View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10330_low_23 (Length: 314)

Name: NF10330_low_23
Description: NF10330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10330_low_23
NF10330_low_23
[»] chr4 (5 HSPs)
chr4 (99-296)||(30720054-30720247)
chr4 (99-296)||(30892195-30892388)
chr4 (99-291)||(30881112-30881300)
chr4 (100-228)||(16867927-16868058)
chr4 (99-236)||(44731545-44731685)
[»] chr5 (1 HSPs)
chr5 (100-254)||(8898731-8898888)
[»] chr8 (1 HSPs)
chr8 (1-61)||(15998089-15998149)
[»] chr1 (1 HSPs)
chr1 (1-61)||(6111175-6111235)
[»] chr2 (1 HSPs)
chr2 (153-230)||(31726704-31726781)
[»] chr3 (1 HSPs)
chr3 (164-226)||(54277046-54277108)


Alignment Details
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 99 - 296
Target Start/End: Complemental strand, 30720247 - 30720054
Alignment:
Q  99 tcatatgtgctcctcaatcacaaagacaagtagttttaagtatgaaaatgcaagtgttccatcaacagtggattggtgaaagaaaggagcagtaacacca 198  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30720247 tcatatgtgctcctcaatcacaaagacaagtacttttaagtatgaaaatgcaagtgttccatcaacagtggattggagaaagaaaggagcagtaacacca 30720148  T
Q  199 gtgaagaaccaaggtcaatgtggtaagtgtctatctaacatgtaatgcattcaattacatactatgcatgtgatcaaatattgaattgtcattgaact 296  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||    |||||||||||||||||||||||||| ||||    
T  30720147 gtgaagaaccaaggtcaatgtggtaagtgtctatctattatgtaatgcattcaattacaaact----atgtgatcaaatattgaattgtcattaaact 30720054  T

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Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 99 - 296
Target Start/End: Original strand, 30892195 - 30892388
Alignment:
Q  99 tcatatgtgctcctcaatcacaaagacaagtagttttaagtatgaaaatgcaagtgttccatcaacagtggattggtgaaagaaaggagcagtaacacca 198  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30892195 tcatatgtgctcctcaatcacaaagacaagtacttttaagtatgaaaatgcaagtgttccatcaacagtggattggagaaagaaaggagcagtaacacca 30892294  T
Q  199 gtgaagaaccaaggtcaatgtggtaagtgtctatctaacatgtaatgcattcaattacatactatgcatgtgatcaaatattgaattgtcattgaact 296  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||    |||||||||||||||||||||||||| ||||    
T  30892295 gtgaagaaccaaggtcaatgtggtaagtgtctatctattatgtaatgcattcaattacaaact----atgtgatcaaatattgaattgtcattaaact 30892388  T

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Target: chr4; HSP #3
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 99 - 291
Target Start/End: Original strand, 30881112 - 30881300
Alignment:
Q  99 tcatatgtgctcctcaatcacaaagacaagtagttttaagtatgaaaatgcaagtgttccatcaacagtggattggtgaaagaaaggagcagtaacacca 198  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30881112 tcatatgtgctcctcaatcacaaagacaagtacttttaagtatgaaaatgcaagtgttccatcaacagtggattggagaaagaaaggagcagtaacacca 30881211  T
Q  199 gtgaagaaccaaggtcaatgtggtaagtgtctatctaacatgtaatgcattcaattacatactatgcatgtgatcaaatattgaattgtcatt 291  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||    ||||||||||||||||||||||||||    
T  30881212 gtgaagaaccaaggtcaatgtggtaagtgtctatctattatgtaatgcattcaattacaaact----atgtgatcaaatattgaattgtcatt 30881300  T

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Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 100 - 228
Target Start/End: Complemental strand, 16868058 - 16867927
Alignment:
Q  100 catatgtgctcctcaatcacaaagacaagtagttttaagtatgaaaatgcaagtg---ttccatcaacagtggattggtgaaagaaaggagcagtaacac 196  Q
    ||||||||||| |||||||||| |||||||| |||||||||||||||||||||||   |||||||  | ||||||||| | |||||||||||||| ||||    
T  16868058 catatgtgctcttcaatcacaaggacaagtacttttaagtatgaaaatgcaagtgcaattccatcctcggtggattggaggaagaaaggagcagttacac 16867959  T
Q  197 cagtgaagaaccaaggtcaatgtggtaagtgt 228  Q
    | |||||||||||||| |||||||||| ||||    
T  16867958 ctgtgaagaaccaaggacaatgtggtacgtgt 16867927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 99 - 236
Target Start/End: Complemental strand, 44731685 - 44731545
Alignment:
Q  99 tcatatgtgctcctcaatcacaaagacaagtagttttaagtatgaaaatgcaagtg---ttccatcaacagtggattggtgaaagaaaggagcagtaaca 195  Q
    ||||||||||||||||||| | || |||| || ||||||||||||||||| |||||   | || || |||||||||||| | |||||||||||||| |||    
T  44731685 tcatatgtgctcctcaatcgcgaaaacaactacttttaagtatgaaaatgtaagtgcaatcccgtccacagtggattggaggaagaaaggagcagtgaca 44731586  T
Q  196 ccagtgaagaaccaaggtcaatgtggtaagtgtctatctaa 236  Q
    || |||||||||||||||||||||||||||| || ||||||    
T  44731585 cctgtgaagaaccaaggtcaatgtggtaagtatcaatctaa 44731545  T

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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 100 - 254
Target Start/End: Original strand, 8898731 - 8898888
Alignment:
Q  100 catatgtgctcctcaatcacaaagacaagtagttttaagtatgaaaatgcaagtg---ttccatcaacagtggattggtgaaagaaaggagcagtaacac 196  Q
    ||||||||||| ||||||| || ||||| || ||||||||||||||||| |||||   | ||||| |||||||||||| | |||||||||||||| ||||    
T  8898731 catatgtgctcatcaatcataaggacaactacttttaagtatgaaaatgtaagtgcaatcccatctacagtggattggaggaagaaaggagcagtgacac 8898830  T
Q  197 cagtgaagaaccaaggtcaatgtggtaagtgtctatctaacatgtaatgcattcaatt 254  Q
    | |||||||||||||| |||||||||| || ||||||||| |  ||||||||| ||||    
T  8898831 ctgtgaagaaccaaggccaatgtggtacgtttctatctaaaaactaatgcatttaatt 8898888  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 15998149 - 15998089
Alignment:
Q  1 aaaatgaatgaagaaaatatgtggtagtttctagaccgtgcttgtattttatcattatttt 61  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  15998149 aaaatgaatgaaggaaatatgtggtagcttctagaccgtgcttgtattttatcattatttt 15998089  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 6111175 - 6111235
Alignment:
Q  1 aaaatgaatgaagaaaatatgtggtagtttctagaccgtgcttgtattttatcattatttt 61  Q
    ||||||||||||| ||||||||| ||| |||||||||||| |||| |||||||||||||||    
T  6111175 aaaatgaatgaaggaaatatgtgctagcttctagaccgtgtttgtgttttatcattatttt 6111235  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 31726704 - 31726781
Alignment:
Q  153 tgttccatcaacagtggattggtgaaagaaaggagcagtaacaccagtgaagaaccaaggtcaatgtggtaagtgtct 230  Q
    |||||||||  ||||||||||| |  || |||||||||| ||||| ||||| || ||||| |||||||||||||||||    
T  31726704 tgttccatctgcagtggattggaggcaggaaggagcagtgacacctgtgaaaaatcaaggccaatgtggtaagtgtct 31726781  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 54277046 - 54277108
Alignment:
Q  164 cagtggattggtgaaagaaaggagcagtaacaccagtgaagaaccaaggtcaatgtggtaagt 226  Q
    |||| |||||| |||||||||| || ||||| || || ||||| |||||||||||||||||||    
T  54277046 cagttgattggagaaagaaaggtgctgtaaccccggtcaagaatcaaggtcaatgtggtaagt 54277108  T

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