View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10330_low_10 (Length: 428)
Name: NF10330_low_10
Description: NF10330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10330_low_10 |
 | |
|
| [»] scaffold0028 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0028 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Complemental strand, 123009 - 122616
Alignment:
| Q |
18 |
tcatacatctatgttgcaacaaacatttgtcaacataccaattctaaatatgttactaagacaatcttttaannnnnnnnnagaaggatcaagctctccc |
117 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
123009 |
tcatacatctatgttacaacaaacatttgtcaacataccaattctaaatatgttactaagacaatcttttaatttttttt-agaaggatcaagctctccc |
122911 |
T |
|
| Q |
118 |
tattcagaatgttggtacaggcgaggtaaattatatattttgcttttacatcatataaaatgtattcttatgtatttaatatttgttaacacaacatttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
122910 |
tattcagaatgttggtacaggcgaggtaaattatatattttgcttt-acatcatataaaatgtattcttacatatttaatatttgttaacacaacatttt |
122812 |
T |
|
| Q |
218 |
tggaatttgaattttgtcaggtaggtttgtcccaaatgccagattataccactctttctcagctggacatcttatcggtcatcccaactgtaagtttatc |
317 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
122811 |
tggaatttgaattttgtcaggtaggttcgtcccaaatgccagattataccactctttctcagctggacatcttatcggtcatcccaactgtaagtttatc |
122712 |
T |
|
| Q |
318 |
aaatgtctttgttttactatatccgtcatatttttccatcgagcgttaatttcacattcactatgtgcttgcagccaccgctatctgctgtctgtg |
413 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
122711 |
aaatgtctttgttttactatatcagtcatatttttccatcgagcattaatttcacattcactatgtgcttgcagccactgctatctgctgtctgtg |
122616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University