View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10330_low_7 (Length: 475)
Name: NF10330_low_7
Description: NF10330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10330_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 4e-79; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 29164245 - 29164088
Alignment:
| Q |
1 |
tgtgagtgctcaactttgacttttcctccatgtcgttgtaatgatgctacaggacgatcttgtcacccaggttgcgataattgcgtttgtgactcagggt |
100 |
Q |
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| T |
29164245 |
tgtgagtgctcaagtttgacttttcctccatgtcgttgtaatgatgctacaggacgatcttgtcacccaggttgcgataattgcgtttgtgactcagggt |
29164146 |
T |
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| Q |
101 |
tgcctcctacatgccgttgcgaagattacatctactcttgtaataaatgtccaaactc |
158 |
Q |
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| T |
29164145 |
tgcctcctacatgccgttgcgaagattacatctactcttgtaataaatgtacaaactc |
29164088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 285 - 463
Target Start/End: Complemental strand, 29163951 - 29163767
Alignment:
| Q |
285 |
aattgaaatttaatgatattcaacttttttgagttgctgagtaggagaagtttgtttcttatcacatacaacttaaaaaattaatcaga---aaggttgt |
381 |
Q |
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| T |
29163951 |
aattgaaatttaatgatattcaacttttttgagttgctgagttggagaagtttgtttcttatcacatataacttaaaaaattaatctgaattaaggttgt |
29163852 |
T |
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| Q |
382 |
atgttaagactgcatttagtt---gaggagatgtgttagggtgtttttgaatgaggttttgggtttgtcttgatctttgtgtctc |
463 |
Q |
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| T |
29163851 |
atgttaagactgtagttagttaaggaggagatgggttaggatggttttgaacgaggttttgggtttgtcttgatctttgtgtctc |
29163767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 199 - 273
Target Start/End: Complemental strand, 29164089 - 29164015
Alignment:
| Q |
199 |
tcaaatcaataaatattgattgatggaataaattggcaatattaatttttctattaactagtataatcttttata |
273 |
Q |
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| T |
29164089 |
tcaaatcaataaatattgattgatggaataaattggcaatattaatttttctattaactagtataatcttttata |
29164015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 124 - 225
Target Start/End: Complemental strand, 29168005 - 29167906
Alignment:
| Q |
124 |
gattacatctactcttgtaataaatgtccaaactcctaagatggacctaattaagaaccatatgaagaatgaaattcaaatcaataaatattgattgatg |
223 |
Q |
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| T |
29168005 |
gattacttcttctcttgcaataaatgtacaaactccaaagatggagctaattaagaaccaaagca--aacgaaatgcaaatcaataaatattgattgatg |
29167908 |
T |
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