View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10330_low_8 (Length: 461)
Name: NF10330_low_8
Description: NF10330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10330_low_8 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 17 - 450
Target Start/End: Complemental strand, 16000903 - 16000470
Alignment:
| Q |
17 |
acacagtttttcttccaccaagtaagaatgtcaaagcttggatcatcattttctggaggttcactcaagtatctctcaaggtcattttgttgaacaatgg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16000903 |
acacagtttttcttccaccaagtaagaatgtcaaagcttggatcatcgttttctggagggtcactcaagtatctctcaaggtcattttgttgaacaatgg |
16000804 |
T |
|
| Q |
117 |
tttctttggttttcaagtgttttttgtaggcatctgcccttgcatttagggatggatttttgggaacaacaggttgttcaacagaggaattgttcctgcc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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|
| T |
16000803 |
tttctttggttttcaagtgttttttgtaggcatctgaccttgcatttagggatggatttttgggaacatcaggttgttcaacagaggaattgttgctgcc |
16000704 |
T |
|
| Q |
217 |
cgaagggccaacaaaggattcatgttcagatttgtaaagattatacaacttgaaaaaattatcactcacactcccagccctttcttttgccatgtcgcta |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||| || ||| |
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|
| T |
16000703 |
cgaagggccaacaaaggattcatgttcagatttgtaaagattgtacaacttgaacaaattatcactcacactcccaaccctttcttttgccatttcacta |
16000604 |
T |
|
| Q |
317 |
ccagcaccatacaaatcactaaaagaccactcaatgtacccaaacttatacctagaatcaaatattactccaaagtataagaattggttcatttttacaa |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16000603 |
ccagcaccatacaaatcactaaaagaccactcaatgtactcaaacttatacctaggatcaaatattactccaaagtataagaattggttcatttttacaa |
16000504 |
T |
|
| Q |
417 |
cattaccccaatacttgtcgtacttggccttcat |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
16000503 |
cattaccccaatacttgtcgtacttggccttcat |
16000470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 17 - 450
Target Start/End: Original strand, 6837906 - 6838339
Alignment:
| Q |
17 |
acacagtttttcttccaccaagtaagaatgtcaaagcttggatcatcattttctggaggttcactcaagtatctctcaaggtcattttgttgaacaatgg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
6837906 |
acacagtttttcttccaccaagtaagaatgtcaaagcttggatcatcgttttctggagggtcactcaagtatctctcaaggtcattttgtggaacaatgg |
6838005 |
T |
|
| Q |
117 |
tttctttggttttcaagtgttttttgtaggcatctgcccttgcatttagggatggatttttgggaacaacaggttgttcaacagaggaattgttcctgcc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| ||||||||||||||||||||||||| ||||| |
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|
| T |
6838006 |
tttctttggttttcaagtgttttttgtaggcatctgcccttgtatttagggatggaatttttggaacagcaggttgttcaacagaggaattgttgctgcc |
6838105 |
T |
|
| Q |
217 |
cgaagggccaacaaaggattcatgttcagatttgtaaagattatacaacttgaaaaaattatcactcacactcccagccctttcttttgccatgtcgcta |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || || ||| |
|
|
| T |
6838106 |
cgaagggccaacaaaggattcatgttcagatttgtaaagattgtacaacttgaataaattatcactcacactcccagccctttcttttgctatatcacta |
6838205 |
T |
|
| Q |
317 |
ccagcaccatacaaatcactaaaagaccactcaatgtacccaaacttatacctagaatcaaatattactccaaagtataagaattggttcatttttacaa |
416 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6838206 |
ccagcaccatacaaatcattaaaagaccactcaatgtacccaaacttatacctaggatcaaatattactccaaagtataagaattggttcatttttacaa |
6838305 |
T |
|
| Q |
417 |
cattaccccaatacttgtcgtacttggccttcat |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
6838306 |
cattaccccaatacttgtcgtacttggccttcat |
6838339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 17 - 450
Target Start/End: Complemental strand, 22598538 - 22598105
Alignment:
| Q |
17 |
acacagtttttcttccaccaagtaagaatgtcaaagcttggatcatcattttctggaggttcactcaagtatctctcaaggtcattttgttgaacaatgg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22598538 |
acacagtttttcttccaccaagtaagaatgtcaaagcttggatcatcgttttctggagggtcactcaagtatctctcaaggtcattttgtggaacaatgg |
22598439 |
T |
|
| Q |
117 |
tttctttggttttcaagtgttttttgtaggcatctgcccttgcatttagggatggatttttgggaacaacaggttgttcaacagaggaattgttcctgcc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
22598438 |
tttctttggttttcaagtgttttttgtaggcatctgcccttgtatttagggatggaatttttggaacagcaggttgttcaacagaggaattgttgctgcc |
22598339 |
T |
|
| Q |
217 |
cgaagggccaacaaaggattcatgttcagatttgtaaagattatacaacttgaaaaaattatcactcacactcccagccctttcttttgccatgtcgcta |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || || ||| |
|
|
| T |
22598338 |
cgaagggccaacaaaggattcatgttcagatttgtaaagattgtacaacttgaataaattatcactcacactcccagccctttcttttgctatatcacta |
22598239 |
T |
|
| Q |
317 |
ccagcaccatacaaatcactaaaagaccactcaatgtacccaaacttatacctagaatcaaatattactccaaagtataagaattggttcatttttacaa |
416 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22598238 |
ccagcaccatacaaatcattaaaagaccactcaatgtacccaaacttatacctaggatcaaatattactccaaagtataagaattggttcatttttacaa |
22598139 |
T |
|
| Q |
417 |
cattaccccaatacttgtcgtacttggccttcat |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
22598138 |
cattaccccaatacttgtcgtacttggccttcat |
22598105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 21 - 450
Target Start/End: Complemental strand, 22347974 - 22347556
Alignment:
| Q |
21 |
agtttttcttccaccaagtaagaatgtcaaagcttggatcatcattttctggaggttcactcaagtatctctcaaggtcattttgttgaacaatggtttc |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||| |||||||||| ||||||||||||| |
|
|
| T |
22347974 |
agtttttcttccaccaagtaagaatgtcaaagcgtggatcatcgttttctggagggtcactcaag-----------gtcattttgtggaacaatggtttc |
22347886 |
T |
|
| Q |
121 |
tttggttttcaagtgttttttgtaggcatctgcccttgcatttagggatggatttttgggaacaacaggttgttcaacagaggaattgttcctgcccgaa |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||| |||||||||| ||||||||| |
|
|
| T |
22347885 |
tttggttttcaagtgttttttgtaggcatctgcccttgtatttagggatggattttttggaacagcaggttgttcaacaaaggaattgttgctgcccgaa |
22347786 |
T |
|
| Q |
221 |
gggccaacaaaggattcatgttcagatttgtaaagattatacaacttgaaaaaattatcactcacactcccagccctttcttttgccatgtcgctaccag |
320 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || | ||||| |
|
|
| T |
22347785 |
gggccaacaaaggattcatggtcagatttgtaaagattgtacaacttgaacaaattatcactcacactcccagccctttcttttgccatttcaccaccag |
22347686 |
T |
|
| Q |
321 |
caccatacaaatcactaaaagaccactcaatgtacccaaacttatacctagaatcaaatattactccaaagtataagaattggttcatttttacaacatt |
420 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
22347685 |
caccatacaaatcattaaaagaccactcaatgtacccaaacttatacctaggatcaaatattactccaaattataagaattggttcatttttacaacatt |
22347586 |
T |
|
| Q |
421 |
accccaatacttgtcgtacttggccttcat |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
22347585 |
accccaatacttgtcgtacttggccttcat |
22347556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 283 - 450
Target Start/End: Original strand, 21282201 - 21282368
Alignment:
| Q |
283 |
cacactcccagccctttcttttgccatgtcgctaccagcaccatacaaatcactaaaagaccactcaatgtacccaaacttatacctagaatcaaatatt |
382 |
Q |
| |
|
||||||||||||||||| |||||||| || ||| || | ||||||||||||| ||| ||||||||| | || ||||||| |||||| |||||||||| |
|
|
| T |
21282201 |
cacactcccagcccttttttttgccaaatcactatcaaccccatacaaatcaccaaatgaccactcattatattcaaacttgtacctaagatcaaatatt |
21282300 |
T |
|
| Q |
383 |
actccaaagtataagaattggttcatttttacaacattaccccaatacttgtcgtacttggccttcat |
450 |
Q |
| |
|
|||||||| || | |||||||||||||| |||| ||| |||||||||| || ||||| ||||||| |
|
|
| T |
21282301 |
actccaaaataaagtaattggttcattttcacaatattttcccaatacttatcatacttttccttcat |
21282368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 77 - 182
Target Start/End: Original strand, 14595464 - 14595569
Alignment:
| Q |
77 |
tcactcaagtatctctcaaggtcattttgttgaacaatggtttctttggttttcaagtgttttttgtaggcatctgcccttgcatttagggatggatttt |
176 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||| || |||||||| |||| ||| | ||||||||||||||| || |||||||||| |
|
|
| T |
14595464 |
tcacttaagtacctctcaaggtcattttgttgaacaatggtttcctttgttttcaaatgttgtttaaatgcatctgcccttgcaccaagtgatggatttt |
14595563 |
T |
|
| Q |
177 |
tgggaa |
182 |
Q |
| |
|
|||||| |
|
|
| T |
14595564 |
tgggaa |
14595569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 241 - 450
Target Start/End: Original strand, 14595613 - 14595821
Alignment:
| Q |
241 |
ttcagatttgtaaagattatacaacttgaaaaaattatcactcacactcccagccctttcttttgccatgtcgctaccagcaccatacaaatcactaaaa |
340 |
Q |
| |
|
|||||||||||| | ||| ||||| ||||| || ||||| ||||||| || ||||||||||||||| || |||||| | ||||||||||||| ||| |
|
|
| T |
14595613 |
ttcagatttgtacaaattgtacaatttgaataagttatctttcacacttccgaccctttcttttgccaactcactaccaac-ccatacaaatcaccaaat |
14595711 |
T |
|
| Q |
341 |
gaccactcaatgtacccaaacttatacctagaatcaaatattactccaaagtataagaattggttcatttttacaacattaccccaatacttgtcgtact |
440 |
Q |
| |
|
||||||||||| || |||| || ||||||| |||||| |||||||| || | |||||||||||||| |||||||| ||||||||||| || |||| |
|
|
| T |
14595712 |
gaccactcaatatattcaaatttgtacctagggtcaaattagactccaaaataaagcaattggttcattttcacaacattcccccaatacttatcatact |
14595811 |
T |
|
| Q |
441 |
tggccttcat |
450 |
Q |
| |
|
| ||||||| |
|
|
| T |
14595812 |
tttccttcat |
14595821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 432
Target Start/End: Complemental strand, 13308223 - 13308073
Alignment:
| Q |
282 |
tcacactcccagccctttcttttgccatgtcgctaccagcaccatacaaatcactaaaagaccactcaatgtacccaaacttatacctagaatcaaatat |
381 |
Q |
| |
|
||||||| || |||||||||||||||| || | ||| | || |||||||||| ||| ||||||||||| || |||| || ||||||| |||||||| |
|
|
| T |
13308223 |
tcacacttccggccctttcttttgccaactcattgccaaccccgtacaaatcaccaaatgaccactcaatatattcaaatttgtacctagggtcaaatat |
13308124 |
T |
|
| Q |
382 |
tactccaaagtataagaattggttcatttttacaacattaccccaatactt |
432 |
Q |
| |
|
|||||||| || | |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
13308123 |
gactccaaaataaagcaattggttcattttcacaacattcccccaatactt |
13308073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 120
Target Start/End: Complemental strand, 13308262 - 13308232
Alignment:
| Q |
90 |
tctcaaggtcattttgttgaacaatggtttc |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
13308262 |
tctcaaggtcattttgttgaacaatggtttc |
13308232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 306713 - 306754
Alignment:
| Q |
17 |
acacagtttttcttccaccaagtaagaatgtcaaagcttgga |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
306713 |
acacagtttttcttccaccaagtaagaatgtcaaagcttgga |
306754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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