View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10330_low_27 (Length: 284)
Name: NF10330_low_27
Description: NF10330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10330_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 274
Target Start/End: Original strand, 8876729 - 8876985
Alignment:
| Q |
19 |
accatttacattgcataggacaatttgtttgggtgaatcaagatgctatagaggtagtttgctgatatgcacagtttatgtgcttgctgacatgttagga |
118 |
Q |
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| T |
8876729 |
accatttacaatgcataggacaatttgtttgggtgaatcaagatgctatagaggtagtttgctgatatgcacagtttatgtgcttgctgacatgttagga |
8876828 |
T |
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| Q |
119 |
accaaatgctgtctacaaaagatatatgtatgtgactaatacttatacatatattgcaga-nnnnnnngactgcttttgccaatgcatttcatgctctac |
217 |
Q |
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| T |
8876829 |
accaaatgctgtctacaaaagatatatgtatgtgactaatacttatacatatattgcagattttttttgactgcttttgccaatgcatttcatgctctac |
8876928 |
T |
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| Q |
218 |
agctactcaaaattcctgaatccaggttagactatgatgtcattcataatgcctttg |
274 |
Q |
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| T |
8876929 |
agctactcaaaattcctgaatccaggttagactatgatgtcattcataatgcctttg |
8876985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 9394231 - 9393978
Alignment:
| Q |
19 |
accatttacattgcataggacaatttgtttgggtgaatcaaga---tgctatagaggtagtttgctgatatgcacagtttatgtgcttgctgacatgtta |
115 |
Q |
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| T |
9394231 |
accatttacaatgcatattacaatttgtttgggtgaatcaagaagatgctatagaggtagtttgctgatatgcacaatttatgtgcttgctgatatgata |
9394132 |
T |
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| Q |
116 |
ggaaccaaatgctgtctacaaaagatatatgtatgtgactaatacttatacatatattgcagannnnnnngactgcttttgccaatgcatttcatgctct |
215 |
Q |
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| T |
9394131 |
ggaaccaaatgctgtctacaaaagatatatgtatgtgactaatacttatacatatattgtagatttta---actgcttttgccaatgcatctcatgcact |
9394035 |
T |
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| Q |
216 |
acagctactcaaaattcctgaatccaggttagactatgatgtcattcataatgcctt |
272 |
Q |
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||||| ||||||| |||||||||||||||||||||||| ||| |||| ||||||||| |
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| T |
9394034 |
acagccactcaaagttcctgaatccaggttagactatgttgttattcttaatgcctt |
9393978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 248
Target Start/End: Complemental strand, 336224 - 336119
Alignment:
| Q |
142 |
atatgtatgtgactaatacttatacatatatt--gcagannnnnnngactgcttttgccaatgcatttcatgctctacagctactcaaaattcctgaatc |
239 |
Q |
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|||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||| || |
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| T |
336224 |
atatgtatgtgactaatactcctacatatattttgcagatttt---gactgcttttgccaatgcatttcatgctctacagccactcaaagttcctggatt |
336128 |
T |
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| Q |
240 |
caggttaga |
248 |
Q |
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| T |
336127 |
caggttaga |
336119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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