View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10330_low_9 (Length: 454)
Name: NF10330_low_9
Description: NF10330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10330_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 189 - 437
Target Start/End: Complemental strand, 39292580 - 39292333
Alignment:
| Q |
189 |
ttatcaacatcatatattactaagaagcaattaggattgaattcaagagttaataaacaaacacaatcaagttactgatggttatattcagtgaaaaatc |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39292580 |
ttatcaacatcatatattactaagaagcaattaggattgaattcaagagttaataaacaaacacaatcaagttactgatggttatattcagtgaaaaatc |
39292481 |
T |
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| Q |
289 |
aaaacctaattaaaatcaaactgataaaatctgataaagcttacagattggtaaagcttcacgtcaccaaatttccaagcaaggttttacgtctgttaat |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||| |
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| T |
39292480 |
aaaacctaattaaaatcaaactgataaaatctgataaagcttacagattggtaaagcttcacgtcaccaaatttccaaccgaggttttacatctgttaat |
39292381 |
T |
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| Q |
389 |
ggcaggaacgacgacagacgtttgtttgtgaaagcaagaaaacggatat |
437 |
Q |
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||||||||||| ||| |||||||||||||||||||| |||||||||||| |
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| T |
39292380 |
ggcaggaacgaggac-gacgtttgtttgtgaaagcaggaaaacggatat |
39292333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 39292753 - 39292649
Alignment:
| Q |
16 |
agcagagaactatttgggatagcagatagagaaaccacaaacatgtgaccaacaatgcattgataatttgttgtgtgaaatcagcccattactttcttag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39292753 |
agcagagaactatttgggatagcagatagagaaaccacaaacatgtgaccaacaatgcattgataatttgttgtgtgaaatcagcccattactttcttag |
39292654 |
T |
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| Q |
116 |
ctatt |
120 |
Q |
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||||| |
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| T |
39292653 |
ctatt |
39292649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 189 - 437
Target Start/End: Original strand, 8359034 - 8359278
Alignment:
| Q |
189 |
ttatcaacatcatatattactaagaagcaattaggattgaattcaagagttaataaacaaacacaatcaagttactgatggttatattcagtgaaaaatc |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8359034 |
ttatcaacatcatatattactaagaagcaattaggattgaattcaagagttaataaacaaacacaatcaagttaccgatggttatattcagtgaaaaatc |
8359133 |
T |
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| Q |
289 |
aaaacctaattaaaatcaaactgataaaatctgataaagcttacagattggtaaagcttcacgtcaccaaatttccaagcaaggttttacgtctgttaat |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||| |
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| T |
8359134 |
aaaacctaattaaaatcaaactgataaaatctgataaagcttacagattggtaaagcttcacgtcgccaaatttccaagcgaggtcttacgtctgttaat |
8359233 |
T |
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| Q |
389 |
ggcaggaacgacgacagacgtttgtttgtgaaagcaagaaaacggatat |
437 |
Q |
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|||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
8359234 |
ggcaggaacgac----gacgtttgtttgtgaaagcaggaaaacggatat |
8359278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 8358863 - 8358968
Alignment:
| Q |
18 |
cagagaactatttgggatagcagatagagaaaccacaaacatgtgaccaacaatgcattgataatttgttgtgtgaaatcagcccattactttcttagct |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8358863 |
cagagaactatttgggatagcagatagagaaaccacaaacatgtgaccaacaatgcattgataatttgttgtgtgaaatcagcccattactttcttagca |
8358962 |
T |
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| Q |
118 |
attcag |
123 |
Q |
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|||||| |
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|
| T |
8358963 |
attcag |
8358968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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