View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10330_low_47 (Length: 237)

Name: NF10330_low_47
Description: NF10330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10330_low_47
NF10330_low_47
[»] chr1 (15 HSPs)
chr1 (1-225)||(4454898-4455120)
chr1 (5-77)||(21148177-21148248)
chr1 (16-77)||(16972090-16972151)
chr1 (1-77)||(21185429-21185503)
chr1 (1-77)||(2260381-2260456)
chr1 (1-52)||(2657541-2657591)
chr1 (16-77)||(4059762-4059823)
chr1 (16-77)||(10684797-10684858)
chr1 (16-77)||(14601732-14601793)
chr1 (16-77)||(18606923-18606984)
chr1 (16-77)||(24196501-24196562)
chr1 (16-77)||(28920891-28920952)
chr1 (16-77)||(43706893-43706954)
chr1 (16-77)||(50334721-50334782)
chr1 (1-77)||(4059525-4059600)
[»] chr5 (7 HSPs)
chr5 (1-79)||(23039952-23040030)
chr5 (16-83)||(4800931-4800998)
chr5 (2-79)||(41663525-41663600)
chr5 (16-52)||(16307717-16307753)
chr5 (16-70)||(10379293-10379347)
chr5 (16-77)||(31648059-31648120)
chr5 (15-83)||(32466071-32466139)
[»] chr8 (11 HSPs)
chr8 (16-79)||(22452174-22452237)
chr8 (1-77)||(3208205-3208280)
chr8 (1-77)||(21929850-21929925)
chr8 (16-77)||(3380202-3380263)
chr8 (16-77)||(4518872-4518933)
chr8 (16-77)||(4519107-4519168)
chr8 (16-77)||(18881507-18881568)
chr8 (16-77)||(19924505-19924566)
chr8 (16-77)||(21666277-21666338)
chr8 (16-77)||(33895613-33895674)
chr8 (19-79)||(15869338-15869398)
[»] chr6 (7 HSPs)
chr6 (16-77)||(8415288-8415349)
chr6 (16-77)||(2059060-2059121)
chr6 (16-77)||(4013905-4013966)
chr6 (16-77)||(25819924-25819985)
chr6 (22-77)||(2058837-2058892)
chr6 (16-77)||(35102494-35102555)
chr6 (16-76)||(14572182-14572242)
[»] chr4 (16 HSPs)
chr4 (1-77)||(20919338-20919412)
chr4 (16-77)||(35475294-35475355)
chr4 (1-77)||(13394539-13394614)
chr4 (33-79)||(33621043-33621089)
chr4 (16-77)||(4357255-4357316)
chr4 (16-77)||(13397678-13397739)
chr4 (16-77)||(43793634-43793695)
chr4 (7-79)||(6209473-6209544)
chr4 (1-52)||(45633662-45633712)
chr4 (16-77)||(4098896-4098957)
chr4 (16-77)||(9397429-9397490)
chr4 (16-77)||(25011738-25011799)
chr4 (16-77)||(41877264-41877325)
chr4 (16-77)||(55780390-55780451)
chr4 (16-77)||(55844570-55844631)
chr4 (33-77)||(4099046-4099090)
[»] chr3 (16 HSPs)
chr3 (16-77)||(40836418-40836479)
chr3 (16-79)||(23428859-23428922)
chr3 (16-77)||(1743258-1743319)
chr3 (16-77)||(3781118-3781179)
chr3 (16-77)||(36311155-36311215)
chr3 (16-67)||(10743422-10743473)
chr3 (16-79)||(22447984-22448047)
chr3 (1-67)||(23320586-23320651)
chr3 (16-77)||(3328816-3328877)
chr3 (16-77)||(13080897-13080958)
chr3 (16-77)||(25179581-25179642)
chr3 (16-77)||(26628265-26628326)
chr3 (16-77)||(26633364-26633424)
chr3 (16-77)||(32315158-32315218)
chr3 (16-60)||(17775701-17775745)
chr3 (16-60)||(19077002-19077046)
[»] chr7 (16 HSPs)
chr7 (16-79)||(7365222-7365285)
chr7 (16-79)||(23373661-23373724)
chr7 (16-77)||(9157287-9157347)
chr7 (1-77)||(5111636-5111711)
chr7 (1-77)||(15681856-15681931)
chr7 (7-79)||(23658775-23658845)
chr7 (16-79)||(3562672-3562735)
chr7 (16-79)||(10023787-10023850)
chr7 (16-79)||(19493556-19493619)
chr7 (16-79)||(19919605-19919668)
chr7 (18-77)||(21225788-21225846)
chr7 (1-79)||(3403053-3403129)
chr7 (16-77)||(8527034-8527095)
chr7 (16-77)||(11843181-11843242)
chr7 (20-77)||(31493914-31493971)
chr7 (1-77)||(42271558-42271633)
[»] chr2 (10 HSPs)
chr2 (16-77)||(25884181-25884242)
chr2 (16-67)||(12350250-12350301)
chr2 (16-79)||(21773499-21773562)
chr2 (1-79)||(25298802-25298879)
chr2 (16-78)||(36199414-36199476)
chr2 (16-77)||(25299040-25299101)
chr2 (16-77)||(30714278-30714339)
chr2 (16-77)||(30714514-30714575)
chr2 (16-77)||(32677819-32677880)
chr2 (16-72)||(2123384-2123439)
[»] scaffold0607 (1 HSPs)
scaffold0607 (1-77)||(2051-2127)
[»] scaffold0291 (1 HSPs)
scaffold0291 (16-77)||(10163-10224)
[»] scaffold0025 (1 HSPs)
scaffold0025 (16-77)||(19521-19582)
[»] scaffold0014 (1 HSPs)
scaffold0014 (1-77)||(112353-112427)


Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 4455120 - 4454898
Alignment:
Q  1 ccaaaattgtaattcttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagtttaacttaacctattttgacttatat 100  Q
    |||||||||||||| |||||||||| ||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||    
T  4455120 ccaaaattgtaatt-ttttttaataaggagctaaaatcgcaacattttaaaacttaggggtcgaaaagtgcagtttaacttaacccattttgacttatat 4455022  T
Q  101 ttgaaatatgtctggcttttttaagtatcatatttcaatactcttaatttggctgattttattgtgtttgatgtttagccatcaaatacattgacattat 200  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  4455021 ttgaaatatgtctagcttttt-aagtatcatatttcaatactcttaatttggttgattttattgtgtttgatgtttagccataaaatacattgacattat 4454923  T
Q  201 cgcttttttgatgtagttatgattg 225  Q
    |||||||||||||||||||||||||    
T  4454922 cgcttttttgatgtagttatgattg 4454898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 21148177 - 21148248
Alignment:
Q  5 aattgtaattcttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    |||||||||| ||||||||||||| || ||||||| ||||||||||||||||||||||||||| |||||||||    
T  21148177 aattgtaatt-ttttttaatagggggccaaaatcgcaacattttaaaatttaggggtcgaaaagtgcagttta 21148248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 16972090 - 16972151
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||| |||||||||| |||||||||||| ||||||| |||||| |||||||||    
T  16972090 ttttttaatagggggctaaaatcgcaacattttaaaacttagggggcgaaaagtgcagttta 16972151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 21185429 - 21185503
Alignment:
Q  1 ccaaaattgtaattcttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    |||||||||||| | || ||||||| || |||||||| |||||||||||||||||| ||||||||||||||||||||    
T  21185429 ccaaaattgtaaat-ttctttaataagg-gctaaaattgtaacattttaaaatttaagggtcgaaaaatgcagttta 21185503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 2260456 - 2260381
Alignment:
Q  1 ccaaaattgtaattcttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    |||||||||||||| |||||||||| ||| | ||||||| |||||||||||| ||| |||||||||| |||| ||||    
T  2260456 ccaaaattgtaatt-ttttttaataaggaaccaaaatcgcaacattttaaaacttaagggtcgaaaagtgcacttta 2260381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 2657591 - 2657541
Alignment:
Q  1 ccaaaattgtaattcttttttaatagggagctaaaatcgtaacattttaaaa 52  Q
    ||||||||| |||| ||||||||||||| |||||||||| ||||||||||||    
T  2657591 ccaaaattgcaatt-ttttttaatagggggctaaaatcgcaacattttaaaa 2657541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 4059762 - 4059823
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||| |||||||||| |||||||| ||| |||| || |||||| || ||||||    
T  4059762 ttttttaatagggggctaaaatcgcaacattttgaaacttagagggcgaaaagtgaagttta 4059823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 10684858 - 10684797
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    |||||||||||||  ||||||| | |||||||||||| ||| ||| |||||||| |||||||    
T  10684858 ttttttaataggggactaaaattgcaacattttaaaacttaaggggcgaaaaatacagttta 10684797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 14601732 - 14601793
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||| |  ||||||| |||||||||||| |||||||  |||||| ||||||||    
T  14601732 ttttttaatagggggtcaaaatcgcaacattttaaaacttagggggtgaaaaacgcagttta 14601793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 18606923 - 18606984
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||| |  ||||||  |||||||||||| |||||||||||||| || ||||||    
T  18606923 ttttttaatagggggtcaaaatcacaacattttaaaacttaggggtcgaaaagtgtagttta 18606984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 24196501 - 24196562
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||| || ||||||| ||||||||||||  |||| | |||||| |||||||||    
T  24196501 ttttttaatagggggccaaaatcgcaacattttaaaacataggaggcgaaaagtgcagttta 24196562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 28920891 - 28920952
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||| || ||||||| |||||||| ||| ||||||| |||||| || ||||||    
T  28920891 ttttttaatagggggccaaaatcgcaacattttgaaacttagggggcgaaaagtgaagttta 28920952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 43706893 - 43706954
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||| || ||||||| |||||||||||| ||||||| | |||| || ||||||    
T  43706893 ttttttaatagggggccaaaatcgcaacattttaaaaattagggggcaaaaagtggagttta 43706954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 50334782 - 50334721
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||| || ||||| | |||||||||||| ||||||| |||||| || ||||||    
T  50334782 ttttttaatagggggccaaaattgcaacattttaaaacttagggggcgaaaagtggagttta 50334721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 4059600 - 4059525
Alignment:
Q  1 ccaaaattgtaattcttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||| |||| ||||||||||||| || ||||||| |||||||| |||  |||||| |||||| |||| ||||    
T  4059600 ccaaaattgcaatt-ttttttaatagggggccaaaatcgcaacattttgaaacatagggggcgaaaagtgcacttta 4059525  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 23040030 - 23039952
Alignment:
Q  1 ccaaaattgtaattcttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagtttaac 79  Q
    |||||||||||||| ||||||||||| |  | |||||||||||||||||||| |||  ||||||||| |||||||||||    
T  23040030 ccaaaattgtaatttttttttaatagaggaccaaaatcgtaacattttaaaacttataggtcgaaaagtgcagtttaac 23039952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 4800998 - 4800931
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagtttaacttaa 83  Q
    |||||||||| || | |||||||| |||||||||||| ||||||| |||||||||||||||| |||||    
T  4800998 ttttttaatatggggttaaaatcgcaacattttaaaacttagggggcgaaaaatgcagtttagcttaa 4800931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 41663600 - 41663525
Alignment:
Q  2 caaaattgtaattcttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagtttaac 79  Q
    |||||||||||||  ||||||||  ||||  ||||| | || ||||||||||||||||||||||||||| ||||||||    
T  41663600 caaaattgtaatt--tttttaatgaggagtcaaaattgcaatattttaaaatttaggggtcgaaaaatgtagtttaac 41663525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 16307717 - 16307753
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaa 52  Q
    |||||||||||||||||||||||| ||||||||||||    
T  16307717 ttttttaatagggagctaaaatcgcaacattttaaaa 16307753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 10379347 - 10379293
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatg 70  Q
    |||||||||| || || ||||| |||||||||||||| ||||||| |||||||||    
T  10379347 ttttttaataaggggccaaaattgtaacattttaaaacttaggggacgaaaaatg 10379293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 31648120 - 31648059
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||| || ||||||| |||||||| ||||||| ||| |||||| || ||||||    
T  31648120 ttttttaatagggggcgaaaatcgcaacattttgaaatttatgggacgaaaagtggagttta 31648059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 32466071 - 32466139
Alignment:
Q  15 cttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagtttaacttaa 83  Q
    ||||||||||||||    ||||||| |||||||| ||| ||||||| |||||| | |||||||||||||    
T  32466071 cttttttaataggggatcaaaatcgcaacattttgaaacttaggggacgaaaagtacagtttaacttaa 32466139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 22452237 - 22452174
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagtttaac 79  Q
    ||||||||||||| |||||||| | ||||||||||||| |||||| |||||| |||||||||||    
T  22452237 ttttttaatagggggctaaaattgcaacattttaaaatatagggggcgaaaagtgcagtttaac 22452174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 3208205 - 3208280
Alignment:
Q  1 ccaaaattgtaattcttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    |||||||||| ||| ||||| ||||||  |||||||||| ||| |||||||| |||||||||||||| |||||||||    
T  3208205 ccaaaattgttatt-tttttaaataggaggctaaaatcgcaactttttaaaacttaggggtcgaaaagtgcagttta 3208280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 21929925 - 21929850
Alignment:
Q  1 ccaaaattgtaattcttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||| |||| |||||||||||||||| ||||||| ||| |||| |||  |||||| ||||||||||| ||||    
T  21929925 ccaaaattgcaatt-ttttttaatagggagccaaaatcgcaacgttttgaaacatagggggcgaaaaatgcacttta 21929850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 3380263 - 3380202
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    |||||||||||||||| ||||||| |||||||| ||| |||  ||  |||||||||||||||    
T  3380263 ttttttaatagggagccaaaatcgcaacattttgaaacttaaagggtgaaaaatgcagttta 3380202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 4518933 - 4518872
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||| || ||||||| || |||||||||| |||||| |||||| |||| ||||    
T  4518933 ttttttaatagggggccaaaatcgcaatattttaaaatatagggggcgaaaagtgcacttta 4518872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 4519107 - 4519168
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    |||||||||||||||| ||||||| |||||||| ||| |||| || |||||| || ||||||    
T  4519107 ttttttaatagggagccaaaatcgcaacattttgaaacttagaggacgaaaagtgaagttta 4519168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 18881568 - 18881507
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||| || ||||||| ||||||| |||| ||| ||||||||||  ||||||||    
T  18881568 ttttttaatagggggccaaaatcgcaacatttcaaaacttaagggtcgaaaagcgcagttta 18881507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 19924505 - 19924566
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    |||||||||| || || ||||| ||||||||||||||  |||||| |||||| |||||||||    
T  19924505 ttttttaataaggggccaaaattgtaacattttaaaacataggggacgaaaagtgcagttta 19924566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 21666338 - 21666277
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    |||||||||||||||||||||||  |||||||  ||| ||| ||| |||||| |||||||||    
T  21666338 ttttttaatagggagctaaaatcacaacatttcgaaacttaagggacgaaaagtgcagttta 21666277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 33895613 - 33895674
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    |||||||||||||  | ||||| | ||||||||||||| |||||| |||||| |||||||||    
T  33895613 ttttttaataggggaccaaaattgcaacattttaaaatatagggggcgaaaagtgcagttta 33895674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 15869398 - 15869338
Alignment:
Q  19 tttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagtttaac 79  Q
    ||||||||||  | ||||||| ||||||||||||||||| || |||||| |||||| ||||    
T  15869398 tttaataggggaccaaaatcgcaacattttaaaatttagagggcgaaaagtgcagtctaac 15869338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 8415288 - 8415349
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    |||||||||||||||||||||||| |||||| |||||  |||||| |||||| |||||||||    
T  8415288 ttttttaatagggagctaaaatcgcaacattataaaacatagggggcgaaaagtgcagttta 8415349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 2059060 - 2059121
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||| |  ||||||| |||||||||||||||||||  ||||||||||| ||||    
T  2059060 ttttttaatagggggtcaaaatcgcaacattttaaaatttagggagcgaaaaatgcaattta 2059121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 4013905 - 4013966
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||| || ||||||| |||||||| ||| ||||||| |||||| |||||||||    
T  4013905 ttttttaatagggggccaaaatcgcaacattttgaaacttaggggacgaaaagtgcagttta 4013966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 25819924 - 25819985
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||| || ||||| ||||||||||||||  |||||| |||||| |||||||||    
T  25819924 ttttttaatagggggccaaaattgtaacattttaaaacataggggacgaaaagtgcagttta 25819985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 2058892 - 2058837
Alignment:
Q  22 aatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    |||||||||||||||||| |||||||||||||||| | | | |||| |||||||||    
T  2058892 aatagggagctaaaatcgcaacattttaaaatttacgaggcaaaaagtgcagttta 2058837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 35102555 - 35102494
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||| |||||||||| |||||||| |||  |||||| |||||| |||| ||||    
T  35102555 ttttttaatagggggctaaaatcgcaacattttgaaacatagggggcgaaaagtgcacttta 35102494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 14572242 - 14572182
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttt 76  Q
    ||||||||||||| || ||||| | ||||||||||||  |||||| |||||| ||||||||    
T  14572242 ttttttaatagggggccaaaattgcaacattttaaaacatagggggcgaaaagtgcagttt 14572182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 20919412 - 20919338
Alignment:
Q  1 ccaaaattgtaattcttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||||  |||||||||| || | ||||||| |||||||| ||| |||||||||||||| |||||||||    
T  20919412 ccaaaattgtaatt--tttttaatagagaaccaaaatcgcaacattttgaaacttaggggtcgaaaagtgcagttta 20919338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 35475355 - 35475294
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    |||||||||||||||| ||||||| |||||||||||| |||| || ||||||||| ||||||    
T  35475355 ttttttaatagggagccaaaatcgcaacattttaaaacttagagggcgaaaaatgaagttta 35475294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 13394614 - 13394539
Alignment:
Q  1 ccaaaattgtaattcttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    |||||||||| ||| ||||||||||||| |||||||||| ||||||||||||  |||||| |||||| |||| ||||    
T  13394614 ccaaaattgtcatt-ttttttaatagggggctaaaatcgcaacattttaaaacatagggggcgaaaagtgcacttta 13394539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 33621089 - 33621043
Alignment:
Q  33 aaaatcgtaacattttaaaatttaggggtcgaaaaatgcagtttaac 79  Q
    |||||||||||||||||||| ||||| ||||||||||||||| ||||    
T  33621089 aaaatcgtaacattttaaaacttaggcgtcgaaaaatgcagtctaac 33621043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 4357316 - 4357255
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    |||||||||||||||||||||||| |||||||| ||| |||| || |||||| || ||||||    
T  4357316 ttttttaatagggagctaaaatcgcaacattttgaaacttagagggcgaaaagtgaagttta 4357255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 13397739 - 13397678
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||| |||||||||| ||||||||||||  |||||| |||||| |||| ||||    
T  13397739 ttttttaatagggggctaaaatcgcaacattttaaaacatagggggcgaaaagtgcacttta 13397678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 43793695 - 43793634
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||| || ||||||| ||||||||||||  |||||| |||||| |||||||||    
T  43793695 ttttttaatagggggccaaaatcgcaacattttaaaacatagggggcgaaaagtgcagttta 43793634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 6209473 - 6209544
Alignment:
Q  7 ttgtaattcttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagtttaac 79  Q
    |||||||| |||||||||||||  | ||||||| |||||||||||| ||||||||| |||| |||| ||||||    
T  6209473 ttgtaatt-ttttttaataggggaccaaaatcgcaacattttaaaacttaggggtctaaaagtgcaatttaac 6209544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 45633662 - 45633712
Alignment:
Q  1 ccaaaattgtaattcttttttaatagggagctaaaatcgtaacattttaaaa 52  Q
    ||||||||| |||| ||||||||||||| |||||||||| ||||||||||||    
T  45633662 ccaaaattgcaatt-ttttttaatagggggctaaaatcgcaacattttaaaa 45633712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 4098896 - 4098957
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||| | || ||||||| |||||||||||| |||| |||| |||| |||||||||    
T  4098896 ttttttaatagagggccaaaatcgcaacattttaaaacttagaggtcaaaaagtgcagttta 4098957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 9397429 - 9397490
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||| || ||||||  |||||||||||| |||||||  ||||| |||||||||    
T  9397429 ttttttaatagggggccaaaatcccaacattttaaaacttagggggtgaaaagtgcagttta 9397490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 25011799 - 25011738
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||| || ||||||| |||||||| ||| ||||||| |||||| || ||||||    
T  25011799 ttttttaatagggggccaaaatcgcaacattttgaaacttaggggacgaaaagtggagttta 25011738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 41877264 - 41877325
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    |||||||||||||||| ||||||| |||||||| ||| |||| || |||||| || ||||||    
T  41877264 ttttttaatagggagccaaaatcgcaacattttgaaacttagagggcgaaaagtgaagttta 41877325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 55780451 - 55780390
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||| || ||||||| ||||||| |||| ||| ||| ||||||||| ||||||    
T  55780451 ttttttaatagggggccaaaatcgcaacatttgaaaacttaaggggcgaaaaatgaagttta 55780390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 55844631 - 55844570
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||| || ||||||| ||||||| |||| ||| ||| ||||||||| ||||||    
T  55844631 ttttttaatagggggccaaaatcgcaacatttgaaaacttaaggggcgaaaaatgaagttta 55844570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 4099046 - 4099090
Alignment:
Q  33 aaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||| ||||||||||||||||| |||| |||| |||||||||    
T  4099046 aaaatcgcaacattttaaaatttagaggtcaaaaagtgcagttta 4099090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 40836418 - 40836479
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||| |  ||||||| |||||||||||| ||||||| ||||||||||||||||    
T  40836418 ttttttaatagggggtcaaaatcgcaacattttaaaacttagggggcgaaaaatgcagttta 40836479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 23428859 - 23428922
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagtttaac 79  Q
    ||||||||||||| || ||||| |||||||||| ||| ||||||| ||||||||| ||||||||    
T  23428859 ttttttaatagggggccaaaattgtaacattttgaaacttagggggcgaaaaatgaagtttaac 23428922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 1743319 - 1743258
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||| |||||||||| |||||||| ||| ||||||  |||||| |||||||||    
T  1743319 ttttttaatagggggctaaaatcgaaacattttgaaacttagggtgcgaaaagtgcagttta 1743258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 3781118 - 3781179
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||  || |||||||||||||||||||||||| | | |||||| |||||||||    
T  3781118 ttttttaataggaggccaaaatcgtaacattttaaaatttaagaggcgaaaagtgcagttta 3781179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 36311215 - 36311155
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||| || ||||||| |||||||||||| ||||||| |||||| |||||||||    
T  36311215 ttttttaataggg-gccaaaatcgcaacattttaaaacttaggggacgaaaagtgcagttta 36311155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 10743473 - 10743422
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaa 67  Q
    ||||||||||||| || ||||||| |||||||||||| ||||||| ||||||    
T  10743473 ttttttaatagggggccaaaatcgcaacattttaaaacttagggggcgaaaa 10743422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 22447984 - 22448047
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagtttaac 79  Q
    ||||||||||||| || ||||| | |||||||||||| |||| || |||||| |||||||||||    
T  22447984 ttttttaatagggggccaaaattgcaacattttaaaacttagagggcgaaaagtgcagtttaac 22448047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 23320586 - 23320651
Alignment:
Q  1 ccaaaattgtaattcttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaa 67  Q
    |||||||||||||| |||||||||||||    ||||||| |||||||||||| |||| |||||||||    
T  23320586 ccaaaattgtaatt-ttttttaataggggatcaaaatcgcaacattttaaaacttagtggtcgaaaa 23320651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 3328877 - 3328816
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||| || ||||| |||||||||| |||  |||||| |||||| |||||||||    
T  3328877 ttttttaatagggggccaaaattgtaacattttgaaacatagggggcgaaaagtgcagttta 3328816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 13080958 - 13080897
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    |||||||||||||||| ||||||| |||||||| ||| |||| || |||||| || ||||||    
T  13080958 ttttttaatagggagccaaaatcgcaacattttgaaacttagagggcgaaaagtgaagttta 13080897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 25179642 - 25179581
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||| || ||||||| |||||||||||| |||| || |||||| || ||||||    
T  25179642 ttttttaatagggggccaaaatcgcaacattttaaaacttagagggcgaaaagtgaagttta 25179581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 26628265 - 26628326
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||| || ||||||| |||||||| ||| |||| || ||||||||| ||||||    
T  26628265 ttttttaatagggggccaaaatcgcaacattttgaaacttagagggcgaaaaatgaagttta 26628326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 26633424 - 26633364
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||| |  ||||||| |||||||||||| ||||||| |||||| |||||||||    
T  26633424 ttttttaatagggggtcaaaatcgcaacattttaaaacttagggg-cgaaaagtgcagttta 26633364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 32315158 - 32315218
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    |||||||||||||| | ||||||| |||||||||||| ||| ||| |||||| |||||||||    
T  32315158 ttttttaataggga-cgaaaatcgcaacattttaaaacttaagggacgaaaagtgcagttta 32315218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 17775745 - 17775701
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttagggg 60  Q
    |||||||||||||||  ||||||| |||||||| |||||||||||    
T  17775745 ttttttaatagggagacaaaatcgcaacattttgaaatttagggg 17775701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 19077046 - 19077002
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttagggg 60  Q
    |||||||||||||||  ||||||| |||||||| |||||||||||    
T  19077046 ttttttaatagggagacaaaatcgcaacattttgaaatttagggg 19077002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 7365285 - 7365222
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagtttaac 79  Q
    ||||||||||||| || ||||||||||||||||||||  |||||| ||||||  ||||||||||    
T  7365285 ttttttaatagggggcaaaaatcgtaacattttaaaacatagggggcgaaaagcgcagtttaac 7365222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 23373661 - 23373724
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagtttaac 79  Q
    ||||||||||||| | |||||||| |||||||||||| ||||||| |||||||| || ||||||    
T  23373661 ttttttaatagggggttaaaatcgcaacattttaaaacttagggggcgaaaaatacactttaac 23373724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 9157287 - 9157347
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    |||||||||||||| | ||||||  |||||||| ||||||||||| ||||||||||||||||    
T  9157287 ttttttaatagggatc-aaaatcacaacattttgaaatttaggggacgaaaaatgcagttta 9157347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 5111636 - 5111711
Alignment:
Q  1 ccaaaattgtaattcttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    |||||||||||||| ||||||||||| | || ||||||| ||| |||||||| ||||||||| |||| || ||||||    
T  5111636 ccaaaattgtaatt-ttttttaatagagggcaaaaatcgcaactttttaaaacttaggggtcaaaaagtgtagttta 5111711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 15681856 - 15681931
Alignment:
Q  1 ccaaaattgtaattcttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    |||||||||||||| ||||||| ||||  || ||||||| |||||||| ||| ||||||||| |||| |||||||||    
T  15681856 ccaaaattgtaatt-ttttttattaggaggccaaaatcgcaacattttgaaacttaggggtctaaaagtgcagttta 15681931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 23658845 - 23658775
Alignment:
Q  7 ttgtaattcttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagtttaac 79  Q
    |||||||| ||||||||||| | || ||||||| |||||||||||| |||||| ||||||| |||||||||||    
T  23658845 ttgtaatt-ttttttaatagag-gccaaaatcgcaacattttaaaacttagggatcgaaaagtgcagtttaac 23658775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 3562672 - 3562735
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagtttaac 79  Q
    ||||||||||||| || |||||||||||||||| ||| |||| || |||||| || ||||||||    
T  3562672 ttttttaatagggggccaaaatcgtaacattttgaaacttagaggacgaaaagtgaagtttaac 3562735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 10023850 - 10023787
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagtttaac 79  Q
    ||||||||||||| |  ||| ||| ||||||||||||| |||||| |||||| |||||||||||    
T  10023850 ttttttaatagggggtcaaactcgcaacattttaaaatatagggggcgaaaagtgcagtttaac 10023787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 19493556 - 19493619
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagtttaac 79  Q
    ||||||||||||| |  ||||||| |||||||||||| |||  || ||||||||||||||||||    
T  19493556 ttttttaatagggggtcaaaatcgcaacattttaaaacttaaagggcgaaaaatgcagtttaac 19493619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 19919668 - 19919605
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagtttaac 79  Q
    |||||||||| || || ||||||| ||||||||||||| |||||| |||||| |||| ||||||    
T  19919668 ttttttaataaggggccaaaatcgcaacattttaaaatatagggggcgaaaagtgcactttaac 19919605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 21225788 - 21225846
Alignment:
Q  18 ttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||| |||||||||||| ||||||||||| || || || ||||||||||||||||    
T  21225788 ttttaatagagagctaaaatcgcaacattttaaacttaagtgg-cgaaaaatgcagttta 21225846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 3403129 - 3403053
Alignment:
Q  1 ccaaaattgtaattcttttttaatagggagctaaaatcgtaacattttaaaattta-ggggtcgaaaaatgcagtttaac 79  Q
    ||||||||||||||   ||||||||||| |  ||||||| |||||||||||| | | ||||||||||| |||||||||||    
T  3403129 ccaaaattgtaatt---ttttaatagggggtcaaaatcgcaacattttaaaactcagggggtcgaaaagtgcagtttaac 3403053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 8527034 - 8527095
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||| || ||||||| |||||||| |||| |||||| |||||| |||| ||||    
T  8527034 ttttttaatagggggccaaaatcgcaacattttgaaatatagggggcgaaaagtgcacttta 8527095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 11843242 - 11843181
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    |||||||||||||||| ||||||| |||||||| |||  |||||| ||| || |||||||||    
T  11843242 ttttttaatagggagccaaaatcgcaacattttgaaacatagggggcgagaagtgcagttta 11843181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 31493971 - 31493914
Alignment:
Q  20 ttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||| || |||||||||||||||| ||| ||||||| |||||| || ||||||    
T  31493971 ttaatagggggccaaaatcgtaacattttgaaacttaggggccgaaaagtggagttta 31493914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 42271558 - 42271633
Alignment:
Q  1 ccaaaattgtaattcttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    |||||||||| ||| ||||||||||||| || ||||| | ||||||||||||  |||||| |||||| |||| ||||    
T  42271558 ccaaaattgtcatt-ttttttaatagggggcaaaaattgcaacattttaaaacatagggggcgaaaagtgcacttta 42271633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 25884242 - 25884181
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||| || ||||||| |||||||||||| ||||||| |||||  |||||||||    
T  25884242 ttttttaatagggggccaaaatcgcaacattttaaaacttagggggcgaaatgtgcagttta 25884181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 12350250 - 12350301
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaa 67  Q
    ||||||||||||  || ||||||| |||||||||||||||| ||||||||||    
T  12350250 ttttttaataggaggccaaaatcgcaacattttaaaatttacgggtcgaaaa 12350301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 21773499 - 21773562
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagtttaac 79  Q
    |||||||| ||||||  ||||||| |||||||||||||||||||   ||||| |||||||||||    
T  21773499 ttttttaacagggagtcaaaatcgcaacattttaaaatttagggagtgaaaagtgcagtttaac 21773562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 25298879 - 25298802
Alignment:
Q  1 ccaaaattgtaattcttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagtttaac 79  Q
    ||||||||| |||| ||||||||||||  || ||||||| ||||||||||||  |||||| |||||| |||| ||||||    
T  25298879 ccaaaattgcaatt-ttttttaataggaggccaaaatcgcaacattttaaaacatagggggcgaaaagtgcactttaac 25298802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 36199476 - 36199414
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagtttaa 78  Q
    |||||||||| | |||||||||| ||||||||||||| |||||||  ||||||| || |||||    
T  36199476 ttttttaataagaagctaaaatcataacattttaaaacttagggggtgaaaaatacactttaa 36199414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 25299040 - 25299101
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||| |||||||||| |||||||| ||| |||| || |||||| || ||||||    
T  25299040 ttttttaatagggggctaaaatcgcaacattttgaaacttagagggcgaaaattgaagttta 25299101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 30714339 - 30714278
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||| || ||||||| ||||||||||||  |||||| |||||| |||| ||||    
T  30714339 ttttttaatagggggccaaaatcgcaacattttaaaacatagggggcgaaaagtgcacttta 30714278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 30714514 - 30714575
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||| || ||||| | ||||||||||||||||| || |||||| || ||||||    
T  30714514 ttttttaatagggggccaaaattgcaacattttaaaatttagagggcgaaaagtgaagttta 30714575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 32677880 - 32677819
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||| || ||||| ||||||| |||||||||||| ||||| | ||||||||||| ||||    
T  32677880 ttttttattaaggagccaaaatcgcaacattttaaaacttaggaggcgaaaaatgcacttta 32677819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 2123439 - 2123384
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgca 72  Q
    |||||||||||||| | ||||||| |||||||| ||||||||| | |||||||||||    
T  2123439 ttttttaatagggatc-aaaatcgcaacattttgaaatttaggaggcgaaaaatgca 2123384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0607 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 2127 - 2051
Alignment:
Q  1 ccaaaattgtaattcttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    |||||||||  ||| ||||||||||||| || ||||| | ||||||||||||  |||||| |||||| |||||||||    
T  2127 ccaaaattgctatttttttttaatagggggccaaaattgcaacattttaaaacatagggggcgaaaagtgcagttta 2051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 10163 - 10224
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||| |||  | ||||||| ||| |||||||| |||||||||||||| |||||||||    
T  10163 ttttttaattgggtaccaaaatcgcaacgttttaaaacttaggggtcgaaaagtgcagttta 10224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 19521 - 19582
Alignment:
Q  16 ttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||| || ||||||| |||| ||| ||| ||| ||| ||||||||||||||||    
T  19521 ttttttaatagggggccaaaatcgaaacagtttgaaacttaaggggcgaaaaatgcagttta 19582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 112353 - 112427
Alignment:
Q  1 ccaaaattgtaattcttttttaatagggagctaaaatcgtaacattttaaaatttaggggtcgaaaaatgcagttta 77  Q
    ||||||||||||||  ||||||||| ||||| ||||| | |||||||||||| || |||| |||||| || ||||||    
T  112353 ccaaaattgtaatt--tttttaataaggagccaaaattgcaacattttaaaactttggggacgaaaagtgtagttta 112427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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