View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10330_low_31 (Length: 273)

Name: NF10330_low_31
Description: NF10330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10330_low_31
NF10330_low_31
[»] chr5 (13 HSPs)
chr5 (19-273)||(41366828-41367082)
chr5 (19-189)||(41286926-41287095)
chr5 (42-255)||(41316693-41316906)
chr5 (38-199)||(41328790-41328951)
chr5 (38-199)||(41332723-41332884)
chr5 (45-199)||(41324813-41324967)
chr5 (49-196)||(41337533-41337680)
chr5 (38-253)||(31177926-31178141)
chr5 (38-182)||(41310967-41311115)
chr5 (51-197)||(41431966-41432112)
chr5 (45-185)||(31187996-31188136)
chr5 (46-199)||(31225628-31225781)
chr5 (106-189)||(14235879-14235962)
[»] chr4 (1 HSPs)
chr4 (38-188)||(17248806-17248956)


Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 41367082 - 41366828
Alignment:
Q  19 atcaacaatggtatggcatgatgcaacctcaatgtttctttgataacagacttcaagtatatcaattggtgcaactctgtctcattcacatatccctttt 118  Q
    ||||| |||||||| | | |||||||||||| |||||||||||| || || || ||||||||||||||||||||||||||||||||||||||||||||||    
T  41367082 atcaataatggtatagaaggatgcaacctcattgtttctttgatgacggattttaagtatatcaattggtgcaactctgtctcattcacatatccctttt 41366983  T
Q  119 tatcaaacactcttcttacctcaacttgtgctgcttccattaccatcggattctttaccatctcagacatcgtccataacatagcttccgaagatgattg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  41366982 tatcaaacactcttcttacctcaacttgtgctgcttccattaccatcggattctttaccatctcagacatcgtccataacacagcttcagaagatgattg 41366883  T
Q  219 agtgccaccaacaaacatgtcctgcaaatggattaacggtagccttgtctaatat 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41366882 agtgccaccaacaaacatgtcctgcaaatggattaacggtagccttgtctaatat 41366828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 41287095 - 41286926
Alignment:
Q  19 atcaacaatggtatggcatgatgcaacctcaatgtttctttgataacagacttcaagtatatcaattggtgcaactctgtctcattcacatatccctttt 118  Q
    |||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||     
T  41287095 atcaacaatggtatagcaggatgcaacctcattgtttctttgataacagacttcaagtatatcaattggtgcaactctgtctcaaccacatacccctttc 41286996  T
Q  119 tatcaaacactcttcttacctcaacttgtgctgcttccattaccatcggattctttaccatctcagacatc 189  Q
    ||||||||||||||||||||||| ||||||||  |||||| ||| | ||||||||||||||||||||||||    
T  41286995 tatcaaacactcttcttacctcagcttgtgct-tttccatcacctttggattctttaccatctcagacatc 41286926  T

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Target: chr5; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 42 - 255
Target Start/End: Complemental strand, 41316906 - 41316693
Alignment:
Q  42 caacctcaatgtttctttgataacagacttcaagtatatcaattggtgcaactctgtctcattcacatatccctttttatcaaacactcttcttacctca 141  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  41316906 caacctcaatgtttctttgatgacagactttaagtatatcaattggtacaactctgtctcatccacatatccctttttatcaaacactcttcttacttca 41316807  T
Q  142 acttgtgctgcttccattaccatcggattctttaccatctcagacatcgtccataacatagcttccgaagatgattgagtgccaccaacaaacatgtcct 241  Q
     ||||||||  |||||||||  | |  || ||||||||| ||||||||| ||| | || ||| || || |||| || ||| ||| || ||||||||||||    
T  41316806 gcttgtgcttgttccattacatttgagttttttaccatcgcagacatcgcccaaatcacagcctctgacgatgtttcagtaccagcaccaaacatgtcct 41316707  T
Q  242 gcaaatggattaac 255  Q
    ||||||||||||||    
T  41316706 gcaaatggattaac 41316693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 38 - 199
Target Start/End: Complemental strand, 41328951 - 41328790
Alignment:
Q  38 gatgcaacctcaatgtttctttgataacagacttcaagtatatcaattggtgcaactctgtctcattcacatatccctttttatcaaacactcttcttac 137  Q
    ||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||| |||||    
T  41328951 gatgcaacctcaatgtttctttgatgacggactttaagtatatcaattggtgcaactctgtctcatccacatactcctttttatcaaacactctacttac 41328852  T
Q  138 ctcaacttgtgctgcttccattaccatcggattctttaccatctcagacatcgtccataaca 199  Q
     ||| |||||||| ||||||||||| | || ||||| |||||||||||||||| ||||||||    
T  41328851 ttcatcttgtgcttcttccattacctttgggttcttcaccatctcagacatcgcccataaca 41328790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 38 - 199
Target Start/End: Complemental strand, 41332884 - 41332723
Alignment:
Q  38 gatgcaacctcaatgtttctttgataacagacttcaagtatatcaattggtgcaactctgtctcattcacatatccctttttatcaaacactcttcttac 137  Q
    |||| |||||||||||||||||||  |||||||| ||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||    
T  41332884 gatgtaacctcaatgtttctttgacgacagactttaagtatatcaattggtgcaactctgactcatccacatacccctttttatcaaacactcttcttac 41332785  T
Q  138 ctcaacttgtgctgcttccattaccatcggattctttaccatctcagacatcgtccataaca 199  Q
     ||||  |||||| |||||| |||| | || |||||||||||||||||||||| ||||||||    
T  41332784 ttcaatctgtgcttcttccaatacctttgggttctttaccatctcagacatcgcccataaca 41332723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 45 - 199
Target Start/End: Complemental strand, 41324967 - 41324813
Alignment:
Q  45 cctcaatgtttctttgataacagacttcaagtatatcaattggtgcaactctgtctcattcacatatccctttttatcaaacactcttcttacctcaact 144  Q
    ||||| |||||| ||||| ||||| || ||||||||||||||||||||||||||||||| |||| | |||||  ||||||| ||||||||||||||| ||    
T  41324967 cctcattgtttccttgatcacagattttaagtatatcaattggtgcaactctgtctcatccacaaaccccttcctatcaaaaactcttcttacctcagct 41324868  T
Q  145 tgtgctgcttccattaccatcggattctttaccatctcagacatcgtccataaca 199  Q
    |||||| ||||||| ||| | |||||||||||||||||||| |||| ||||||||    
T  41324867 tgtgcttcttccatcacctttggattctttaccatctcagatatcgcccataaca 41324813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 49 - 196
Target Start/End: Complemental strand, 41337680 - 41337533
Alignment:
Q  49 aatgtttctttgataacagacttcaagtatatcaattggtgcaactctgtctcattcacatatccctttttatcaaacactcttcttacctcaacttgtg 148  Q
    |||||||||||||| ||| |||| |||||| |||| || |||||||||||||| |  ||||| |||||||||||||||||||||||||||||||||||||    
T  41337680 aatgtttctttgatgacacactttaagtatgtcaactgttgcaactctgtctcgtctacatacccctttttatcaaacactcttcttacctcaacttgtg 41337581  T
Q  149 ctgcttccattaccatcggattctttaccatctcagacatcgtccata 196  Q
    || |||||||||| || || ||||||| |||||| ||||||| |||||    
T  41337580 cttcttccattactattgggttctttatcatctccgacatcgcccata 41337533  T

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Target: chr5; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 38 - 253
Target Start/End: Original strand, 31177926 - 31178141
Alignment:
Q  38 gatgcaacctcaatgtttctttgataacagacttcaagtatatcaattggtgcaactctgtctcattcacatatccctttttatcaaacactcttcttac 137  Q
    |||||||||| |||||||||||||| | |||||| ||||||||||| |||||||||||||| ||||  ||||  |||||||||||||||||| |||||||    
T  31177926 gatgcaaccttaatgtttctttgattatagactttaagtatatcaaatggtgcaactctgtttcatcgacatgcccctttttatcaaacacttttcttac 31178025  T
Q  138 ctcaacttgtgctgcttccattaccatcggattctttaccatctcagacatcgtccataacatagcttccgaagatgattgagtgccaccaacaaacatg 237  Q
     ||| |||||||| | | ||||| | | || ||||||| ||||||||| |||  |||||||| | || | || |||| ||  || ||||||||||||||     
T  31178026 ttcagcttgtgcttccttcattatctttgggttctttatcatctcagatatcccccataacacaactcctgatgatgtttcggtaccaccaacaaacata 31178125  T
Q  238 tcctgcaaatggatta 253  Q
    |||| |||||||||||    
T  31178126 tcctacaaatggatta 31178141  T

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Target: chr5; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 38 - 182
Target Start/End: Complemental strand, 41311115 - 41310967
Alignment:
Q  38 gatgcaacctcaatgtttctttgataacagacttcaagtatatcaattggtgcaactctgtctcattcacatat----ccctttttatcaaacactcttc 133  Q
    |||||||||||| |||||||||||| ||| |||| |||||||||||  ||||||||||  |||||| |||||||    ||||||||||||||||||||||    
T  41311115 gatgcaacctcagtgtttctttgatgacaaactttaagtatatcaacaggtgcaactccatctcatccacatatatacccctttttatcaaacactcttc 41311016  T
Q  134 ttacctcaacttgtgctgcttccattaccatcggattctttaccatctc 182  Q
    |||| |||||||||||| ||||||||||| | || ||||||||||||||    
T  41311015 ttacttcaacttgtgcttcttccattacctttgggttctttaccatctc 41310967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 51 - 197
Target Start/End: Complemental strand, 41432112 - 41431966
Alignment:
Q  51 tgtttctttgataacagacttcaagtatatcaattggtgcaactctgtctcattcacatatccctttttatcaaacactcttcttacctcaacttgtgct 150  Q
    |||||||||||| | |||||||||||||||||||| ||||||||| ||||||| |||||| || ||  ||||||||||||||||||||||| ||||||||    
T  41432112 tgtttctttgatgatagacttcaagtatatcaattagtgcaactcagtctcatccacataccctttcatatcaaacactcttcttacctcagcttgtgct 41432013  T
Q  151 gcttccattaccatcggattctttaccatctcagacatcgtccataa 197  Q
     ||||||| ||  |||| |||||  ||||||||||||||| ||||||    
T  41432012 tcttccatcacattcgggttcttcgccatctcagacatcgcccataa 41431966  T

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Target: chr5; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 45 - 185
Target Start/End: Original strand, 31187996 - 31188136
Alignment:
Q  45 cctcaatgtttctttgataacagacttcaagtatatcaattggtgcaactctgtctcattcacatatccctttttatcaaacactcttcttacctcaact 144  Q
    ||||||||||||| |||| | |||||| |||||||||||||||||||||||||| ||||  ||||| |||||||||||||||||| ||||||| ||| ||    
T  31187996 cctcaatgtttctctgattatagactttaagtatatcaattggtgcaactctgtttcatcgacatacccctttttatcaaacacttttcttacttcagct 31188095  T
Q  145 tgtgctgcttccattaccatcggattctttaccatctcaga 185  Q
    ||||||   ||||||| | | || |||||||||||||||||    
T  31188096 tgtgctttctccattatctttgggttctttaccatctcaga 31188136  T

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Target: chr5; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 199
Target Start/End: Complemental strand, 31225781 - 31225628
Alignment:
Q  46 ctcaatgtttctttgataacagacttcaagtatatcaattggtgcaactctgtctcattcacatatccctttttatcaaacactcttcttacctcaactt 145  Q
    |||||||||||| | || | |||||| |||||||| ||||||||||||||||| ||||  |||| |||||||||||||||||   ||||||| ||| |||    
T  31225781 ctcaatgtttctctaattatagactttaagtatattaattggtgcaactctgtttcatcgacatgtccctttttatcaaacatgtttcttacttcagctt 31225682  T
Q  146 gtgctgcttccattaccatcggattctttaccatctcagacatcgtccataaca 199  Q
    ||||| | ||||||| | | || ||||||||||||||||| |||  ||||||||    
T  31225681 gtgcttcctccattatctttgggttctttaccatctcagatatcccccataaca 31225628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 189
Target Start/End: Complemental strand, 14235962 - 14235879
Alignment:
Q  106 acatatccctttttatcaaacactcttcttacctcaacttgtgctgcttccattaccatcggattctttaccatctcagacatc 189  Q
    ||||| |||||| |||||||| | |||||||||||| |||||||| ||||||| ||| | || |||||||| ||||||||||||    
T  14235962 acatacccctttctatcaaactcccttcttacctcagcttgtgcttcttccatcaccctagggttctttacaatctcagacatc 14235879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 188
Target Start/End: Original strand, 17248806 - 17248956
Alignment:
Q  38 gatgcaacctcaatgtttctttgataacagacttcaagtatatcaattggtgcaactctgtctcattcacatatccctttttatcaaacactcttcttac 137  Q
    |||||| ||||| |||||||||||| ||||| || |||||||| ||||| | |||||| || ||||  ||||| |||||| ||||||| || ||||||||    
T  17248806 gatgcagcctcagtgtttctttgatgacagaatttaagtatattaattgatccaactccgtttcatctacatacccctttctatcaaaaacacttcttac 17248905  T
Q  138 ctcaacttgtgctgcttccattaccatcggattctttaccatctcagacat 188  Q
    |||| |||||||||||||||| ||| | || || ||||  |||||||||||    
T  17248906 ctcagcttgtgctgcttccatcacctttgggttttttattatctcagacat 17248956  T

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