View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10330_low_46 (Length: 238)
Name: NF10330_low_46
Description: NF10330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10330_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 43385824 - 43385603
Alignment:
| Q |
1 |
gttggtaagttgtattggctatcttcctgttatctaatcatagttattttctgctaaacatcgtattcgaccattgctaaattcagtactgagtttttaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43385824 |
gttggtaagttgtattggctatcttcctgttatctaatcatagttattttctgctaaacatcgtattcgaccattgctaaattcggtactgagtttttaa |
43385725 |
T |
|
| Q |
101 |
tggcttccaagttccaagtataggtgcatgcgttcatatttttacattttcatctcaaaagtgagatgtataattaaatctcccctcctcattcctcaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43385724 |
tggcttccaagttccaagtataggtgcatgcgttcatatttttacattttcatctcaaaagtgagatgtataattaaatctcccctcctcattcctcaaa |
43385625 |
T |
|
| Q |
201 |
atctaatttgaaatcaattaag |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
43385624 |
atctaatttgaaatcaattaag |
43385603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 8775248 - 8775035
Alignment:
| Q |
1 |
gttggtaagttgtattggctatcttcctgttatctaatcatagttattttctgctaaacatcgtattcgaccattgctaaattcagtactgagtttttaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| | |||||||| |||| ||||||||||||||| |
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| T |
8775248 |
gttggtaagttgtattggctatcttcctgttatctaatcagagttattttctgctaaacattgtatctgtccattgct--attcggtactgagtttttaa |
8775151 |
T |
|
| Q |
101 |
tggcttccaagttccaagtata-ggtgcatgcgttcatatttttacattttcatctcaaaagtgagatgtataattaaatctcccctcctcattcctcaa |
199 |
Q |
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||| |||||| |||| |||||||| |||||| ||| ||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||| |
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| T |
8775150 |
aggc-------ttccaaatatagggtgcatgtgttcatgtttgtacattttcatctcaaatgtgagatgtataataaaacctcccctcctcattcctcaa |
8775058 |
T |
|
| Q |
200 |
aatctaatttgaaatcaattaag |
222 |
Q |
| |
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|||| ||||| |||||||||||| |
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| T |
8775057 |
aatccaattttaaatcaattaag |
8775035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 1692124 - 1692337
Alignment:
| Q |
1 |
gttggtaagttgtattggctatcttcctgttatctaatcatagttattttctgctaaacatcgtattcgaccattgctaaattcagtactgagtttttaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| | |||||||| ||| ||||||||||||||| |
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| T |
1692124 |
gttggtaagttgtattggctatcttcctgttatctaatcacagttattttctgctaaacattgtatctgtccattgct--atttggtactgagtttttaa |
1692221 |
T |
|
| Q |
101 |
tggcttccaagttccaagtata-ggtgcatgcgttcatatttttacattttcatctcaaaagtgagatgtataattaaatctcccctcctcattcctcaa |
199 |
Q |
| |
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||| |||||| |||| |||||| | |||||| ||| ||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||| |
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| T |
1692222 |
aggc-------ttccaaatatagggtgcaagtgttcatgtttgtacattttcatctcaaatgtgagatgtataataaaacctcccctcctcattcctcaa |
1692314 |
T |
|
| Q |
200 |
aatctaatttgaaatcaattaag |
222 |
Q |
| |
|
|||| ||||| |||||||||||| |
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|
| T |
1692315 |
aatccaattttaaatcaattaag |
1692337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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