View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10330_low_28 (Length: 283)
Name: NF10330_low_28
Description: NF10330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10330_low_28 |
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| [»] scaffold0290 (1 HSPs) |
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| [»] scaffold0022 (1 HSPs) |
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| [»] scaffold0343 (2 HSPs) |
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| [»] scaffold0031 (1 HSPs) |
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Alignment Details
Target: scaffold0290 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0290
Description:
Target: scaffold0290; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 278
Target Start/End: Complemental strand, 7706 - 7445
Alignment:
| Q |
19 |
gcagccacaacaccaacaccaaaattgattaccccgaccagcaataatgtcgcagaacgaggtagaagaagcatgacttactaaagaatatcattctttt |
118 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7706 |
gcagccacaacaccaacaccaaaattgattaccctgaccagcaataatgtcgcagaatgaggtagaagaagcatgacttactaaagaatatcattctttt |
7607 |
T |
|
| Q |
119 |
cactttgcacttgataattgtcatatctcaatttttgatctaagatcctatatttatacgccttttgacaccgaatattctttgatttttcagagaaaaa |
218 |
Q |
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|| |||||| ||||||||||||||| | |||||||||| |||| |||||| ||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7606 |
cattttgcatttgataattgtcataccccaatttttgacctaaaatcctacattcatacgccttttgacattgaatattctttgatttttcagagaaaaa |
7507 |
T |
|
| Q |
219 |
ttcggt--agagttattttaatatacctcatttttattccaatttcgggccttcttctcact |
278 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
7506 |
ttcggtagagagttattttaaaatacctcatttttattccaatttcgggccctcttctcact |
7445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 272
Target Start/End: Complemental strand, 18981526 - 18981268
Alignment:
| Q |
20 |
cagccacaacaccaacaccaaaattgattaccccgaccagcaataatgtcgcaga--acgaggtagaagaagcatgacttactaaagaatatcattcttt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
18981526 |
cagccacaacaccaacaccaaaattgattaccccgaccagcaataatgtcgcagagaatgaggtagaagatgcatgacttactaaagaatatcattcttt |
18981427 |
T |
|
| Q |
118 |
tcactttgcacttgataattgtcatatctcaatttttga--tctaagatcctatatttatacgccttttgacaccgaatattctttgatttttcagagaa |
215 |
Q |
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|||||||||||| ||||||||||||| |||||||||||| |||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
18981426 |
tcactttgcactagataattgtcatacctcaatttttgacctctaagatcctacattcatacgccttttgacactgaatattctttgatttttcagagaa |
18981327 |
T |
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| Q |
216 |
aaattcggtag--agttattttaatatacctcatttttattccaatttcgggccttctt |
272 |
Q |
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|||||| |||| ||||||||||| |||||||||||||||||| |||||||||| |||| |
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| T |
18981326 |
aaattcagtagaaagttattttaaaatacctcatttttattccgatttcgggccctctt |
18981268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 17879387 - 17879445
Alignment:
| Q |
194 |
tattctttgatttttcagagaaaaattcggt--agagttattttaatatacctcatttt |
250 |
Q |
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||||||||| ||||||| ||||||||||||| |||| |||||||| |||||||||||| |
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|
| T |
17879387 |
tattctttgctttttcaaagaaaaattcggtagagaggtattttaaaatacctcatttt |
17879445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 278
Target Start/End: Original strand, 148916 - 149038
Alignment:
| Q |
158 |
ctaagatcctatatttatacgccttttgacaccgaatattctttgatttttcagagaaaaattcggtagag--ttattttaatatacctcatttttattc |
255 |
Q |
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|||| |||||| ||| ||| | |||||||| | ||||| ||||||| ||||| ||||||||||||| |||| |||||||| ||| ||||||||| ||| |
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| T |
148916 |
ctaacatcctacattcatatgtcttttgaccctgaatagtctttgacttttcggagaaaaattcggcagagatgtattttaaaatatctcatttttgttc |
149015 |
T |
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| Q |
256 |
caatttcgggccttcttctcact |
278 |
Q |
| |
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| ||||||| || |||||||||| |
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| T |
149016 |
cgatttcggaccctcttctcact |
149038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0343 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0343
Description:
Target: scaffold0343; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 275
Target Start/End: Complemental strand, 4707 - 4567
Alignment:
| Q |
137 |
tgtcatatctcaatttttgatctaagatcctatatttatacgccttttgacaccgaatattctttgatttttcagagaaaaattcggtagagttat--tt |
234 |
Q |
| |
|
||||||| | |||||||||| |||| |||||| ||| ||||| | |||||| | ||||| ||||||| |||||| || || ||||| ||| ||| || |
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| T |
4707 |
tgtcataccccaatttttgacctaacatcctacattcatacgtcgtttgaccctgaatagtctttgacttttcaaaggcaatttcggcagacatatattt |
4608 |
T |
|
| Q |
235 |
taatatacctcatttttattccaatttcgggccttcttctc |
275 |
Q |
| |
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||| ||| |||||||||||||| |||||| ||||||||||| |
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| T |
4607 |
taaaatatctcatttttattccgatttcgagccttcttctc |
4567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0343; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 275
Target Start/End: Complemental strand, 4915 - 4775
Alignment:
| Q |
137 |
tgtcatatctcaatttttgatctaagatcctatatttatacgccttttgacaccgaatattctttgatttttcagagaaaaattcggtagagttat--tt |
234 |
Q |
| |
|
||||||| | |||||||||| |||| |||||| ||| ||||| | |||||| | ||||| ||||||| |||||| || || ||||| ||| ||| || |
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| T |
4915 |
tgtcataccccaatttttgacctaacatcctacattcatacgtcgtttgaccctgaatagtctttgacttttcaaaggcaatttcggcagacatatattt |
4816 |
T |
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| Q |
235 |
taatatacctcatttttattccaatttcgggccttcttctc |
275 |
Q |
| |
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||| ||| |||||||||||||| |||||| ||||||||||| |
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| T |
4815 |
taaaatatctcatttttattccgatttcgagccttcttctc |
4775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 251
Target Start/End: Original strand, 28277349 - 28277465
Alignment:
| Q |
137 |
tgtcatatctcaatttttgatctaagatcctatatttatacgccttttgacaccgaatattctttgatttttcagagaaaaattcggtagag--ttattt |
234 |
Q |
| |
|
||||||||| |||||| |||||||||||| | || | || || |||||| | ||||||||||||||||||| |||||| ||||| |||| ||||| |
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| T |
28277349 |
tgtcatatcctaattttggatctaagatcccactttcacactccctttgacccgaaatattctttgatttttcaaagaaaatttcggcagagaagtattt |
28277448 |
T |
|
| Q |
235 |
taatatacctcattttt |
251 |
Q |
| |
|
||| ||||||||||||| |
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|
| T |
28277449 |
taaaatacctcattttt |
28277465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 251
Target Start/End: Complemental strand, 23641777 - 23641665
Alignment:
| Q |
136 |
ttgtcatatctcaatttttgatctaagatcctatatttatacgccttttgacaccgaatattctttgatttttcagagaaaaattcggtagagttatttt |
235 |
Q |
| |
|
|||||||||| |||||||||| |||| |||||| ||||||||||| | | | || | ||| ||| ||||||| ||||||||||| ||| |||||| |
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|
| T |
23641777 |
ttgtcatatcccaatttttgagctaaaatcctacatttatacgcc---cggccctgatcagtctctgacttttcagtgaaaaattcggcagaagtatttt |
23641681 |
T |
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| Q |
236 |
aatatacctcattttt |
251 |
Q |
| |
|
|||| ||||||||||| |
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| T |
23641680 |
aatacacctcattttt |
23641665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 3917577 - 3917489
Alignment:
| Q |
192 |
aatattctttgatttttcagagaaaaattcgg--tagagttattttaatatacctcatttttattccaatttcgggccttcttctcact |
278 |
Q |
| |
|
|||||||| || ||||||||||||||||||| || || |||||||| ||||||||| ||||| |||||| || ||||||||||||| |
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|
| T |
3917577 |
aatattctctggcttttcagagaaaaattcggcataaaggtattttaaaatacctcatctttataccaattccgacccttcttctcact |
3917489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 253
Target Start/End: Original strand, 18909123 - 18909243
Alignment:
| Q |
135 |
attgtcatatctcaatttttgatctaagatcctatatttatacgccttttgacaccgaatattctttgatttttcagagaaaaattcggtag--agttat |
232 |
Q |
| |
|
||||||||| | |||||||||| |||||| |||| ||| |||| || | |||| | ||||||||||| ||||||||||||||||||| || | ||| |
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|
| T |
18909123 |
attgtcataccccaatttttgacctaagaacctacattcatacaccctctgacccaaaatattctttggcttttcagagaaaaattcggcagaaatgtat |
18909222 |
T |
|
| Q |
233 |
tttaatatacctcatttttat |
253 |
Q |
| |
|
||||| ||||||||| ||||| |
|
|
| T |
18909223 |
tttaaaatacctcatctttat |
18909243 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 266
Target Start/End: Complemental strand, 33771 - 33640
Alignment:
| Q |
137 |
tgtcatatctcaatttttgatctaagatcctatatttatacgccttttgacaccgaatattctttgatttttcagagaaaaattcggtaga--gttattt |
234 |
Q |
| |
|
||||||| | |||||||||| |||| |||||| ||| ||||| |||||| ||||| ||||||| |||||| || ||| ||||| ||| | ||||| |
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| T |
33771 |
tgtcataccccaatttttgacctaacatcctacattcatacgttgtttgacctagaatagtctttgacttttcaaaggaaatttcggcagataggtattt |
33672 |
T |
|
| Q |
235 |
taatatacctcatttttattccaatttcgggc |
266 |
Q |
| |
|
||| ||||||||||||| |||| ||||||||| |
|
|
| T |
33671 |
taaaatacctcatttttgttccgatttcgggc |
33640 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 14282195 - 14282256
Alignment:
| Q |
192 |
aatattctttgatttttcagagaaaaattcggt--agagttattttaatatacctcattttt |
251 |
Q |
| |
|
|||||||||||| |||||| |||||| |||||| |||| |||||||| ||||||||||||| |
|
|
| T |
14282195 |
aatattctttgacttttcaaagaaaatttcggtagagaggtattttaaaatacctcattttt |
14282256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 22961888 - 22961835
Alignment:
| Q |
225 |
agagttattttaatatacctcatttttattccaatttcgggccttcttctcact |
278 |
Q |
| |
|
|||| |||||||| ||||||||||||| |||| || ||||||| |||||||||| |
|
|
| T |
22961888 |
agaggtattttaaaatacctcatttttgttccgatatcgggccctcttctcact |
22961835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 265
Target Start/End: Complemental strand, 38227886 - 38227810
Alignment:
| Q |
191 |
gaatattctttgatttttcagagaaaaattcgg--tagagttattttaatatacctcatttttattccaatttcggg |
265 |
Q |
| |
|
||||||||| ||| ||||||| ||||||||||| |||| || ||||| ||||||||||||| || |||||||||| |
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|
| T |
38227886 |
gaatattctctgacttttcagtgaaaaattcggcagagaggtactttaaaatacctcatttttgtttcaatttcggg |
38227810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 278
Target Start/End: Original strand, 8657548 - 8657691
Alignment:
| Q |
137 |
tgtcatatctcaatttttgatctaagatcctatatttatacgccttttgacaccgaatattctttgatttttcagagaaaaattcgg--tagagttattt |
234 |
Q |
| |
|
||||||| | |||||||||| |||||| |||| ||| |||| || |||||| | |||||||| || |||| ||| |||||||||| || || ||||| |
|
|
| T |
8657548 |
tgtcataccccaatttttgacctaagaacctacattcatacaccctttgacccataatattctctggctttttagaaaaaaattcggcataaaggtattt |
8657647 |
T |
|
| Q |
235 |
taatatacctcatttttattccaatttcgggccttcttctcact |
278 |
Q |
| |
|
||| ||||||||| ||| | || ||| || ||||||||||||| |
|
|
| T |
8657648 |
taaaatacctcatctttgtaccgattccgacccttcttctcact |
8657691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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