View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10330_low_15 (Length: 386)
Name: NF10330_low_15
Description: NF10330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10330_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 11 - 370
Target Start/End: Original strand, 5625389 - 5625748
Alignment:
| Q |
11 |
cataggaaaaaatggttgtgttgttgaagcttcttcagtaccattcttaaagaaatgagtgctttcaggtacttttgcttgatgtgtaagaaatttttga |
110 |
Q |
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| T |
5625389 |
cataggaaaaagtggttgtgttgttgaagcttcttcagtaccattcttaaagaaatgagtactttcaggtacttttgcttgatgtgtaagaaatttttga |
5625488 |
T |
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| Q |
111 |
cctaatgaaggtgcacctttaccccaaaatggaaaaagttcatcaccaaaagccatacggtaacataaaagtacccaacatattaatactgatgcataag |
210 |
Q |
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| T |
5625489 |
cctaatgaaggtgcacctttaccccaaaatggaaaaagttcatcaccaaaagccatacggtaacataaaagaacccaacatattagcactgatgcataag |
5625588 |
T |
|
| Q |
211 |
cataaagtgccatgaaagctgaattcatagcccatttctttttgaccatacttgcatagagaattacaagacctggcatgctttgtaggccaactagggt |
310 |
Q |
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| T |
5625589 |
cataaagtgccatgaaagctgaattcatagcccatttctttttgaccatacttgcatagagaattacaagacctggcatgctttgtagaccaactagggt |
5625688 |
T |
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| Q |
311 |
tgatgctgtcatttgccatgagttgtctcctttgtttagccattgtggtgatgaaggaag |
370 |
Q |
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| T |
5625689 |
tgatgctgtcatttgccatgagttgtctcctttgtttagccattgtggtgatgaaggaag |
5625748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 98 - 363
Target Start/End: Original strand, 25671268 - 25671533
Alignment:
| Q |
98 |
aagaaatttttgacctaatgaaggtgcacctttaccccaaaatggaaaaagttcatcaccaaaagccatacggtaacataaaagtacccaacatattaat |
197 |
Q |
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| T |
25671268 |
aagaaatttttgtcctaaagccggtgcacctttaccccagaaaggtaaaagttcatcaccaaaagccattctataagcaacaagaacccaacagattaat |
25671367 |
T |
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| Q |
198 |
actgatgcataagcataaagtgccatgaaagctgaattcatagcccatttctttttgaccatacttgcatagagaattacaagacctggcatgctttgta |
297 |
Q |
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|||| |||| ||||||| |||||||||||||||||||||| |||||||||||||| || || ||||||||||||||||| || |||||||||||||||| |
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| T |
25671368 |
actgctgcaaaagcatatagtgccatgaaagctgaattcactgcccatttctttttcactatgcttgcatagagaattactagtcctggcatgctttgta |
25671467 |
T |
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| Q |
298 |
ggccaactagggttgatgctgtcatttgccatgagttgtctcctttgtttagccattgtggtgatg |
363 |
Q |
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| T |
25671468 |
aaccaactagtgttgctgctgtcatttgccatgcgttgtctcctttgtttaaccattctggtgatg |
25671533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 219 - 348
Target Start/End: Original strand, 39726850 - 39726979
Alignment:
| Q |
219 |
gccatgaaagctgaattcatagcccatttctttttgaccatacttgcatagagaattacaagacctggcatgctttgtaggccaactagggttgatgctg |
318 |
Q |
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| T |
39726850 |
gccatgaaagcagagtttacagcccatttctttttcactatgctgccatagaggataactagtcctggcatgctttgaattccaacaagggtagctgata |
39726949 |
T |
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| Q |
319 |
tcatttgccatgagttgtctcctttgttta |
348 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
39726950 |
tcatttgccatgagttgtctcctttgttta |
39726979 |
T |
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