View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10330_high_33 (Length: 239)

Name: NF10330_high_33
Description: NF10330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10330_high_33
NF10330_high_33
[»] chr3 (4 HSPs)
chr3 (18-103)||(38775884-38775969)
chr3 (18-77)||(13078416-13078475)
chr3 (18-76)||(40697138-40697196)
chr3 (18-76)||(47587887-47587945)
[»] chr8 (3 HSPs)
chr8 (18-77)||(39569822-39569881)
chr8 (18-76)||(37502211-37502269)
chr8 (18-76)||(36638427-36638485)
[»] chr7 (2 HSPs)
chr7 (18-77)||(26336126-26336185)
chr7 (18-76)||(31833499-31833557)
[»] chr5 (1 HSPs)
chr5 (18-76)||(18328959-18329017)
[»] chr1 (2 HSPs)
chr1 (18-76)||(10444508-10444566)
chr1 (18-76)||(16784397-16784455)


Alignment Details
Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 38775969 - 38775884
Alignment:
Q  18 agtcgaacccaggtcgctggattcaaagtccagagtgctaaccactacaccatagaaccctcgtgctatttgattttacatatcgg 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38775969 agtcgaacccaggtcgctggattcaaagtccagagtgctaaccactacaccatagaaccctcgtgctctttgattttacatatcgg 38775884  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 13078475 - 13078416
Alignment:
Q  18 agtcgaacccaggtcgctggattcaaagtccagagtgctaaccactacaccatagaaccc 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13078475 agtcgaacccaggtcgctggattcaaagtccagagtgctaaccactacaccatagaaccc 13078416  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 40697138 - 40697196
Alignment:
Q  18 agtcgaacccaggtcgctggattcaaagtccagagtgctaaccactacaccatagaacc 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40697138 agtcgaacccaggtcgctggattcaaagtccagagtgctaaccactacaccatagaacc 40697196  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 47587945 - 47587887
Alignment:
Q  18 agtcgaacccaggtcgctggattcaaagtccagagtgctaaccactacaccatagaacc 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47587945 agtcgaacccaggtcgctggattcaaagtccagagtgctaaccactacaccatagaacc 47587887  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 39569822 - 39569881
Alignment:
Q  18 agtcgaacccaggtcgctggattcaaagtccagagtgctaaccactacaccatagaaccc 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39569822 agtcgaacccaggtcgctggattcaaagtccagagtgctaaccactacaccatagaaccc 39569881  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 37502211 - 37502269
Alignment:
Q  18 agtcgaacccaggtcgctggattcaaagtccagagtgctaaccactacaccatagaacc 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37502211 agtcgaacccaggtcgctggattcaaagtccagagtgctaaccactacaccatagaacc 37502269  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 36638427 - 36638485
Alignment:
Q  18 agtcgaacccaggtcgctggattcaaagtccagagtgctaaccactacaccatagaacc 76  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36638427 agtcgaacccaggtcgttggattcaaagtccagagtgctaaccactacaccatagaacc 36638485  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 26336185 - 26336126
Alignment:
Q  18 agtcgaacccaggtcgctggattcaaagtccagagtgctaaccactacaccatagaaccc 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26336185 agtcgaacccaggtcgctggattcaaagtccagagtgctaaccactacaccatagaaccc 26336126  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 31833557 - 31833499
Alignment:
Q  18 agtcgaacccaggtcgctggattcaaagtccagagtgctaaccactacaccatagaacc 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31833557 agtcgaacccaggtcgctggattcaaagtccagagtgctaaccactacaccatagaacc 31833499  T

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Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 18329017 - 18328959
Alignment:
Q  18 agtcgaacccaggtcgctggattcaaagtccagagtgctaaccactacaccatagaacc 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18329017 agtcgaacccaggtcgctggattcaaagtccagagtgctaaccactacaccatagaacc 18328959  T

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Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 10444508 - 10444566
Alignment:
Q  18 agtcgaacccaggtcgctggattcaaagtccagagtgctaaccactacaccatagaacc 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10444508 agtcgaacccaggtcgctggattcaaagtccagagtgctaaccactacaccatagaacc 10444566  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 16784455 - 16784397
Alignment:
Q  18 agtcgaacccaggtcgctggattcaaagtccagagtgctaaccactacaccatagaacc 76  Q
    |||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  16784455 agtcaaacccaggtcattggattcaaagtccagagtgctaaccactacaccatagaacc 16784397  T

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