View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10330_high_9 (Length: 403)
Name: NF10330_high_9
Description: NF10330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10330_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 47 - 384
Target Start/End: Original strand, 25273138 - 25273475
Alignment:
| Q |
47 |
aaggagccaaaatcatagaaaagaacaagtttctcttaatctctctcgccaccctctccaaccaccacactcagcattcaatccatcatcatcatcaaaa |
146 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25273138 |
aaggagccaaaataatagaaaagaacaagtttctcttaatctctctcgccaccctctccaaccaccacactcagcattcaatccatcatcatcatcaaaa |
25273237 |
T |
|
| Q |
147 |
caaaaacaaaggccatatgaaatatttgtttgagagagaaaggaaatcatnnnnnnntaagataggagaagaagtaggagctagctacagcatcactgca |
246 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25273238 |
caaaaacaaatgccatatgaaatatttgtttgagagagaaaggaaatcataaaaaaataagataggagaagaagtaggagctagctacagcatcactgca |
25273337 |
T |
|
| Q |
247 |
accacacactgatccaacatcgcaacttccaccattagcaaatcattctctcttgctatccactctggcgacctcgctctccacaccgtcgtcgttttaa |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
25273338 |
accacacactgatccaacatcgcaacttccaccattagcaaatcattctctcttgctatccactctggcgacctcgctctccacgccatcgtcgttttaa |
25273437 |
T |
|
| Q |
347 |
ctttaaactaaccgctgacaaacacttccaccatccca |
384 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
25273438 |
ctttaaacttaccgctgacaaacacttccaccatccca |
25273475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University