View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10330_high_11 (Length: 387)
Name: NF10330_high_11
Description: NF10330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10330_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 15 - 275
Target Start/End: Complemental strand, 36994220 - 36993960
Alignment:
| Q |
15 |
atgaacatgaatatctaataagttatgctataaattaacagacagagaagatgacggcacatgatcctttgcaaaaagagatggcaacccaaaagaaaga |
114 |
Q |
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| T |
36994220 |
atgaacatgaatatctaataagttgtgctataaattaacagacagagaagatgacggcacatgatcctttgcaaaaagagatggcaacccaaaagaaaga |
36994121 |
T |
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| Q |
115 |
agaaagggttaaccaggctgagcttgataaagaggcggcgcgtgaacacaacgctgcaacttctgccgggcaccaattgggggtgggtggacaccacacc |
214 |
Q |
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| T |
36994120 |
agaaagggttaaccaggctgagcttgataaagaggcggcgcgtgaacacaacgctgcagcttctgccgggcaccaattgggggtgggtggacaccacacc |
36994021 |
T |
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| Q |
215 |
acaggaactggtggggctgctcaaaatagggcatagtttgggctgtgagtcactgggtatg |
275 |
Q |
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| T |
36994020 |
acgggaactggtggggctgctcaaaatagggcatagtttgggctgtgagtcactgggtatg |
36993960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 46 - 365
Target Start/End: Complemental strand, 36988414 - 36988089
Alignment:
| Q |
46 |
aaattaacagacagagaagatgacggcacatgatcctttgcaaaaagagatggcaacccaaaagaaagaagaaagggttaaccaggctgagcttgataaa |
145 |
Q |
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| T |
36988414 |
aaattaacagacagagaagatgacggcacatgatcctttgcaaaaggagatggcaacccaaaagaaagaagaaagggttaaccaggctgaacttgataaa |
36988315 |
T |
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| Q |
146 |
gaggcggcgcgtgaacacaacgctgcaacttctgccgggcaccaattgggggtgggtggacaccacaccacaggaactggtggggctgctcaaaataggg |
245 |
Q |
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| T |
36988314 |
gaggcggcgcgtgaacacaacgctgcagccaccaccgggcaccaattggggcagggtggacaccatacctcgggaactggtggggctgctcaaacgagga |
36988215 |
T |
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| Q |
246 |
catagtttgggctgtgagtcact--------gggtatggaactgggggtacacttaccgttaagttacagtagtaatacttattatgtatcaataaagta |
337 |
Q |
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| T |
36988214 |
gacagtttgggctgtgagtcactgagtcacagggtatggaactagtggt--acttaacattaagttacagcagttatagttattgtgtatcaataaagta |
36988117 |
T |
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| Q |
338 |
acagaagaaggtttagtaccctagtgta |
365 |
Q |
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| T |
36988116 |
acataagaaggtttagtaccctggtgta |
36988089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 276 - 372
Target Start/End: Complemental strand, 36993796 - 36993700
Alignment:
| Q |
276 |
gaactgggggtacacttaccgttaagttacagtagtaatacttattatgtatcaataaagtaacagaagaaggtttagtaccctagtgtagtgtgtg |
372 |
Q |
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| T |
36993796 |
gaactgggggtacactcaccgttaagttacagtagtaatacttattatgtatcaataaagtaacagaaggtggtttagtaccctagtgtagtgtgtg |
36993700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 165
Target Start/End: Complemental strand, 36998989 - 36998877
Alignment:
| Q |
53 |
cagacagagaagatgacggcacatgatcctttgcaaaaagagatggcaacccaaaagaaagaagaaagggttaaccaggctgagcttgataaagaggcgg |
152 |
Q |
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| T |
36998989 |
cagactgagaagatgacagcacgtgatcctgtgcaaaaagagatggcaacccataagaaagaggcaaagatgaaccaggcagagctagataagctggcag |
36998890 |
T |
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| Q |
153 |
cgcgtgaacacaa |
165 |
Q |
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| T |
36998889 |
cacgtgaacacaa |
36998877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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