View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10330_high_18 (Length: 307)
Name: NF10330_high_18
Description: NF10330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10330_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 49623406 - 49623700
Alignment:
| Q |
1 |
taacactttaaataactcttccaaaaaattagtgatatgtnnnnnnnggagggcaaactactacaaaaactaacatgagaacattatatttgccaacaac |
100 |
Q |
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| T |
49623406 |
taacactttaaataactcttccaaaaaattagtgatatgtaaaaaaaga--ggcaaactactacaaaaactagcatgagaacatcgtatttgccaacaac |
49623503 |
T |
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| Q |
101 |
aacaaaacaaagaaggtaacaacatataataacaccgggtcgtacttagatgaaaatgttcagtttatcagtattggcattgtcaattgagttaaacctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
49623504 |
aacaaaacaaagaaggtaacaacatataataacaccgggtcgtacttaaatgaaaatgttcagtttattaatattggcattgtcaattgagttaaacctt |
49623603 |
T |
|
| Q |
201 |
tctgaccactattgatttattattttattcaaaattgcaacagaaatggtccaaatcatgataacttgataaccaataatgccacactacacctatg |
297 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49623604 |
tctgaccacggttgatttattattttattcaaaattgcaacagaaatggtccaaatcatgataacttgataaccaataatgccacactacacctatg |
49623700 |
T |
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