View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10330_low_36 (Length: 250)
Name: NF10330_low_36
Description: NF10330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10330_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 44633784 - 44633546
Alignment:
| Q |
1 |
ttcaccaaaaaacaatgtgaggtagaaaaccacagtacttaatttaaacactatcaaacagtatactcaaaatttctcaatgcaactttcaatatttaga |
100 |
Q |
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| T |
44633784 |
ttcaccaaaaaacaatgtgaggtagaaaaccacagtacttaatttaaacactatcaaacagtatactcaaaatttctcaatgcaactttcaatatttaga |
44633685 |
T |
|
| Q |
101 |
taacttgtatatccagggatagatgatagtctagttatgcatcaattataacgtagaaaactcgtacttataacaagagttacagacagaaagtaaaaaa |
200 |
Q |
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| T |
44633684 |
taacttgtatatccagggatagatgatagtctagttatgcatcaattataacgtagaaaactcgtacttataataagagttacagacagaaagtaaaaaa |
44633585 |
T |
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| Q |
201 |
ccacggtaactccgttaaacagttctccaaatacttcat |
239 |
Q |
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| T |
44633584 |
ccacggtaactcggttaaacagttcttcaaatacttcat |
44633546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 163
Target Start/End: Complemental strand, 44684092 - 44684011
Alignment:
| Q |
83 |
caactttcaatatttagataacttgtatatccagggatagatgatagtctagttatgcatcaa-ttataacgtagaaaactc |
163 |
Q |
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||||||||| || |||| ||| ||||||| || ||||| ||| |||||||||||||||||| |||||| ||||||||||| |
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| T |
44684092 |
caactttcacaatgtagaaaacatgtatatacaaggataattgaaagtctagttatgcatcaatttataatgtagaaaactc |
44684011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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