View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10330_low_33 (Length: 255)
Name: NF10330_low_33
Description: NF10330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10330_low_33 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 55453164 - 55452922
Alignment:
| Q |
13 |
agcacagagacatacttatgcggtgttcgagctcctaatagaactgcagtgaacctgtatccaacnnnnnnnaccataactccacaaggaactcaggatc |
112 |
Q |
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| T |
55453164 |
agcacagagacatacttatgcggtgttcgagctcctaatagaactgcagttaacctgtatccaactttttttaccataactccacaaggaactcaggatc |
55453065 |
T |
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| Q |
113 |
tggaaatacaaatcaatgtcactcaaccaagtgaagattttagctttggtgaaattgttttggcaggaagtatgaaccacatagtaagaataactttgtc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55453064 |
tggaaatacaaatcaatgtcactcaaccaagtgaagattttagctttggtgaaattgttttggcaggaagtatgaaccacatagtaagaataactttgtc |
55452965 |
T |
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| Q |
213 |
agttgtgccagtttcaacacaatgactattgaataccgaatgc |
255 |
Q |
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| T |
55452964 |
agttgtgccagtttcaacacaatgactattgaataccgaatgc |
55452922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 55705158 - 55705363
Alignment:
| Q |
13 |
agcacagagacatacttatgcggtgttcgagctcctaatagaactgcagtgaacctgtatccaacnnnnnnn-accataactccacaaggaactcaggat |
111 |
Q |
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||||||||||||||||| |||||||||| |||||||||| |||||||||| ||| |||||||||| |||||||||||||| |||| | |||| |
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| T |
55705158 |
agcacagagacatacttgtgcggtgttctagctcctaatggaactgcagttaacttgtatccaacttttttttaccataactccacatagaacacgggat |
55705257 |
T |
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| Q |
112 |
ctggaaatacaaatcaatgtcactcaaccaagtgaagattttagctttggtgaaattgttttggcaggaagtatgaaccacatagtaagaataactttgt |
211 |
Q |
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| T |
55705258 |
ctggaaatacaaatcaatgtcactcaaccaagtgaagattttagctttggtgaaattgttttggcaggaagtatgaaccacatagtaagaataactttgt |
55705357 |
T |
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| Q |
212 |
cagttg |
217 |
Q |
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|||||| |
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| T |
55705358 |
cagttg |
55705363 |
T |
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