View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10330_high_22 (Length: 273)
Name: NF10330_high_22
Description: NF10330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10330_high_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 37830561 - 37830822
Alignment:
| Q |
1 |
aagtaactctaggaggaaagttgatggtgttgatatgcatgttccttagaaagatagttctcgagtgaacttgaatgaatggtgccattggttggaccaa |
100 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37830561 |
aagtaaatctaggaggaaagttgagagtgttgatatgcctgttccttagaaagatagttctcgagtgaacttgaatgaatggtgccattggttggaccaa |
37830660 |
T |
|
| Q |
101 |
aaatatgatatggtgtcatttgactttaacaatgagatgttcttttgtaacaaatttaccctcttactcatcaaacataatggaagaattgttgaccaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37830661 |
aaatatgatatggtgtcatttgactttaacaatgagatgttcttttgtaacaaatttaccctcttactcatcaaacataatggaagaattgttgaccaga |
37830760 |
T |
|
| Q |
201 |
cacttgggggtgttcaattagtgtgttttctttagtctgtactgttgctaagaccgtttctt |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37830761 |
cacttgggggtgttcaattagtgtgttttctttagtctgtactattgctaagaccgtttctt |
37830822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 12652049 - 12652144
Alignment:
| Q |
64 |
agtgaacttgaatgaatggtgccattggttggaccaaaaatatgatatggtgtcatttgactttaacaatgagatgttcttttgtaacaaatttacc |
160 |
Q |
| |
|
||||||||||||||||| || |||||||||| || | | ||||||||| ||| |||||||||| ||||||||| || |||||||||||| ||||| |
|
|
| T |
12652049 |
agtgaacttgaatgaattttgtcattggttgggcctagataatgatatggggtcgtttgactttatcaatgagatatt-ttttgtaacaaacttacc |
12652144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 160
Target Start/End: Original strand, 12646924 - 12647018
Alignment:
| Q |
65 |
gtgaacttgaatgaatggtgccattggttggaccaaaaatatgatatggtgtcatttgactttaacaatgagatgttcttttgtaacaaatttacc |
160 |
Q |
| |
|
|||||||||||||||| ||| |||||||| ||| | | ||||||||| ||| |||||||||| ||||||||| || |||||||||||| ||||| |
|
|
| T |
12646924 |
gtgaacttgaatgaattttgctattggttgaacctagataatgatatggggtcgtttgactttatcaatgagatatt-ttttgtaacaaacttacc |
12647018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 12516884 - 12516790
Alignment:
| Q |
1 |
aagtaactctaggaggaaagttgatggtgttgatatgcatgttccttagaaagatagttctcgagtgaacttgaatgaatggtgccattggttgg |
95 |
Q |
| |
|
|||||||||| |||||||| | ||||| || |||| | |||| ||| | |||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
12516884 |
aagtaactcttggaggaaactcgatggccttaatattcctgtttctttgcgagatagttctggagtgaacttgaatgaattctgccattggttgg |
12516790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 12712072 - 12711999
Alignment:
| Q |
65 |
gtgaacttgaatgaatggtgccattggttggaccaaaaatatgatatggtgtcatttgactttaacaatgagat |
138 |
Q |
| |
|
|||||||||||||||| ||||||||||| | || | |||||||| |||||||||||||||| ||||||||| |
|
|
| T |
12712072 |
gtgaacttgaatgaattttgccattggttaggcccatcttatgatattgtgtcatttgactttatcaatgagat |
12711999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 22535531 - 22535272
Alignment:
| Q |
1 |
aagtaactctaggaggaaagttgatggtgttgat---atgcatgttccttagaaagatagttctcgagtgaacttgaatgaatggtgccattggttggac |
97 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
22535531 |
aagtaactcttggaggaaacttgatggtgttgatcatatgcccgttccttggaaagatagttctcgagtgaacttgaatgaatggtgtcattggttggac |
22535432 |
T |
|
| Q |
98 |
caaaaatatgatatggtgtcatttgactttaacaatgagatgttcttttgtaacaaatttaccctcttactcatcaaacataatggaagaattgttgacc |
197 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
22535431 |
aaaaaatat---atggtgtcatttgactttagcaatgagatgttctct-gtaacaaatttacccccttactcatcaaacataatggaagaattgttgaac |
22535336 |
T |
|
| Q |
198 |
agacacttgggggtgttcaattagtgtgttttctttagtctgtactgttgctaagaccgtttctt |
262 |
Q |
| |
|
||||||||||||||||| ||| |||||| || ||||||||| |||||| ||||| |||| ||||| |
|
|
| T |
22535335 |
agacacttgggggtgttaaatcagtgtg-ttgctttagtctatactgtcgctaacaccgcttctt |
22535272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University