View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10330_low_3 (Length: 560)
Name: NF10330_low_3
Description: NF10330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10330_low_3 |
 | |
|
| [»] scaffold0097 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 12 - 542
Target Start/End: Complemental strand, 21262783 - 21262253
Alignment:
| Q |
12 |
agcatagggagagagttaaaaatgagctaatgaaacatattataggaagtgatcgatgttatgatataattcgtatgagtcccaaagctttcttaaactt |
111 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21262783 |
agcatagggagagagttagaaatgaggtaatgaaacatattataggaagtgatcgatgttatgatataattcgtatgagtcccaaagctttcttaaactt |
21262684 |
T |
|
| Q |
112 |
gtgcaccttattacgagatcgcggtggacttacacatacacgaagggcatctattgaggaacaagtagcaaaatttcttcacatggtaggacataatgtg |
211 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
21262683 |
gtgcatcttattacgagatcgcggtggacttacacatacacgaagggcgtctattgaggaacaagtagcaaaatttcttcagatggtaggacataatgtg |
21262584 |
T |
|
| Q |
212 |
agagatcgtgtgatgtctttcttctttagacgttctggtgaaacggttagtcgtcattttcatagagtactagatgctttgatagaggtggaggggatat |
311 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
21262583 |
agaaatcatgtgatgtctttcttctttagacgttatggtgaaacggttagtcgtcattttcatagagtactagacgctttgatagaggtggaggggatat |
21262484 |
T |
|
| Q |
312 |
ttctgaaacaacctgatggtacacaagttcctccagggatacttaacaacaataggttctacccgtattttaaggtaaacagatatcgtgtcttacacaa |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
21262483 |
ttctgaaacaacctgatggtacacaagttcctccagagatacttaacaacaataggttctgcccgtattttaaggtaaacagaaatcgtgtcttacacaa |
21262384 |
T |
|
| Q |
412 |
atattaataagttgtgttctgcacttttaatatgttaattgaatgtcaggactgtattggagcaattgattgtacacatgtgcgtgttaaagtaccagca |
511 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21262383 |
atattaataagttatgttctgcacttttaatatgttaattgaatgtcaggactgtattggagcaattgattgtacacatgtgcgtgttaaagtaccagca |
21262284 |
T |
|
| Q |
512 |
catcttgcacctagatatcgtggtagaaaag |
542 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
21262283 |
catcttgcacctagatatcgtggtagaaaag |
21262253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 12 - 542
Target Start/End: Complemental strand, 20541 - 20016
Alignment:
| Q |
12 |
agcatagggagagagttaaaaatgagctaatgaaacatattataggaagtgatcgatgttatgatataattcgtatgagtcccaaagctttcttaaactt |
111 |
Q |
| |
|
||||||| |||| ||||| || || |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
20541 |
agcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatgttatgatataattcgtatgagtcccaaagctttcgtaaactt |
20442 |
T |
|
| Q |
112 |
gtgcaccttattacgagatcgcggtggacttacacatacacgaagggcatctattgaggaacaagtagcaaaatttcttcacatggtaggacataatgtg |
211 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| || |||||||| || |
|
|
| T |
20441 |
gtgcaccttattacgagatcacggtgggcttacacatacacgaagagcatctatcgaggaacaagtagccaaatttcttcacacagtcggacataacgtc |
20342 |
T |
|
| Q |
212 |
agagatcgtgtgatgtctttcttctttagacgttctggtgaaacggttagtcgtcattttcatagagtactagatgctttgatagaggtggaggggatat |
311 |
Q |
| |
|
||| |||||||| |||| |||||||||||||| || |||||||| ||||||||||||||||||||||| |||||||||||||||| |||| | | || |
|
|
| T |
20341 |
agaaatcgtgtgttgtccttcttctttagacgctcaggtgaaacaattagtcgtcattttcatagagtattagatgctttgatagaattggaagacaaat |
20242 |
T |
|
| Q |
312 |
ttctgaaacaacctgatggtacacaagttcctccagggatacttaacaacaataggttctacccgtattttaaggtaaacagatatcgtgtcttacacaa |
411 |
Q |
| |
|
|| |||||||||||||||| |||||||| ||||||| ||||| ||||||||||||||||||||| ||||| ||||||| | | | |||||||||| |
|
|
| T |
20241 |
ttttgaaacaacctgatggaacacaagtgcctccagagatacgtaacaacaataggttctacccatatttcaaggtaagaata-agtttgtcttacac-- |
20145 |
T |
|
| Q |
412 |
atattaataagttgtgttctgcacttttaatatgttaattgaatgtcaggactgtattggagcaattgattgtacacatgtgcgtgttaaagtaccagca |
511 |
Q |
| |
|
| ||||||| |||| | |||||||||| | |||||||||| ||||| ||||| ||||||||||| ||||||||| | ||||| ||||| ||| || |
|
|
| T |
20144 |
--ttcgataagttatgttatacacttttaatgggataattgaatgccaggattgtatcggagcaattgactgtacacatatacgtgtcaaagttccaaca |
20047 |
T |
|
| Q |
512 |
catcttgcacctagatatcgtggtagaaaag |
542 |
Q |
| |
|
| |||||||||||||| ||||||||||||| |
|
|
| T |
20046 |
gaacttgcacctagataccgtggtagaaaag |
20016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 12 - 542
Target Start/End: Complemental strand, 22530404 - 22529879
Alignment:
| Q |
12 |
agcatagggagagagttaaaaatgagctaatgaaacatattataggaagtgatcgatgttatgatataattcgtatgagtcccaaagctttcttaaactt |
111 |
Q |
| |
|
||||||| |||| ||||| || || |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22530404 |
agcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatgttatgatataattcgtatgagtcccaaagctttcgtaaactt |
22530305 |
T |
|
| Q |
112 |
gtgcaccttattacgagatcgcggtggacttacacatacacgaagggcatctattgaggaacaagtagcaaaatttcttcacatggtaggacataatgtg |
211 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| || |||||||| || |
|
|
| T |
22530304 |
gtgcaccttattacgagatcacggtgggcttacacatacacgaagagcatctatcgaggaacaagtagccaaatttcttcacacagtcggacataacgtc |
22530205 |
T |
|
| Q |
212 |
agagatcgtgtgatgtctttcttctttagacgttctggtgaaacggttagtcgtcattttcatagagtactagatgctttgatagaggtggaggggatat |
311 |
Q |
| |
|
||| |||||||| |||| |||||||||||||| || |||||||| ||||||||||||||||||||||| |||||||||||||||| |||| | | || |
|
|
| T |
22530204 |
agaaatcgtgtgttgtccttcttctttagacgctcaggtgaaacaattagtcgtcattttcatagagtattagatgctttgatagaattggaagacaaat |
22530105 |
T |
|
| Q |
312 |
ttctgaaacaacctgatggtacacaagttcctccagggatacttaacaacaataggttctacccgtattttaaggtaaacagatatcgtgtcttacacaa |
411 |
Q |
| |
|
|| |||||||||||||||| |||||||| ||||||| ||||| ||||||||||||||||||||| ||||| ||||||| | | | |||||||||| |
|
|
| T |
22530104 |
ttttgaaacaacctgatggaacacaagtgcctccagagatacgtaacaacaataggttctacccatatttcaaggtaagaata-agtttgtcttacac-- |
22530008 |
T |
|
| Q |
412 |
atattaataagttgtgttctgcacttttaatatgttaattgaatgtcaggactgtattggagcaattgattgtacacatgtgcgtgttaaagtaccagca |
511 |
Q |
| |
|
| ||||||| |||| | |||||||||| | |||||||||| ||||| ||||| ||||||||||| ||||||||| | ||||| ||||| ||| || |
|
|
| T |
22530007 |
--ttcgataagttatgttatacacttttaatgggataattgaatgccaggattgtatcggagcaattgactgtacacatatacgtgtcaaagttccaaca |
22529910 |
T |
|
| Q |
512 |
catcttgcacctagatatcgtggtagaaaag |
542 |
Q |
| |
|
| |||||||||||||| ||||||||||||| |
|
|
| T |
22529909 |
gaacttgcacctagataccgtggtagaaaag |
22529879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 542
Target Start/End: Complemental strand, 25993013 - 25992488
Alignment:
| Q |
12 |
agcatagggagagagttaaaaatgagctaatgaaacatattataggaagtgatcgatgttatgatataattcgtatgagtcccaaagctttcttaaactt |
111 |
Q |
| |
|
||||||| |||| ||||| || || |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25993013 |
agcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatgttatgatataattcgtatgagtcccaaagctttcgtaaactt |
25992914 |
T |
|
| Q |
112 |
gtgcaccttattacgagatcgcggtggacttacacatacacgaagggcatctattgaggaacaagtagcaaaatttcttcacatggtaggacataatgtg |
211 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| || |||||||| || |
|
|
| T |
25992913 |
gtgcaccttattacgagatcacggtgggcttacacatacacgaagagcatctatcgaggaacaagtagccaaatttcttcacacagtcggacataacgtc |
25992814 |
T |
|
| Q |
212 |
agagatcgtgtgatgtctttcttctttagacgttctggtgaaacggttagtcgtcattttcatagagtactagatgctttgatagaggtggaggggatat |
311 |
Q |
| |
|
||| |||||||| |||| |||||||||||||| || |||||||| ||||||||||||||||||||||| |||||||||||||||| |||| | | || |
|
|
| T |
25992813 |
agaaatcgtgtgttgtccttcttctttagacgctcaggtgaaacaattagtcgtcattttcatagagtattagatgctttgatagaattggaagacaaat |
25992714 |
T |
|
| Q |
312 |
ttctgaaacaacctgatggtacacaagttcctccagggatacttaacaacaataggttctacccgtattttaaggtaaacagatatcgtgtcttacacaa |
411 |
Q |
| |
|
|| |||||||||||||||| |||||||| ||||||| ||||| ||||||||| ||||||||||| ||||| ||||||| | | | |||||||||| |
|
|
| T |
25992713 |
ttttgaaacaacctgatggaacacaagtgcctccagagatacgtaacaacaacaggttctacccatatttcaaggtaagaata-agtttgtcttacac-- |
25992617 |
T |
|
| Q |
412 |
atattaataagttgtgttctgcacttttaatatgttaattgaatgtcaggactgtattggagcaattgattgtacacatgtgcgtgttaaagtaccagca |
511 |
Q |
| |
|
| ||||||| |||| | |||||||||| | |||||||||| ||||| ||||| ||||||||||| ||||||||| | ||||| ||||| ||| || |
|
|
| T |
25992616 |
--ttcgataagttatgttatacacttttaatgggataattgaatgccaggattgtatcggagcaattgactgtacacatatacgtgtcaaagttccaaca |
25992519 |
T |
|
| Q |
512 |
catcttgcacctagatatcgtggtagaaaag |
542 |
Q |
| |
|
| |||||||||||||| ||||||||||||| |
|
|
| T |
25992518 |
gaacttgcacctagataccgtggtagaaaag |
25992488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 12 - 297
Target Start/End: Complemental strand, 22535089 - 22534804
Alignment:
| Q |
12 |
agcatagggagagagttaaaaatgagctaatgaaacatattataggaagtgatcgatgttatgatataattcgtatgagtcccaaagctttcttaaactt |
111 |
Q |
| |
|
||||||| |||| ||||| || || |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22535089 |
agcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatgttatgatataattcgtatgagtcccaaagctttcgtaaactt |
22534990 |
T |
|
| Q |
112 |
gtgcaccttattacgagatcgcggtggacttacacatacacgaagggcatctattgaggaacaagtagcaaaatttcttcacatggtaggacataatgtg |
211 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| || |||||||| || |
|
|
| T |
22534989 |
gtgcaccttattacgagatcacggtgggcttacacatacacgaagagcatctatcgaggaacaagtagccaaatttcttcacacagtcggacataacgtc |
22534890 |
T |
|
| Q |
212 |
agagatcgtgtgatgtctttcttctttagacgttctggtgaaacggttagtcgtcattttcatagagtactagatgctttgataga |
297 |
Q |
| |
|
||| |||||||| |||| |||||||||||||| || |||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22534889 |
agaaatcgtgtgttgtccttcttctttagacgctcaggtgaaacaattagtcgtcattttcatagagtattagatgctttgataga |
22534804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 315 - 542
Target Start/End: Complemental strand, 22533312 - 22533090
Alignment:
| Q |
315 |
tgaaacaacctgatggtacacaagttcctccagggatacttaacaacaataggttctacccgtattttaaggtaaacagatatcgtgtcttacacaaata |
414 |
Q |
| |
|
|||||||||||||||| |||||||| ||| ||| ||||| ||||||||||||||| ||||| ||||| ||||||| | | | |||||||||| |
|
|
| T |
22533312 |
tgaaacaacctgatggaacacaagtgccttcagagatacgtaacaacaataggttgtacccatatttcaaggtaagaataagtt-tgtcttacact---- |
22533218 |
T |
|
| Q |
415 |
ttaataagttgtgttctgcacttttaatatgttaattgaatgtcaggactgtattggagcaattgattgtacacatgtgcgtgttaaagtaccagcacat |
514 |
Q |
| |
|
| ||||||| |||| | |||||||||| | |||||||||| ||||| ||||| ||||||||||| ||||||||| | ||||| ||||| ||| || | |
|
|
| T |
22533217 |
tcgataagttatgttatacacttttaatgggataattgaatgccaggattgtatcggagcaattgactgtacacatatacgtgtcaaagttccaacagaa |
22533118 |
T |
|
| Q |
515 |
cttgcacctagatatcgtggtagaaaag |
542 |
Q |
| |
|
|||||||||||||| ||||||||||||| |
|
|
| T |
22533117 |
cttgcacctagataccgtggtagaaaag |
22533090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 459 - 508
Target Start/End: Complemental strand, 21267432 - 21267383
Alignment:
| Q |
459 |
aggactgtattggagcaattgattgtacacatgtgcgtgttaaagtacca |
508 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
21267432 |
aggactgcgttggagcaattgattgtacacatgttcgtgtaaaagtacca |
21267383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 12 - 542
Target Start/End: Original strand, 20984252 - 20984777
Alignment:
| Q |
12 |
agcatagggagagagttaaaaatgagctaatgaaacatattataggaagtgatcgatgttatgatataattcgtatgagtcccaaagctttcttaaactt |
111 |
Q |
| |
|
||||||| |||| ||||| || || |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
20984252 |
agcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatgttatgatataattcgtatgagtcccaaagctttcgtaaactt |
20984351 |
T |
|
| Q |
112 |
gtgcaccttattacgagatcgcggtggacttacacatacacgaagggcatctattgaggaacaagtagcaaaatttcttcacatggtaggacataatgtg |
211 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| || |||||||| || |
|
|
| T |
20984352 |
gtgcaccttattacgagatcacggtgggcttacacatacacgaagagcatctatcgaggaacaagtagccaaatttcttcacacagtcggacataacgtc |
20984451 |
T |
|
| Q |
212 |
agagatcgtgtgatgtctttcttctttagacgttctggtgaaacggttagtcgtcattttcatagagtactagatgctttgatagaggtggaggggatat |
311 |
Q |
| |
|
||| |||||||| |||| |||||||||||||| || |||||||| ||||||||||||||||||||||| |||||||||||||||| |||| | | || |
|
|
| T |
20984452 |
agaaatcgtgtgttgtccttcttctttagacgctcaggtgaaacaattagtcgtcattttcatagagtattagatgctttgatagaattggaagacaaat |
20984551 |
T |
|
| Q |
312 |
ttctgaaacaacctgatggtacacaagttcctccagggatacttaacaacaataggttctacccgtattttaaggtaaacagatatcgtgtcttacacaa |
411 |
Q |
| |
|
|| |||||||||||||||| |||||||| ||||||| ||||| ||||||||||||||||||||| ||||| ||||||| | | | |||||||||| |
|
|
| T |
20984552 |
ttttgaaacaacctgatggaacacaagtgcctccagagatacgtaacaacaataggttctacccatatttcaaggtaagaata-agtttgtcttacac-- |
20984648 |
T |
|
| Q |
412 |
atattaataagttgtgttctgcacttttaatatgttaattgaatgtcaggactgtattggagcaattgattgtacacatgtgcgtgttaaagtaccagca |
511 |
Q |
| |
|
| ||||||| |||| | |||||||||| | |||||||||| ||||| ||||| ||||||||||| ||||||||| | ||||| ||||| ||| || |
|
|
| T |
20984649 |
--ttcgataagttatgttatacacttttaatgggataattgaatgccaggattgtatcggagcaattgactgtacacatatacgtgtcaaagttccaaca |
20984746 |
T |
|
| Q |
512 |
catcttgcacctagatatcgtggtagaaaag |
542 |
Q |
| |
|
| |||||||||||||| ||||||||||||| |
|
|
| T |
20984747 |
gaacttgcacctagataccgtggtagaaaag |
20984777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 542
Target Start/End: Complemental strand, 49367482 - 49366956
Alignment:
| Q |
12 |
agcatagggagagagttaaaaatgagctaatgaaacatattataggaagtgatcgatgttatgatataattcgtatgagtcccaaagctttcttaaactt |
111 |
Q |
| |
|
||||||| |||| ||||| || || |||||||||||||| ||||| ||||| |||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
49367482 |
agcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatgttatgatataatttgtatgagtcccaaagctttcgtaaactt |
49367383 |
T |
|
| Q |
112 |
gtgcaccttattacgagatcgcggtggacttacacatacacgaagggcatctattgaggaacaagtagcaaaatttcttcacatggtaggacataatgtg |
211 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| || |||||||| || |
|
|
| T |
49367382 |
gtgcaccttattacgagatcacggtgggcttacacatacacgaagagcatctatcgaggaacaagtagccaaatttcttcacacagtcggacataacgtc |
49367283 |
T |
|
| Q |
212 |
agagatcgtgtgatgtctttcttctttagacgttctggtgaaacggttagtcgtcattttcatagagtactagatgctttgatagaggtggaggggatat |
311 |
Q |
| |
|
||| |||||||| |||| |||||||||||||| || |||||||| ||||||||||||||||||||||| ||||| |||||||||| |||| | | || |
|
|
| T |
49367282 |
agaaatcgtgtgttgtccttcttctttagacgctcaggtgaaacaattagtcgtcattttcatagagtattagatactttgatagaattggaagacaaat |
49367183 |
T |
|
| Q |
312 |
ttctgaaacaacctgatggtacacaagttcctccagggatacttaacaacaat-aggttctacccgtattttaaggtaaacagatatcgtgtcttacaca |
410 |
Q |
| |
|
|| |||||||||||||||| |||||||| ||||||| ||||| |||||||||| ||||||||||| ||||| ||||||| | | | |||||||||| |
|
|
| T |
49367182 |
ttttgaaacaacctgatggaacacaagtgcctccagagatacgtaacaacaataaggttctacccatatttcaaggtaagaata-agtttgtcttacac- |
49367085 |
T |
|
| Q |
411 |
aatattaataagttgtgttctgcacttttaatatgttaattgaatgtcaggactgtattggagcaattgattgtacacatgtgcgtgttaaagtaccagc |
510 |
Q |
| |
|
| ||||||| |||| | |||||||||| | |||||||||| ||||| ||||| ||||||||||| |||||||| | ||||| ||||| ||| | |
|
|
| T |
49367084 |
---ttcgataagttatgttatacacttttaatgggataattgaatgccaggattgtatcggagcaattgaccgtacacatatacgtgtcaaagttccaac |
49366988 |
T |
|
| Q |
511 |
acatcttgcacctagatatcgtggtagaaaag |
542 |
Q |
| |
|
| | |||||||||||||| ||||||||||||| |
|
|
| T |
49366987 |
agaacttgcacctagataccgtggtagaaaag |
49366956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 468 - 508
Target Start/End: Original strand, 8407250 - 8407290
Alignment:
| Q |
468 |
ttggagcaattgattgtacacatgtgcgtgttaaagtacca |
508 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
8407250 |
ttggagcaattgattgtacacatgttcgtgtaaaagtacca |
8407290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 542
Target Start/End: Original strand, 33092162 - 33092687
Alignment:
| Q |
12 |
agcatagggagagagttaaaaatgagctaatgaaacatattataggaagtgatcgatgttatgatataattcgtatgagtcccaaagctttcttaaactt |
111 |
Q |
| |
|
||||||| |||| ||||| || || |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33092162 |
agcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatgttatgatataattcgtatgagtcccaaagctttcgtaaactt |
33092261 |
T |
|
| Q |
112 |
gtgcaccttattacgagatcgcggtggacttacacatacacgaagggcatctattgaggaacaagtagcaaaatttcttcacatggtaggacataatgtg |
211 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| || |||||||| || |
|
|
| T |
33092262 |
gtgcaccttattacgagatcacggtgggcttacacatacacgaagagcatctatcgaggaacaagtagccaaatttcttcacacagtcggacataacgtc |
33092361 |
T |
|
| Q |
212 |
agagatcgtgtgatgtctttcttctttagacgttctggtgaaacggttagtcgtcattttcatagagtactagatgctttgatagaggtggaggggatat |
311 |
Q |
| |
|
||| |||||||| |||| |||||||||||||| || |||||||| ||||||||||||||||||||||| |||||||||||||||| |||| | | || |
|
|
| T |
33092362 |
agaaatcgtgtgttgtccttcttctttagacgctcaggtgaaacaattagtcgtcattttcatagagtattagatgctttgatagaattggaagacaaat |
33092461 |
T |
|
| Q |
312 |
ttctgaaacaacctgatggtacacaagttcctccagggatacttaacaacaataggttctacccgtattttaaggtaaacagatatcgtgtcttacacaa |
411 |
Q |
| |
|
|| |||||||||||||||| |||||||| |||||| ||||| ||||||||||||||||||||| ||||| ||||||| | | | |||||||||| |
|
|
| T |
33092462 |
ttttgaaacaacctgatggaacacaagtgcctccaaagatacgtaacaacaataggttctacccatatttcaaggtaagaata-agtttgtcttacac-- |
33092558 |
T |
|
| Q |
412 |
atattaataagttgtgttctgcacttttaatatgttaattgaatgtcaggactgtattggagcaattgattgtacacatgtgcgtgttaaagtaccagca |
511 |
Q |
| |
|
| ||||||| |||| | |||||||||| | |||||||||| ||||| ||||| ||||||||||| ||||||||| | ||||| ||||| ||| || |
|
|
| T |
33092559 |
--ttcgataagttatgttatacacttttaatgggataattgaatgccaggattgtatcggagcaattgactgtacacatatacgtgtcaaagttccaaca |
33092656 |
T |
|
| Q |
512 |
catcttgcacctagatatcgtggtagaaaag |
542 |
Q |
| |
|
| |||||||||||||| ||||||||||||| |
|
|
| T |
33092657 |
gaacttgcacctagataccgtggtagaaaag |
33092687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 542
Target Start/End: Complemental strand, 13190833 - 13190308
Alignment:
| Q |
12 |
agcatagggagagagttaaaaatgagctaatgaaacatattataggaagtgatcgatgttatgatataattcgtatgagtcccaaagctttcttaaactt |
111 |
Q |
| |
|
||||||| |||| ||||| || || |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
13190833 |
agcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatgttatgatataattcgtatgagtcccaaagctttcgtaaactt |
13190734 |
T |
|
| Q |
112 |
gtgcaccttattacgagatcgcggtggacttacacatacacgaagggcatctattgaggaacaagtagcaaaatttcttcacatggtaggacataatgtg |
211 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||| |||| |||||||| |||||||||||||| ||||||||||||| || ||||||||||| |
|
|
| T |
13190733 |
gtgcaccttattacgagatcacggtgggcttacacatacatgaagagcatctatcgaggaacaagtagccaaatttcttcacacagtcggacataatgtc |
13190634 |
T |
|
| Q |
212 |
agagatcgtgtgatgtctttcttctttagacgttctggtgaaacggttagtcgtcattttcatagagtactagatgctttgatagaggtggaggggatat |
311 |
Q |
| |
|
||| |||||||| |||| |||||||||||||| || |||||||| ||||||||||||||||||||||| |||||||||||||||| |||| | | || |
|
|
| T |
13190633 |
agaaatcgtgtgttgtccttcttctttagacgctcaggtgaaacaattagtcgtcattttcatagagtattagatgctttgatagaattggaagacaaat |
13190534 |
T |
|
| Q |
312 |
ttctgaaacaacctgatggtacacaagttcctccagggatacttaacaacaataggttctacccgtattttaaggtaaacagatatcgtgtcttacacaa |
411 |
Q |
| |
|
|| |||||||||||||||| |||||||| ||||||| ||||| ||||||||||||||||||||| ||||| ||||||| | | | | |||||||| |
|
|
| T |
13190533 |
ttttgaaacaacctgatggaacacaagtgcctccagagatacgtaacaacaataggttctacccatatttcaaggtaagaata-agtttttcttacac-- |
13190437 |
T |
|
| Q |
412 |
atattaataagttgtgttctgcacttttaatatgttaattgaatgtcaggactgtattggagcaattgattgtacacatgtgcgtgttaaagtaccagca |
511 |
Q |
| |
|
| ||||| || |||| | |||||||||| | |||||||||| ||||| ||||| ||||||||||| ||||||||| | ||||| ||||| ||| || |
|
|
| T |
13190436 |
--ttcaataaattatgttatacacttttaatgggataattgaatgccaggattgtatcggagcaattgactgtacacatatacgtgtcaaagttccaaca |
13190339 |
T |
|
| Q |
512 |
catcttgcacctagatatcgtggtagaaaag |
542 |
Q |
| |
|
| |||||||||||||| ||||||||||||| |
|
|
| T |
13190338 |
gaacttgcacctagataccgtggtagaaaag |
13190308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 468 - 508
Target Start/End: Complemental strand, 37504086 - 37504046
Alignment:
| Q |
468 |
ttggagcaattgattgtacacatgtgcgtgttaaagtacca |
508 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
37504086 |
ttggagcaattgattgtacacatgttcgtgtaaaagtacca |
37504046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 508
Target Start/End: Original strand, 26248093 - 26248134
Alignment:
| Q |
467 |
attggagcaattgattgtacacatgtgcgtgttaaagtacca |
508 |
Q |
| |
|
|||||||||||||||||||||||||| ||| | ||||||||| |
|
|
| T |
26248093 |
attggagcaattgattgtacacatgttcgtataaaagtacca |
26248134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 542
Target Start/End: Complemental strand, 20716703 - 20716178
Alignment:
| Q |
12 |
agcatagggagagagttaaaaatgagctaatgaaacatattataggaagtgatcgatgttatgatataattcgtatgagtcccaaagctttcttaaactt |
111 |
Q |
| |
|
||||||| |||| ||||| || || |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
20716703 |
agcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatgttatgatataattcgtatgagtcccaaagctttcgtaaactt |
20716604 |
T |
|
| Q |
112 |
gtgcaccttattacgagatcgcggtggacttacacatacacgaagggcatctattgaggaacaagtagcaaaatttcttcacatggtaggacataatgtg |
211 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| || |||||||| || |
|
|
| T |
20716603 |
gtgcaccttattacgagatcacggtgggcttacacatacacgaagagcatctatcgaggaacaagtagccaaatttcttcacacagtcggacataacgtc |
20716504 |
T |
|
| Q |
212 |
agagatcgtgtgatgtctttcttctttagacgttctggtgaaacggttagtcgtcattttcatagagtactagatgctttgatagaggtggaggggatat |
311 |
Q |
| |
|
||| |||||||| |||| |||||||||||||| || |||||||| ||||||||||||||||||||||| |||||||||||||||| |||| | || | |
|
|
| T |
20716503 |
agaaatcgtgtgttgtccttcttctttagacgctcaggtgaaacaattagtcgtcattttcatagagtattagatgctttgatagaattggaagaaattt |
20716404 |
T |
|
| Q |
312 |
ttctgaaacaacctgatggtacacaagttcctccagggatacttaacaacaataggttctacccgtattttaaggtaaacagatatcgtgtcttacacaa |
411 |
Q |
| |
|
|| |||||||||||||||| |||||||| ||||||| |||| ||||||||||||||||||||| ||||| ||||||| | | | |||||||||| |
|
|
| T |
20716403 |
ttttgaaacaacctgatggaacacaagtgcctccagagatatgtaacaacaataggttctacccatatttcaaggtaagaata-agtttgtcttacac-- |
20716307 |
T |
|
| Q |
412 |
atattaataagttgtgttctgcacttttaatatgttaattgaatgtcaggactgtattggagcaattgattgtacacatgtgcgtgttaaagtaccagca |
511 |
Q |
| |
|
| ||||||| |||| | |||||||||| | |||||||||| ||||| ||||| ||||||||||| ||||||||| | ||||| ||||| ||| || |
|
|
| T |
20716306 |
--ttcgataagttatgttatacacttttaatgggataattgaatgccaggattgtatcggagcaattgactgtacacatatacgtgtcaaagttccaaca |
20716209 |
T |
|
| Q |
512 |
catcttgcacctagatatcgtggtagaaaag |
542 |
Q |
| |
|
| |||||||||||||| ||||||||||||| |
|
|
| T |
20716208 |
gaacttgcacctagataccgtggtagaaaag |
20716178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 468 - 508
Target Start/End: Original strand, 32038268 - 32038308
Alignment:
| Q |
468 |
ttggagcaattgattgtacacatgtgcgtgttaaagtacca |
508 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
32038268 |
ttggagcaattgattgtacacatgttcgtgtaaaagtacca |
32038308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 468 - 508
Target Start/End: Original strand, 37569027 - 37569067
Alignment:
| Q |
468 |
ttggagcaattgattgtacacatgtgcgtgttaaagtacca |
508 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
37569027 |
ttggagcaattgattgtacacatgttcgtgtaaaagtacca |
37569067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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