View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10330_high_37 (Length: 236)
Name: NF10330_high_37
Description: NF10330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10330_high_37 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 293030 - 293225
Alignment:
| Q |
13 |
cagagagcacagattcccaactcgccatggcgagttctagctcacccggcgacttgtgacaatctagaattctgcagaaaacgtatttttgcataaaagc |
112 |
Q |
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| T |
293030 |
cagagagcacagattcccaactcgccatggcgagttctagctcacccggcgacttgtgacagtctagaattctgcagaaaacgtatttttgcataaaagc |
293129 |
T |
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| Q |
113 |
ctcaatttcaagcatcataaggtacatggcacttccagaacac----nnnnnnncagtaggaattataatacatgacattattaatatgttcttga |
204 |
Q |
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| T |
293130 |
ctcaattttaagcatcataaggtacctagcacttccagaacacaaaaaaaaaaacagtaggaattataatacatgacattattaacatgttcttga |
293225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 37985330 - 37985464
Alignment:
| Q |
24 |
gattcccaactcgccatggcgagttctagctcacccggcgacttgtgacaatctagaattctgcagaaaacgtatttttgcat---aaaagcctcaattt |
120 |
Q |
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| T |
37985330 |
gattcccaactcgccatggcgagttctagctcgcccgacgagttgtgacagtccagaattctgcagaaaacgtatttttgcataaaaaaaacctcaattt |
37985429 |
T |
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| Q |
121 |
caagcatcataaggtacatggcacttccagaacac |
155 |
Q |
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| T |
37985430 |
caagcatcataaggtacctgatacttccagaacac |
37985464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 25239484 - 25239533
Alignment:
| Q |
43 |
cgagttctagctcacccggcgacttgtgacaatctagaattctgcagaaa |
92 |
Q |
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| T |
25239484 |
cgagttctagctcgcccggcgagttgtgacagtccagaattctgcagaaa |
25239533 |
T |
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