View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10330_low_39 (Length: 243)
Name: NF10330_low_39
Description: NF10330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10330_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 6505963 - 6506178
Alignment:
| Q |
9 |
taacaaatcatctgaaccattcttctcaaaattatattcaacacaaaatggttctctgagtttagcattacctgctaaagggtgacaagaactaaatctg |
108 |
Q |
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| T |
6505963 |
taacaaatcacctgaaacattcttctcaaacttatactcaacacaaaatggttctctgagtttagcattacctgctaaagggtgacaagaactaaatctg |
6506062 |
T |
|
| Q |
109 |
tcaagaacagcttcgtttttcgaatcagaatccggtagcaaagcaatccgaattatgccggaaaaggtgtcagaagttatctgagaagtaaaatgactca |
208 |
Q |
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| T |
6506063 |
tcaagaacagcttcgtttttcgaatcagaacccggtagcaaagcaatccgaattataccggaaaaggtgtcagaagttatctgagaagtaaaatgactca |
6506162 |
T |
|
| Q |
209 |
acttgattggcgagga |
224 |
Q |
| |
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|||||||||||||||| |
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| T |
6506163 |
acttgattggcgagga |
6506178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 6515807 - 6515584
Alignment:
| Q |
1 |
gctaacagtaacaaatcatctgaaccattcttctcaaaattatattcaacacaaaatggttctctgagtttagcattacctgctaaagggtgacaagaac |
100 |
Q |
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||||||| |||||||||| ||||||| ||||||||||| ||||| |||| |||||| | ||| || |||||||||| ||||| |||||||| |||||||| |
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| T |
6515807 |
gctaacaataacaaatcacctgaacctttcttctcaaacttatactcaagacaaaacgtttcactaagtttagcatcacctgataaagggtaacaagaac |
6515708 |
T |
|
| Q |
101 |
taaatctgtcaagaacagcttcgtttttcgaatcagaatccggtagcaaagcaatccgaattatgccggaaaaggtgtcagaagttatctgagaagtaaa |
200 |
Q |
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| T |
6515707 |
taaacctatcaagaatagccttgtatttcggatcggaatttggcaacaaagcgatccgaattataccagaaaaggccttagaagtaatcttaaaagtttc |
6515608 |
T |
|
| Q |
201 |
atgactcaacttgattggcgagga |
224 |
Q |
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| T |
6515607 |
atgactcaacttgattggtgagga |
6515584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 6472737 - 6472555
Alignment:
| Q |
13 |
aaatcatctgaaccattcttctcaaaattatattcaacacaaaatggttctctgagtttagcattacctgctaaagggtgacaagaactaaatctgtcaa |
112 |
Q |
| |
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|||||| ||||||| ||||||||||| ||||| ||||||| ||| |||||| |||| |||| | ||||| ||||||| ||||||||| | | |||| |
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| T |
6472737 |
aaatcacctgaacctttcttctcaaacttatactcaacactaaacggttctttgagcatagcttcacctgacaaagggtaacaagaactgtacttatcaa |
6472638 |
T |
|
| Q |
113 |
gaacagcttcgtttttcgaatcagaatccggtagcaaagcaatccgaattatgccggaaaaggtgtcagaagttatctgagaa |
195 |
Q |
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| T |
6472637 |
ggacatcttcgttttttgaattggaatccggcaacaaagctatccgaatcatgccggaaaaggcctcagaagtgatctcagaa |
6472555 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 6528674 - 6528863
Alignment:
| Q |
1 |
gctaacagtaacaaatcatctgaaccattcttctcaaaattatattcaacacaaaatggttctctgagtttagcattacctgctaaagggtgacaagaac |
100 |
Q |
| |
|
||||||| ||||||||| | |||| |||||||| | ||||| |||||||||||||||||||||||| |||||| ||||| | ||| | ||| ||| |
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| T |
6528674 |
gctaacatcaacaaatcaccccaacccttcttctcccatttatactcaacacaaaatggttctctgagtatagcatcacctgacacaggataacagaaac |
6528773 |
T |
|
| Q |
101 |
taaatctgtcaagaacagcttcgtttttcgaatcagaatccggtagcaaagcaatccgaattatgccggaaaaggtgtcagaagttatct |
190 |
Q |
| |
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| | |||||||||||||| || | ||| |||||||||||||| | ||||| || |||||| |||| ||||||| || |||||||||| |
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|
| T |
6528774 |
aatacctgtcaagaacagcctcatgttttgaatcagaatccggcaataaagctattcgaattgtgccagaaaaggcctcggaagttatct |
6528863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 6465891 - 6465964
Alignment:
| Q |
84 |
taaagggtgacaagaactaaatctgtcaagaacagcttcgtttttcgaatcagaatccggtagcaaagcaatcc |
157 |
Q |
| |
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|||||||| |||||||||||| |||||||||||| |||| | || |||||||||| || | ||||||||||| |
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| T |
6465891 |
taaagggtaacaagaactaaacctgtcaagaacatcttcatgcttgaaatcagaatcaggcaacaaagcaatcc |
6465964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 224
Target Start/End: Complemental strand, 13035337 - 13035220
Alignment:
| Q |
107 |
tgtcaagaacagcttcgtttttcgaatcagaatccggtagcaaagcaatccgaattatgccggaaaaggtgtcagaagttatctgagaagtaaaatgact |
206 |
Q |
| |
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||||||||| | | |||||||| |||| ||||||| | ||||||||||||||||||| |||||||| |||||||| |||| |||| |||||| |
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| T |
13035337 |
tgtcaagaatatcctcgttttttgaattgaaatccggaaataaagcaatccgaattatgctggaaaaggcctcagaagtgatctcagaaagttcatgact |
13035238 |
T |
|
| Q |
207 |
caacttgattggcgagga |
224 |
Q |
| |
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|||||||||||| |||| |
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| T |
13035237 |
taacttgattggcaagga |
13035220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 163
Target Start/End: Complemental strand, 9664931 - 9664844
Alignment:
| Q |
76 |
ttacctgctaaagggtgacaagaactaaatctgtcaagaacagcttcgtttttcgaatcagaatccggtagcaaagcaatccgaatta |
163 |
Q |
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||||||| |||||||| ||||| ||||| |||||||||||||||| ||||| |||||||||||||| | ||||||||||| ||||| |
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| T |
9664931 |
ttacctgataaagggtaacaagtgctaaacttgtcaagaacagcttcattttttgaatcagaatccggcaacaaagcaatcctaatta |
9664844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 163
Target Start/End: Complemental strand, 13535955 - 13535868
Alignment:
| Q |
76 |
ttacctgctaaagggtgacaagaactaaatctgtcaagaacagcttcgtttttcgaatcagaatccggtagcaaagcaatccgaatta |
163 |
Q |
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| T |
13535955 |
ttacctgataaagggtaacaagtgctaaacttgtcaagaacagcttcattttttgaatcagaatccggcaacaaagcaatcctaatta |
13535868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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