View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10330_high_8 (Length: 408)
Name: NF10330_high_8
Description: NF10330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10330_high_8 |
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| [»] scaffold0029 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 393
Target Start/End: Original strand, 48446397 - 48446770
Alignment:
| Q |
19 |
gtaattcatttaacaattgtgttttttagttctccaacttctatgctctccccacactatttaatacaaacacacagacacaggaatcagacgcagagag |
118 |
Q |
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| T |
48446397 |
gtaattcatttaacaattgtgttttttagttctccaacttctatgctctccccacactatttaatgcaaacacacagacacaggaatcagacgcagagag |
48446496 |
T |
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| Q |
119 |
agcgaggtttcgctgtgtgtatggtcacttgcatttcattattttattagtagtcattttgcatctgaatctcatttcagtataccaattgtcacactat |
218 |
Q |
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| T |
48446497 |
agcgaggtttcgctgtgtgtgtggtcacttgcatttcattattttattagtagtcattttgcatctgaatctcatctcagtataccaattgtcacactat |
48446596 |
T |
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| Q |
219 |
atataaatnnnnnnnggagagagacacaaacaagattctccaatatacacaccattggttaaaaccttagacaccattgtcggagcttgatcatattgtt |
318 |
Q |
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| T |
48446597 |
atataaat-aaaaaaggagagagacacaaacaagattctccaatatacacaccattggttaaaaccttagacaccattgtcggagcttgatcatattgtt |
48446695 |
T |
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| Q |
319 |
atttcatctgtgcatgttctgttcttttggggagatacttacttctgttctgttacattcattcatttcttgcct |
393 |
Q |
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| T |
48446696 |
atttcatctgagcatgttctgttcttttggggagatacttacttctgttcttttacattcattcatttcttgcct |
48446770 |
T |
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Target: scaffold0029 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 55086 - 55142
Alignment:
| Q |
80 |
taatacaaacacacagacacaggaatcagacgcagagagagcgaggtttcgctgtgt |
136 |
Q |
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| T |
55086 |
taatacaaacacacagacacaagaatcagacgcagagagagcgaggtttcgctgtgt |
55142 |
T |
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