View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10331_high_3 (Length: 418)
Name: NF10331_high_3
Description: NF10331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10331_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 12 - 403
Target Start/End: Complemental strand, 51705790 - 51705399
Alignment:
| Q |
12 |
taggagacgagttctgcacatatacacacaaataaatatataataatcttctgaaatccaatcactactcttcaattgtttttagagaaagagaatgtca |
111 |
Q |
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| T |
51705790 |
taggagacgagttctgcacatatacatacaaataaatatataataatcttctgaaatccaatcactactcttcaattgtttttagagaaagagaatgtca |
51705691 |
T |
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| Q |
112 |
tacatttttcnnnnnnncacttttgttataactcaattatgaaaactttagaacaaaattgggatgacaaaagagtgtgtgattttttctactagagaac |
211 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51705690 |
tacatttttcaaaaaaacacttttgttataactcaattatgaaaactttagaacaaaattgggatgacaaaagagtgtgtgattttttctactagagaac |
51705591 |
T |
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| Q |
212 |
atcactacatgcaccaaagtagaaaatatataatgttacataagctagtactacattatacaagcatattgaaatcaaacgtatagttaccacaaatgct |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51705590 |
atcactacatgcaccaaagtagaaaatatataatgttacataagctagtactacattatacaagcatattgaaatcaaacgtatagttaccacaaatgct |
51705491 |
T |
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| Q |
312 |
acattgacagcaacaaagtagtcagcatcaacagcgacagttgcactatcaagtgtcccataacgcaaagcggttgcgtcgtacgttataat |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51705490 |
acattgacagcaacaaagtagtcagcatcaacagcgacagttgcactatcaagtgtcccataacgcaaagcggttgcgtcgtacgttataat |
51705399 |
T |
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