View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10330_low_42 (Length: 240)
Name: NF10330_low_42
Description: NF10330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10330_low_42 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 37830184 - 37830406
Alignment:
| Q |
18 |
agattgacctcctccttttcaataggatgtcattcatattgaaattatgggcttgactagtgttaatggcactctttgtctctaccaagacattaacgat |
117 |
Q |
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| T |
37830184 |
agattgacctcctccttttcaataggatgtcattcatattgaaattatgggcttgactagtgttaatggcactctttgtctctaccaagacattaacgat |
37830283 |
T |
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| Q |
118 |
gacataacaaatgtgttgtagaacccttctgccatagaatttaaggacattcctcctagcatacaaccttacgacaatattgagtttaattttcatcctc |
217 |
Q |
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| T |
37830284 |
gacataacaaatgtactgtagaacccttctgccatagaatttaaggacattcctcctagcatacaaccttacgacaatattgagtttaattttcatcctc |
37830383 |
T |
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| Q |
218 |
aaggatttggttacgactgtgtt |
240 |
Q |
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| T |
37830384 |
aaggatttggttacgactgtgtt |
37830406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 76 - 200
Target Start/End: Original strand, 12705152 - 12705276
Alignment:
| Q |
76 |
agtgttaatggcactctttgtctctaccaagacattaacgatgacataacaaatgtgttgtagaacccttctgccatagaatttaaggacattcctccta |
175 |
Q |
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| T |
12705152 |
agtgttaatggcactctttgtctctaccaaggcatttactatgacacaaaaattgtgttgtggaatcctgctaccacaaaatttaaggttgttcctccta |
12705251 |
T |
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| Q |
176 |
gcatacaaccttacgacaatattga |
200 |
Q |
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| T |
12705252 |
gctttcaaccgtatgacaacattga |
12705276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 74 - 206
Target Start/End: Complemental strand, 12712479 - 12712347
Alignment:
| Q |
74 |
ctagtgttaatggcactctttgtctctaccaagacattaacgatgacataacaaatgtgttgtagaacccttctgccatagaatttaaggacattcctcc |
173 |
Q |
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| T |
12712479 |
ctagtgttaatggcactctttgtctctaccaaggcaattaccatgacacaaaaattgtgttgtggaatcctgctaccacagaatttaaggttgttccgcg |
12712380 |
T |
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| Q |
174 |
tagcatacaaccttacgacaatattgagtttaa |
206 |
Q |
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| T |
12712379 |
tagctttcaaccgtatgacaacattgagtttaa |
12712347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 163
Target Start/End: Original strand, 6117247 - 6117336
Alignment:
| Q |
74 |
ctagtgttaatggcactctttgtctctaccaagacattaacgatgacataacaaatgtgttgtagaacccttctgccatagaatttaagg |
163 |
Q |
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| T |
6117247 |
ctagtgttaatggcactctttgtctctaccaaggaaattacggtaacacaaaaattgtgttgtggaatcctgctaccacagaatttaagg |
6117336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 106
Target Start/End: Original strand, 18081666 - 18081698
Alignment:
| Q |
74 |
ctagtgttaatggcactctttgtctctaccaag |
106 |
Q |
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| T |
18081666 |
ctagtgttaatggcactctatgtctctaccaag |
18081698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 102
Target Start/End: Original strand, 18096092 - 18096120
Alignment:
| Q |
74 |
ctagtgttaatggcactctttgtctctac |
102 |
Q |
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| T |
18096092 |
ctagtgttaatggcactctttgtctctac |
18096120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 29 - 231
Target Start/End: Complemental strand, 22535916 - 22535714
Alignment:
| Q |
29 |
ctccttttcaataggatgtcattcatattgaaattatgggcttgactagtgttaatggcactctttgtctctaccaagacattaacgatgacataacaaa |
128 |
Q |
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| T |
22535916 |
ctccttttcaagatgatgtctatcctattgaaattttgggctcgactagtgttaatggcactctttgtctctaccaagacattaacgatgagataacaat |
22535817 |
T |
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| Q |
129 |
tgtgttgtagaacccttctgccatagaatttaaggacattcctcctagcatacaaccttacgacaatattgagtttaattttcatcctcaaggatttggt |
228 |
Q |
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||| |||| ||||||||| | |||||||||| |||||||||||| | || || |||||||| |||||| |||||||||||||||| ||||||||| |
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| T |
22535816 |
tgtattgtggaacccttcaacgggggaatttaaggtcattcctcctagtgttcagccctacgacaacattgagcttaattttcatcctcatggatttggt |
22535717 |
T |
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| Q |
229 |
tac |
231 |
Q |
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||| |
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| T |
22535716 |
tac |
22535714 |
T |
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