View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10330_low_49 (Length: 222)
Name: NF10330_low_49
Description: NF10330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10330_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 22 - 216
Target Start/End: Complemental strand, 25036532 - 25036339
Alignment:
| Q |
22 |
taattcgttaacaaccaattcaagaacgaaattacataagtaattaaatcgggtttttgttcaaaaacaattttaataaagacaggacatatcacacctt |
121 |
Q |
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| T |
25036532 |
taattcgttaacaaccaattcaagaacgaaattac-taagtaattaaatggggtttttgttcaaaaacaattttaataaagacaggacatatcacacctg |
25036434 |
T |
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| Q |
122 |
ttctagggttccttttccaacaattttaatagagctttcatggggcttttatagggattgttataacctcccgtttatgtttttgttcttctctc |
216 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25036433 |
ttctaggggtccttttccaacaattttaatagagctttcatggggcttttatagggattgttataacctcccgtttatgtttttgttcttttctc |
25036339 |
T |
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