  65 acatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||||||||||||||||||||  |||||||| ||||||||||||    
T  4160105 acatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 4160059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 23391764 - 23391707
Alignment:
Q  59 ctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacagttat 116  Q
    ||||||||||||||||||||||||||||||  |||| ||  |||||||||||| ||||    
T  23391764 ctccacacatcatagtttgtattggtgtgagttttgtgttcgaattcacaacaattat 23391707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 9635978 - 9635946
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtga 88  Q
    |||||||||||||||||||||||||||||||||    
T  9635978 ttgctccacacatcatagtttgtattggtgtga 9635946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 23410182 - 23410131
Alignment:
Q  60 tccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||||||||||||||||||| |||||  |||| ||| ||||||||||||    
T  23410182 tccacacatcatagtttgtattgatgtgagttttgtgtccgaattcacaaca 23410131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 29811182 - 29811237
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||| |||||| |||||||||||||||  |||||||  ||||||||||||    
T  29811182 ttgctccacaaatcatattttgtattggtgtgagttttgagttcgaattcacaaca 29811237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 31314754 - 31314808
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||| ||||||||||||||||||||||| | |||||||| | ||||||||||    
T  31314754 ttgctccatacatcatagtttgtattggtgtg-attttgagtcggtattcacaaca 31314808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 37408773 - 37408831
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacagtta 115  Q
    ||||||||||||||||| ||||||||| |||| | |||||| | ||||||||||||||||    
T  37408773 ttgctccacacatcatattttgtattgatgtg-actttgaggccgaattcacaacagtta 37408831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 41819410 - 41819363
Alignment:
Q  18 gcttgtggtttacttt-ggttgttggttgccattggtacttgctccac 64  Q
    ||||||| |||||||| |||||||||||||||||| ||||||||||||    
T  41819410 gcttgtgatttacttttggttgttggttgccattgatacttgctccac 41819363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 51399128 - 51399182
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||| |||||||||||||||||||| || | |||||||| ||||||||||||    
T  51399128 ttgctccatacatcatagtttgtattggtatg-attttgagtccgaattcacaaca 51399182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 4570210 - 4570273
Alignment:
Q  54 acttgctccacacatcatag----tttgtattggtgtgaaatttgag-tctgaattcacaacag 112  Q
    |||||||||||||||||||     ||||||||||||||||||||||| || |||||||||||||    
T  4570210 acttgctccacacatcatatataatttgtattggtgtgaaatttgagttcagaattcacaacag 4570273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 56 - 86
Target Start/End: Original strand, 7762580 - 7762610
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgt 86  Q
    |||||||||||||||||||||||||||||||    
T  7762580 ttgctccacacatcatagtttgtattggtgt 7762610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 50432516 - 50432478
Alignment:
Q  31 tttggttgttggttgccattggtacttgctccacacatc 69  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  50432516 tttggttgttggttgccattgatatttgctccacacatc 50432478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 2074936 - 2074882
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacag 112  Q
    ||||||||||||||||||||| |||||||||| | |||| ||| |||||||||||||    
T  2074936 ttgctccacacatcatagttt-tattggtgtg-attttgggtccgaattcacaacag 2074882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 5257998 - 5257966
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtga 88  Q
    |||||||||||||||||||| ||||||||||||    
T  5257998 ttgctccacacatcatagttcgtattggtgtga 5257966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 19683742 - 19683710
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtga 88  Q
    |||||||| ||||||||||||||||||||||||    
T  19683742 ttgctccaaacatcatagtttgtattggtgtga 19683710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 27305571 - 27305519
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||||||||||||||||  |||||||||| | |||||||| ||||||||||||    
T  27305571 ttgctccacacatcatagtt--tattggtgtg-attttgagtccgaattcacaaca 27305519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 40735696 - 40735728
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtga 88  Q
    ||||||||||||||||| |||||||||||||||    
T  40735696 ttgctccacacatcataatttgtattggtgtga 40735728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 38747279 - 38747355
Alignment:
Q  37 tgttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacagt 113  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  38747279 tgttggttgccattgatacttgctccacacatcatagtttgtattggtgtgaaatttgagtccaaattcacaacagt 38747355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 40147517 - 40147610
Alignment:
Q  18 gcttgtggtttactttggttgttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||||||||  ||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  40147517 gcttgtggtttaacttggttgttggtttccattaatacttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 40147610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 28278571 - 28278651
Alignment:
Q  18 gcttgtggtttactttggttgttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttgagtc 98  Q
    |||||||||| | |||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  28278571 gcttgtggttaattttgtttgttggttgccattgatacttgctccacacatcatattttgtattggtgtgaaatttgagtc 28278651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 5058342 - 5058408
Alignment:
Q  31 tttggttgttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttgagt 97  Q
    ||||||||||||||||||||| |||||| ||||||||||||| ||| ||||||||||||||||||||    
T  5058342 tttggttgttggttgccattgatacttgttccacacatcataatttatattggtgtgaaatttgagt 5058408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 27015802 - 27015878
Alignment:
Q  18 gcttgtggtttactttggttgttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttg 94  Q
    ||||||| |||||||||||||||| ||||||||  |||||||||||| ||||||||||||| ||| |||||||||||    
T  27015802 gcttgtgatttactttggttgttgattgccattaatacttgctccacccatcatagtttgttttgctgtgaaatttg 27015878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 40751256 - 40751351
Alignment:
Q  18 gcttgtggtttac-tttggttgttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttgagt-ctgaattcacaaca 111  Q
    ||||||||||||| ||||||| ||||||| ||||| ||||| ||||||| |||||||||||||||||||||| |||| ||| | ||||||||||||    
T  40751256 gcttgtggtttacatttggttattggttgtcattgatacttactccacaaatcatagtttgtattggtgtgagatttaagtccggaattcacaaca 40751351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 538334 - 538387
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaa 109  Q
    ||||||||||||||||||||| |||||||||||  |||||||||||||||||||    
T  538334 ttgctccacacatcatagtttatattggtgtgagttttgagtctgaattcacaa 538387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 13488517 - 13488569
Alignment:
Q  59 ctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||| ||||||||||||||| ||||||||| ||||||||||||    
T  13488517 ctccacacatcatattttgtattggtgtgagatttgagtccgaattcacaaca 13488569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 534072 - 534127
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||||||||||||||||| |||||||||||  |||||||| ||||||||||||    
T  534072 ttgctccacacatcatagtttctattggtgtgagttttgagtccgaattcacaaca 534127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 3075604 - 3075549
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||||||||||  ||| |||| ||||||||||||    
T  3075604 ttgctccacacatcatagtttgtattggtgtgagtttttagtccgaattcacaaca 3075549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 30682777 - 30682722
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||||||||||  |||||||| | ||||||||||    
T  30682777 ttgctccacacatcatagtttgtattggtgtgagttttgagtccgtattcacaaca 30682722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 40763261 - 40763356
Alignment:
Q  18 gcttgtggtttac-tttggttgttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttgagt-ctgaattcacaaca 111  Q
    |||| |||||||| |||| || ||||||| ||||| ||||||||||||| |||||||||| ||||||||||| |||| ||| | ||||||||||||    
T  40763261 gcttatggtttacatttgattattggttgtcattgatacttgctccacagatcatagtttatattggtgtgagatttaagtccggaattcacaaca 40763356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 32637140 - 32637196
Alignment:
Q  59 ctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacagtta 115  Q
    ||||||||||||||||||||||||||||||  ||||| || |||||||||| |||||    
T  32637140 ctccacacatcatagtttgtattggtgtgagttttgaatccgaattcacaatagtta 32637196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 33831992 - 33832047
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacag 112  Q
    |||||||||||||||||||||||||| |||| || |||||||| |||||||||||||    
T  33831992 ttgctccacacatcatagtttgtatttgtgt-aattttgagtccgaattcacaacag 33832047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 39468403 - 39468347
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacag 112  Q
    ||||||||||||||||||||||||||||||| |  |||||||  |||||||||||||    
T  39468403 ttgctccacacatcatagtttgtattggtgtaagttttgagttcgaattcacaacag 39468347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 5887289 - 5887235
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||    
T  5887289 ttgctccacatatcatagtttgtattggtgtg-attttgagtccgaattcacaaca 5887235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 28750510 - 28750455
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||||||||||||| |||||||||||||||  ||||||||  |||||||||||    
T  28750510 ttgctccacacatcataatttgtattggtgtgagttttgagtccaaattcacaaca 28750455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 31183287 - 31183341
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||| ||||||||||||||| | |||||||| ||||||||||||    
T  31183287 ttgctccacacatcatggtttgtattggtgtg-attttgagtccgaattcacaaca 31183341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 42426090 - 42426035
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||| ||||||  |||||||  ||||||||||||    
T  42426090 ttgctccacacatcatagtttgtatttgtgtgagttttgagttcgaattcacaaca 42426035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 42428285 - 42428244
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagt 97  Q
    |||||||||||||||||||||||||||||||||  |||||||    
T  42428285 ttgctccacacatcatagtttgtattggtgtgagttttgagt 42428244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 16649689 - 16649635
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||||||||||||||||||||||||| || | |||||||  ||||||||||||    
T  16649689 ttgctccacacatcatagtttgtattggtatg-attttgagttcgaattcacaaca 16649635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 87
Target Start/End: Complemental strand, 36073897 - 36073866
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtg 87  Q
    ||||||||||||||||||||||||||||||||    
T  36073897 ttgctccacacatcatagtttgtattggtgtg 36073866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 16409793 - 16409825
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtga 88  Q
    ||||||||||||||||| |||||||||||||||    
T  16409793 ttgctccacacatcatactttgtattggtgtga 16409825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 19806676 - 19806729
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||| ||||||||||||||||||||||  ||||  |||||||| ||||||||||||    
T  19806676 ttgccccacacatcatagtttgtattg--gtgagttttgagtccgaattcacaaca 19806729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 25413074 - 25413106
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtga 88  Q
    |||||||||||||||||||| ||||||||||||    
T  25413074 ttgctccacacatcatagttcgtattggtgtga 25413106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 30182902 - 30182934
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtga 88  Q
    ||||||||||||||||||||||| |||||||||    
T  30182902 ttgctccacacatcatagtttgttttggtgtga 30182934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 45727224 - 45727305
Alignment:
Q  31 tttggttgttggttgccattggtacttgctccacacatcata--gtttgtattggtgtgaaatttgagtctgaattcacaac 110  Q
    ||||||| || |||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  45727224 tttggttattagttgccattgatacttgctccacacatcatatagtttgtattggtgtgaaatttgagtctgaattcacaac 45727305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 35446769 - 35446677
Alignment:
Q  21 tgtggtttactttggttgttggttgccattggtacttgctccacacatc--atagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||  |||| |||||||||||||||||  ||||||| ||||| ||||||||||||||| ||||||||||||    
T  35446769 tgtggtttactttggttgttggttgggattgatacttgctccacacatcatatagtttatattgatgtgaaatttgagtcagaattcacaaca 35446677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 29868182 - 29868237
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  29868182 ttgctccacacatcatagtttgtattgctgtgaaatttgagtccgaattcacaaca 29868237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 2334272 - 2334211
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacagttataa 118  Q
    ||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  2334272 ttgcttcacacatcatagtttgtattggtgtg-attttgagtctgaattcacaacagttataa 2334211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 11690801 - 11690856
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  11690801 ttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 11690856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 723601 - 723547
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  723601 ttgctccacacatcatagtttgtattggtgtg-attttgagtccgaattcacaaca 723547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 1631604 - 1631538
Alignment:
Q  31 tttggttgttggttgccattggtacttgctccacacatc--atagtttgtattggtgtgaaatttga 95  Q
    ||||||||||||||| ||||| ||||| |||||||||||  ||||||||||||| ||||||||||||    
T  1631604 tttggttgttggttgtcattgatacttactccacacatcatatagtttgtattgatgtgaaatttga 1631538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 34139627 - 34139573
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  34139627 ttgctccacacatcatagtttgtattggtgtg-attttgagtccgaattcacaaca 34139573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 36987929 - 36987875
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  36987929 ttgctccacacatcatagtttgtattggtgtg-attttgagtccgaattcacaaca 36987875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 42362659 - 42362713
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  42362659 ttgctccacacatcatagtttgtattggtgtg-attttgagtccgaattcacaaca 42362713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 11151450 - 11151393
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacagt 113  Q
    ||||||||||||||||||||||||||||| |||  |||||||  ||||||||||||||    
T  11151450 ttgctccacacatcatagtttgtattggtatgagttttgagttcgaattcacaacagt 11151393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 6594858 - 6594804
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||||||||| | ||||||||  |||||||||||    
T  6594858 ttgctccacacatcatagtttgtattggtgtg-attttgagtccaaattcacaaca 6594804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 14633682 - 14633628
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||| |||||||||||||||||||||||||| | |||||||||||| ||||||||    
T  14633682 ttgcttcacacatcatagtttgtattggtgtg-attttgagtctgaaatcacaaca 14633628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 24885899 - 24885953
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||| |||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  24885899 ttgctacacacatcatagtttgtattggtgtg-attttgagtccgaattcacaaca 24885953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 33162308 - 33162254
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||||||||||||||||||||||| |||| | |||||||| ||||||||||||    
T  33162308 ttgctccacacatcatagtttgtattgatgtg-attttgagtccgaattcacaaca 33162254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 36773872 - 36773926
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||||||||| | ||||| || ||||||||||||    
T  36773872 ttgctccacacatcatagtttgtattggtgtg-attttgaatccgaattcacaaca 36773926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 5723110 - 5723078
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtga 88  Q
    |||||||||||||||||||||||||||||||||    
T  5723110 ttgctccacacatcatagtttgtattggtgtga 5723078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 17057223 - 17057164
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacagttat 116  Q
    |||||| |||||||||| |||||||||||||| | |||||||| |||||||||||| ||||    
T  17057223 ttgctctacacatcatattttgtattggtgtg-attttgagtccgaattcacaacaattat 17057164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 17085206 - 17085147
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacagttat 116  Q
    |||||| |||||||||| |||||||||||||| | |||||||| |||||||||||| ||||    
T  17085206 ttgctctacacatcatattttgtattggtgtg-attttgagtccgaattcacaacaattat 17085147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 36205519 - 36205487
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtga 88  Q
    |||||||||||||||||||||||||| ||||||    
T  36205519 ttgctccacacatcatagtttgtattagtgtga 36205487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 36317861 - 36317813
Alignment:
Q  63 acacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||||| ||||||||||||||||  ||||||||  |||||||||||    
T  36317861 acacatcattgtttgtattggtgtgagttttgagtccaaattcacaaca 36317813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 42434862 - 42434794
Alignment:
Q  31 tttggttgttggttgccattggtacttgctccacacatc--atagtttgtattggtgtgaaatttgagt 97  Q
    ||||||||||||||||||||| |||||||||| ||||||  ||||||||||||||||||||||||||||    
T  42434862 tttggttgttggttgccattgatacttgctcctcacatcatatagtttgtattggtgtgaaatttgagt 42434794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 3303525 - 3303474
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcac 107  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  3303525 ttgctccacacatcatagtttgtattggtgtgagatttgagtccgaattcac 3303474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 4743082 - 4743027
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||    
T  4743082 ttgctccacacattatagtttgtattggtgtgagatttgagtccgaattcacaaca 4743027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 15213100 - 15213155
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  15213100 ttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 15213155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 30143654 - 30143708
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  30143654 ttgctccacacatcatagtttgtattggtgtg-attttgagtctgaattcacaaca 30143708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 5689581 - 5689635
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  5689581 ttgctccacacatcatagtttgtattggtgtg-attttgagtcggaattcacaaca 5689635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 41366472 - 41366420
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaa 109  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||||||||||    
T  41366472 ttgctccacacatcatagtttgtattggtgtg-attttgagtccgaattcacaa 41366420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 6599279 - 6599338
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacagttat 116  Q
    |||||| ||||||||||||||||||||||||| | |||||||| |||||||||||| ||||    
T  6599279 ttgctctacacatcatagtttgtattggtgtg-attttgagtccgaattcacaacaattat 6599338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 6674732 - 6674791
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacagttat 116  Q
    |||||| ||||||||||||||||||||||||| | |||||||| |||||||||||| ||||    
T  6674732 ttgctctacacatcatagtttgtattggtgtg-attttgagtccgaattcacaacaattat 6674791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 12702485 - 12702431
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||||||||||||||||||||||| |||| | |||||||| ||||||||||||    
T  12702485 ttgctccacacatcatagtttgtattgatgtg-attttgagtccgaattcacaaca 12702431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 17982967 - 17983021
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgag-tctgaattcacaaca 111  Q
    ||||||||||||||||||||||||||||||||  ||||||| || ||||||||||||    
T  17982967 ttgctccacacatcatagtttgtattggtgtg--atttgagatcggaattcacaaca 17983021  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 4731972 - 4732026
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||| ||||||||||||||| | |||||||  ||||||||||||    
T  4731972 ttgctccacacatcattgtttgtattggtgtg-attttgagttcgaattcacaaca 4732026  T

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Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 18105930 - 18105876
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||| ||||||||||||||||||| ||||| | |||||||||||||||| ||||    
T  18105930 ttgctctacacatcatagtttgtattagtgtg-attttgagtctgaattcataaca 18105876  T

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Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 87
Target Start/End: Complemental strand, 34254185 - 34254154
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtg 87  Q
    ||||||||||||||||||||||||||||||||    
T  34254185 ttgctccacacatcatagtttgtattggtgtg 34254154  T

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Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 87
Target Start/End: Complemental strand, 34256361 - 34256330
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtg 87  Q
    ||||||||||||||||||||||||||||||||    
T  34256361 ttgctccacacatcatagtttgtattggtgtg 34256330  T

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Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 60 - 111
Target Start/End: Original strand, 4283819 - 4283872
Alignment:
Q  60 tccacacatcata--gtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||  |||||||||||||| ||||||||| | ||||||||||||    
T  4283819 tccacacatcatatagtttgtattggtgtaaaatttgagaccgaattcacaaca 4283872  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 4734020 - 4734079
Alignment:
Q  56 ttgctccacacatcatag-tttgtattggtgtgaaatttgagtctgaattcacaacagtta 115  Q
    |||||||||||||||| | ||||||||||||| || ||||| || ||||||||||||||||    
T  4734020 ttgctccacacatcattggtttgtattggtgt-aattttgaatccgaattcacaacagtta 4734079  T

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Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 55 - 115
Target Start/End: Complemental strand, 8965546 - 8965488
Alignment:
Q  55 cttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacagtta 115  Q
    |||||||||| ||||||||||| |||||||||| | |||||||  ||||||||||||||||    
T  8965546 cttgctccacgcatcatagttt-tattggtgtg-attttgagttcgaattcacaacagtta 8965488  T

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Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 19945213 - 19945181
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtga 88  Q
    ||||||||||||||| |||||||||||||||||    
T  19945213 ttgctccacacatcaaagtttgtattggtgtga 19945181  T

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Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 31218571 - 31218603
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtga 88  Q
    ||||||||||||||||||||| |||||||||||    
T  31218571 ttgctccacacatcatagtttatattggtgtga 31218603  T

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Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 42498509 - 42498541
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtga 88  Q
    ||||||||||||||||| |||||||||||||||    
T  42498509 ttgctccacacatcatattttgtattggtgtga 42498541  T

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Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 44304169 - 44304201
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtga 88  Q
    ||||||||||||||||||| |||||||||||||    
T  44304169 ttgctccacacatcatagtatgtattggtgtga 44304201  T

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Target: scaffold0176 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 17866 - 17807
Alignment:
Q  39 ttggttgccattggtacttgctccacacatcatagtttgtattggtgtgaaatttgagtc 98  Q
    |||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  17866 ttggttgctattgatacttgctacacacatcatagtttgtattggtgtgaaatttgagtc 17807  T

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Target: scaffold0066 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 20269 - 20216
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    ||||||||||||||||||||||||||||| ||  | ||||||| ||||||||||||    
T  20269 ttgctccacacatcatagtttgtattggtatg--agttgagtccgaattcacaaca 20216  T

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Target: scaffold1668 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1668
Description:

Target: scaffold1668; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 1356 - 1301
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaaca 111  Q
    |||||||||||||||||| ||||||||||||||  |||| ||  ||||||||||||    
T  1356 ttgctccacacatcatagattgtattggtgtgagttttgtgttcgaattcacaaca 1301  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 148966 - 148914
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaa 109  Q
    ||||||||||||| ||||||||||||| |||| | |||||||| ||||||||||    
T  148966 ttgctccacacattatagtttgtattgatgtg-attttgagtccgaattcacaa 148914  T

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Target: scaffold0286 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 11880 - 11912
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtga 88  Q
    |||||||||||||||||||| ||||||||||||    
T  11880 ttgctccacacatcatagttcgtattggtgtga 11912  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 434848 - 434880
Alignment:
Q  56 ttgctccacacatcatagtttgtattggtgtga 88  Q
    |||||||||||||||||||| ||||||||||||    
T  434848 ttgctccacacatcatagttcgtattggtgtga 434880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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