View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10330_low_22 (Length: 315)
Name: NF10330_low_22
Description: NF10330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10330_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 7e-83; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 41017666 - 41017467
Alignment:
| Q |
18 |
agtataatttagttgtttatccaaacagtgttaaggctgggacatgattggtgctgttttgacnnnnnnnnnncatgagaaaacaaatatgattatgtat |
117 |
Q |
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| T |
41017666 |
agtataatttagttgtttatccaaacagtgttaaggctgggacatgattggtgctggtttgacaaaaaaaa--catgagaaaacaaatatgattatgtat |
41017569 |
T |
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| Q |
118 |
aaaaactgactcaacccaatttgcattaaaaaccggtgaaaactgtatccatttcattgaaaccagtaaaaacctaatttttagcaccactgatttttcg |
217 |
Q |
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| T |
41017568 |
aaaaactgactcaaccca-tttgcattaaaaaccggtgaaaactgtatccatttcattgaaaccagtaaaaacctaatttttagcaccactgatttttcg |
41017470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 41016119 - 41016024
Alignment:
| Q |
18 |
agtataatttagttgtttatccaaacagtgttaaggctgggacatgattggtgctgttttgacnnnnnnnnnncatgagaaaacaaatatgattatgt |
115 |
Q |
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| T |
41016119 |
agtataatttagttgtttatccaaacagtgttaagactgggacatga--ggtgctggtttgacaaaaaaaaaacaagagaaaacaaatatgattatgt |
41016024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 269 - 302
Target Start/End: Complemental strand, 41017412 - 41017379
Alignment:
| Q |
269 |
aaagatcttcatcttctttggtttcctccttcct |
302 |
Q |
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| T |
41017412 |
aaagatcttcatcttctttggtttcctccttcct |
41017379 |
T |
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