View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10330_low_34 (Length: 254)
Name: NF10330_low_34
Description: NF10330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10330_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 4 - 241
Target Start/End: Original strand, 4455474 - 4455708
Alignment:
| Q |
4 |
aaacacattgatcaaaatcaaaattataattttatctaaagtattttatgaacttaaaaattactaactaactaagcagtcatatcaaaactggcaatag |
103 |
Q |
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| T |
4455474 |
aaacacattgatcaaaatcaaaattataattttatctaaagtattttatgaacttaaaaattactaactaagta----gtcatatcaaaactggcaatgg |
4455569 |
T |
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| Q |
104 |
aaagtagaaa-gtgaaaaattctttgttccaacctataatttatgtttgtaggaatgcttgacgtggaattgattcattcaacacgggtcattgatattt |
202 |
Q |
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| T |
4455570 |
aaagtagaaaagtgaaaaattctttgttccaacctataatttatgtttgtaagaatgcttgacgtggaattgattcattcaacacgggccattgatattt |
4455669 |
T |
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| Q |
203 |
taagttttgtggttaacttgtgacatcgtcaacctttgc |
241 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |
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| T |
4455670 |
taagttttgtggttaacttgtgacatcgtcaatctttgc |
4455708 |
T |
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