View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10330_low_24 (Length: 311)
Name: NF10330_low_24
Description: NF10330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10330_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 1603669 - 1603372
Alignment:
| Q |
1 |
ataataacaacaaaaaagagttatgcatatatactttgaagaagcaatgtccttgactcagggtcttgagtagcggttgcggcgctaacaatggataata |
100 |
Q |
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| T |
1603669 |
ataataacaacaaaaaagagttatgcatatatactttgaagaagcaatgtccttgactcagggtcttgagtagcggttgcggcgataacaatggataaga |
1603570 |
T |
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| Q |
101 |
cgagtcctctccttccaaattccatgttggtgcttctcaaagttgggtttgcttgttttctattatgaactgcttgaacattggatgatgtatacatgtt |
200 |
Q |
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| T |
1603569 |
cgagtcctctccttccaaattccatgttggtgcttctcaaagttgggtttgcttgttttctattatgaactgcttgaacattggatgatgtatacttgtt |
1603470 |
T |
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| Q |
201 |
taccgtaactgttagtgccattaacatggtttgccctataaaactcatcgcctcttctctttttagtttgtttaataacttatcctaaaggatgatga |
298 |
Q |
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| T |
1603469 |
taccgtaactgttagtgccattaacatggtttgccctataaaactcatcgcctcttctctttttagtttgtttaataacttatcctaaaggataatga |
1603372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 10 - 298
Target Start/End: Complemental strand, 48007039 - 48006751
Alignment:
| Q |
10 |
acaaaaaagagttatgcatatatactttgaagaagcaatgtccttgactcagggtcttgagtagcggttgcggcgctaacaatggataatacgagtcctc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||| |||||||||| |
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| T |
48007039 |
acaaaaaagagttatgcatatatactttgaagaagcaatgtccttgactcagggtcttgagttgcggttgcggcgataacagtggataagacgagtcctc |
48006940 |
T |
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| Q |
110 |
tccttccaaattccatgttggtgcttctcaaagttgggtttgcttgttttctattatgaactgcttgaacattggatgatgtatacatgtttaccgtaac |
209 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||| |
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| T |
48006939 |
tccttccaaattccaagttggtgcttctcaaagttgggtttgcttgttttctattatgaactgcttgtacattggatgatgcatacttgtttaccgtaac |
48006840 |
T |
|
| Q |
210 |
tgttagtgccattaacatggtttgccctataaaactcatcgcctcttctctttttagtttgtttaataacttatcctaaaggatgatga |
298 |
Q |
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| T |
48006839 |
tgttagtgccattaacatggtttgccctatagaactcatcgcctcttctctttttagtttgcttaatagcttatcctaaaggataatga |
48006751 |
T |
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