View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10330_low_18 (Length: 369)

Name: NF10330_low_18
Description: NF10330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10330_low_18
NF10330_low_18
[»] chr8 (4 HSPs)
chr8 (212-363)||(30702690-30702841)
chr8 (79-164)||(30702889-30702974)
chr8 (21-80)||(30702995-30703054)
chr8 (300-361)||(18004766-18004827)
[»] chr3 (1 HSPs)
chr3 (256-363)||(11294693-11294800)
[»] chr2 (2 HSPs)
chr2 (256-363)||(3250507-3250614)
chr2 (256-363)||(35431064-35431171)
[»] chr4 (1 HSPs)
chr4 (79-164)||(4636089-4636173)
[»] chr5 (1 HSPs)
chr5 (21-62)||(35749888-35749929)
[»] chr6 (1 HSPs)
chr6 (20-80)||(6470090-6470149)


Alignment Details
Target: chr8 (Bit Score: 140; Significance: 3e-73; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 212 - 363
Target Start/End: Complemental strand, 30702841 - 30702690
Alignment:
Q  212 ccgctgattctaagaaaccttagctattgctcattaaaccacccgtggatgtggttccatgaagtcgatatgtcacctactaatctgatgtgacatattt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  30702841 ccgctgattctaagaaaccttagctattgctcattaaaccacccgtggatgtggttccatggagtcgatatgtcacctactaatccgatgtgacatattt 30702742  T
Q  312 ggcagtgtttggaacaagatttataggtggctaggtatttatttcatctctc 363  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30702741 ggcagtgtttggaacaagatttataggtggctagctatttatttcatctctc 30702690  T

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Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 79 - 164
Target Start/End: Complemental strand, 30702974 - 30702889
Alignment:
Q  79 tcgaaatatccaagttaaggtgagaaaagatttacaagacaatatatatgtgatttgttgaactaactttcatatatgcaatgcaa 164  Q
    |||||||||||||||||||||||||||||||| |||| ||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  30702974 tcgaaatatccaagttaaggtgagaaaagattaacaaaacaatgtatgtgtgatttgttgaactaactttcatatatgcaatgcaa 30702889  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 30703054 - 30702995
Alignment:
Q  21 tcagttatttcttattatgtatatatagaagtttttcatagggaacaagagtcacaaatc 80  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||    
T  30703054 tcagttatttcttattgtgtatatatagaagtttttcatagggaacaagggtcaaaaatc 30702995  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 361
Target Start/End: Complemental strand, 18004827 - 18004766
Alignment:
Q  300 tgtgacatatttggcagtgtttggaacaagatttataggtggctaggtatttatttcatctc 361  Q
    ||||| |||||||||||| ||||| ||| | ||||| ||||||| |||||||||||||||||    
T  18004827 tgtgatatatttggcagtatttggcacatggtttatcggtggcttggtatttatttcatctc 18004766  T

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Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 256 - 363
Target Start/End: Original strand, 11294693 - 11294800
Alignment:
Q  256 gtggatgtggttccatgaagtcgatatgtcacctactaatctgatgtgacatatttggcagtgtttggaacaagatttataggtggctaggtatttattt 355  Q
    ||||||||| ||||||| |||||||||||||||| ||| |  |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  11294693 gtggatgtgcttccatggagtcgatatgtcaccttctacttcgatgtgacatctttggcaatgtttggaacaagatttataggtggctaggtatttattt 11294792  T
Q  356 catctctc 363  Q
    ||||||||    
T  11294793 catctctc 11294800  T

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Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 256 - 363
Target Start/End: Complemental strand, 3250614 - 3250507
Alignment:
Q  256 gtggatgtggttccatgaagtcgatatgtcacctactaatctgatgtgacatatttggcagtgtttggaacaagatttataggtggctaggtatttattt 355  Q
    |||| ||||| |||||| |||||| |||||||||  ||||| | |||||||| |||||||  |||||| ||| | ||||| ||||||| |||||||||||    
T  3250614 gtggttgtggctccatggagtcgacatgtcaccttttaatccgttgtgacatctttggcaaggtttggtacagggtttatcggtggctcggtatttattt 3250515  T
Q  356 catctctc 363  Q
    ||||||||    
T  3250514 catctctc 3250507  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 363
Target Start/End: Original strand, 35431064 - 35431171
Alignment:
Q  256 gtggatgtggttccatgaagtcgatatgtcacctactaatctgatgtgacatatttggcagtgtttggaacaagatttataggtggctaggtatttattt 355  Q
    |||| ||||| | |||| ||||||  |||||||| || ||| |||||||||| |||||||||||||||   | | ||||| ||||||| |||||||||||    
T  35431064 gtggttgtggctacatggagtcgacgtgtcaccttctgatccgatgtgacatctttggcagtgtttggtgtagggtttatcggtggcttggtatttattt 35431163  T
Q  356 catctctc 363  Q
    ||||||||    
T  35431164 catctctc 35431171  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 164
Target Start/End: Complemental strand, 4636173 - 4636089
Alignment:
Q  79 tcgaaatatccaagttaaggtgagaaaagatttacaagacaatatatatgtgatttgttgaactaactttcatatatgcaatgcaa 164  Q
    ||||| |||||||||||  ||||||||||| | |||||||||||||| ||||||||| || || || |||||| |||||| |||||    
T  4636173 tcgaactatccaagttatcgtgagaaaagagtaacaagacaatatatgtgtgatttgatgtaccaa-tttcatttatgcactgcaa 4636089  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 35749929 - 35749888
Alignment:
Q  21 tcagttatttcttattatgtatatatagaagtttttcatagg 62  Q
    ||||||||||||  | ||||||||||||||||||||||||||    
T  35749929 tcagttatttctattcatgtatatatagaagtttttcatagg 35749888  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 6470090 - 6470149
Alignment:
Q  20 atcagttatttcttattatgtatatatagaagtttttcatagggaacaagagtcacaaatc 80  Q
    |||||||||||||| |  ||||||||||| ||||||||||||| || ||| ||||||||||    
T  6470090 atcagttatttctt-tggtgtatatatagtagtttttcataggaaaaaagggtcacaaatc 6470149  T

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